mRNA_M-pyrifera_M_contig116734.3465.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116734.3465.1
Unique NamemRNA_M-pyrifera_M_contig116734.3465.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig116734.3465.1 vs. uniprot
Match: A0A2E7K786_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Gimesia sp. TaxID=2024833 RepID=A0A2E7K786_9PLAN)

HSP 1 Score: 298 bits (762), Expect = 1.110e-90
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1 
Query:    1 SGNIFTVTADNVLFQDMTLQDAAQGIRVDSVVDNLQIDNLSFEGILSGAYGIEIHNSAVLTNLSVVNSFFSGTGGTGIRMASTAVADGIHVNNTEFDGLKNAINEASNNTVAGGHLRDLQVTNSTFQNISDVSIYAEDLRDSNISGNEFFGNPAG 465
            SGNIFTVTADNVLFQDMTLQDAAQGIRVDSVVDNLQIDNLSFEGILSGAYGIEIHNSAVLTNLSVVNSFFSGTGGTGIRMASTAVADGIHVNNTEFDGLKNAINEASNNTVAGGHLRDLQVTNSTFQNISDVSIYAEDLRDSNISGNEFFGNPAG
Sbjct:  431 SGNIFTVTADNVLFQDMTLQDAAQGIRVDSVVDNLQIDNLSFEGILSGAYGIEIHNSAVLTNLSVVNSFFSGTGGTGIRMASTAVADGIHVNNTEFDGLKNAINEASNNTVAGGHLRDLQVTNSTFQNISDVSIYAEDLRDSNISGNEFFGNPAG 585
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BLAST of mRNA_M-pyrifera_M_contig116734.3465.1 vs. uniprot
Match: A0A517PJM8_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PJM8_9PLAN)

HSP 1 Score: 298 bits (762), Expect = 1.110e-90
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1 
Query:    1 SGNIFTVTADNVLFQDMTLQDAAQGIRVDSVVDNLQIDNLSFEGILSGAYGIEIHNSAVLTNLSVVNSFFSGTGGTGIRMASTAVADGIHVNNTEFDGLKNAINEASNNTVAGGHLRDLQVTNSTFQNISDVSIYAEDLRDSNISGNEFFGNPAG 465
            SGNIFTVTADNVLFQDMTLQDAAQGIRVDSVVDNLQIDNLSFEGILSGAYGIEIHNSAVLTNLSVVNSFFSGTGGTGIRMASTAVADGIHVNNTEFDGLKNAINEASNNTVAGGHLRDLQVTNSTFQNISDVSIYAEDLRDSNISGNEFFGNPAG
Sbjct:  431 SGNIFTVTADNVLFQDMTLQDAAQGIRVDSVVDNLQIDNLSFEGILSGAYGIEIHNSAVLTNLSVVNSFFSGTGGTGIRMASTAVADGIHVNNTEFDGLKNAINEASNNTVAGGHLRDLQVTNSTFQNISDVSIYAEDLRDSNISGNEFFGNPAG 585
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BLAST of mRNA_M-pyrifera_M_contig116734.3465.1 vs. uniprot
Match: UPI0012D3B9BA (pectinesterase family protein n=1 Tax=Gimesia maris TaxID=122 RepID=UPI0012D3B9BA)

HSP 1 Score: 273 bits (698), Expect = 4.500e-82
Identity = 139/155 (89.68%), Postives = 148/155 (95.48%), Query Frame = 1 
Query:    1 SGNIFTVTADNVLFQDMTLQDAAQGIRVDSVVDNLQIDNLSFEGILSGAYGIEIHNSAVLTNLSVVNSFFSGTGGTGIRMASTAVADGIHVNNTEFDGLKNAINEASNNTVAGGHLRDLQVTNSTFQNISDVSIYAEDLRDSNISGNEFFGNPAG 465
            SG +FTV AD+V FQDMTLQ+A QGIRV+SVVDNLQ+DNLSFEGI+SG YGIEIHNSAVLTNLSV NSFFSGTGGTGIRMASTAVADGIHVNNTEFDG+KNAINEASNNTV GGHLRDLQVTNSTFQNISDVSIYAED+RDSNISGN+FFGNPAG
Sbjct:  142 SGILFTVAADDVRFQDMTLQNATQGIRVNSVVDNLQVDNLSFEGIVSGTYGIEIHNSAVLTNLSVANSFFSGTGGTGIRMASTAVADGIHVNNTEFDGMKNAINEASNNTVTGGHLRDLQVTNSTFQNISDVSIYAEDMRDSNISGNDFFGNPAG 296
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BLAST of mRNA_M-pyrifera_M_contig116734.3465.1 vs. uniprot
Match: A6C2A8_9PLAN (VCBS n=3 Tax=Gimesia maris TaxID=122 RepID=A6C2A8_9PLAN)

HSP 1 Score: 273 bits (698), Expect = 4.560e-82
Identity = 139/155 (89.68%), Postives = 148/155 (95.48%), Query Frame = 1 
Query:    1 SGNIFTVTADNVLFQDMTLQDAAQGIRVDSVVDNLQIDNLSFEGILSGAYGIEIHNSAVLTNLSVVNSFFSGTGGTGIRMASTAVADGIHVNNTEFDGLKNAINEASNNTVAGGHLRDLQVTNSTFQNISDVSIYAEDLRDSNISGNEFFGNPAG 465
            SG +FTV AD+V FQDMTLQ+A QGIRV+SVVDNLQ+DNLSFEGI+SG YGIEIHNSAVLTNLSV NSFFSGTGGTGIRMASTAVADGIHVNNTEFDG+KNAINEASNNTV GGHLRDLQVTNSTFQNISDVSIYAED+RDSNISGN+FFGNPAG
Sbjct:  151 SGILFTVAADDVRFQDMTLQNATQGIRVNSVVDNLQVDNLSFEGIVSGTYGIEIHNSAVLTNLSVANSFFSGTGGTGIRMASTAVADGIHVNNTEFDGMKNAINEASNNTVTGGHLRDLQVTNSTFQNISDVSIYAEDMRDSNISGNDFFGNPAG 305
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BLAST of mRNA_M-pyrifera_M_contig116734.3465.1 vs. uniprot
Match: A0A5A8B5Q8_9PLAN (Beta_helix domain-containing protein (Fragment) n=3 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A5A8B5Q8_9PLAN)

HSP 1 Score: 259 bits (662), Expect = 3.170e-77
Identity = 131/154 (85.06%), Postives = 145/154 (94.16%), Query Frame = 1 
Query:    4 GNIFTVTADNVLFQDMTLQDAAQGIRVDSVVDNLQIDNLSFEGILSGAYGIEIHNSAVLTNLSVVNSFFSGTGGTGIRMASTAVADGIHVNNTEFDGLKNAINEASNNTVAGGHLRDLQVTNSTFQNISDVSIYAEDLRDSNISGNEFFGNPAG 465
            G +FTVTAD+V FQ+MTLQ A QGIRVDS VDNLQ+DN++F GI+SGAYGIEIHN+AVLTNLSV NS+FSGTGGTGIRMA+TAVADGIHV+NT FDG++NAINEASNNTV GGHLRDLQVTNSTFQNISDVSIYAEDLRDS+ISGNEFFGNPAG
Sbjct:  674 GILFTVTADDVSFQNMTLQGATQGIRVDSAVDNLQVDNVNFTGIVSGAYGIEIHNNAVLTNLSVANSYFSGTGGTGIRMATTAVADGIHVDNTTFDGMRNAINEASNNTVTGGHLRDLQVTNSTFQNISDVSIYAEDLRDSSISGNEFFGNPAG 827
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BLAST of mRNA_M-pyrifera_M_contig116734.3465.1 vs. uniprot
Match: A0A517RC45_9PLAN (Beta_helix domain-containing protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RC45_9PLAN)

HSP 1 Score: 146 bits (368), Expect = 1.180e-37
Identity = 82/152 (53.95%), Postives = 110/152 (72.37%), Query Frame = 1 
Query:    1 SGNIFTVTADNVLFQDMTLQDAAQGIRVD---SVVDNLQIDNLSFEGILSGAYGIEIHNSAVLTNLSVVNSFFSGTGGTGIRMASTAVADGIHVNNTEFDGLKNAINEASNNTVAGGHLRDLQVTNSTFQNISDVSIYAEDLRDSNISGNEF 447
            +GN+FTVTA++V FQDMTLQ+A+QGIR +     VD+LQ+DN+ F  + S   GIEIHN   +TN+SV NS F  T  TGIR+AS+AV DGI + NTEFDG      +A++ +   G++RDLQVT STF+N +D +I+AE++RDS I GN F
Sbjct:  535 AGNLFTVTANDVRFQDMTLQNASQGIRAELAAGTVDDLQVDNVHFVNMSSR--GIEIHNDTTVTNMSVTNSLFQNTA-TGIRLASSAVGDGIDITNTEFDGGSLGFYQANDGST--GNVRDLQVTGSTFRNFTDTAIFAEEIRDSAIDGNTF 681
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BLAST of mRNA_M-pyrifera_M_contig116734.3465.1 vs. uniprot
Match: A0A517VAL3_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VAL3_9PLAN)

HSP 1 Score: 130 bits (327), Expect = 3.890e-32
Identity = 76/154 (49.35%), Postives = 106/154 (68.83%), Query Frame = 1 
Query:    4 GNIFTVTADNVLFQDMTLQDAAQGIRV---DSVVDNLQIDNLSFEGILSGAYGIEIHNSAVLTNLSVVNSFFSGTGGTGIRMASTAVADGIHVNNTEFDGLKNAINEASNNTVAGGHLRDLQVTNSTFQNISDVSIYAEDLRDSNISGNEFFGN 456
            G +FTVTAD+V FQDMTLQ+A+QGIR       +DNLQ++N+ F  + S   GIEIHN   +TN++V +S F  TG  GIR +S+AV +GI+++NT FD   N++     N  + G++RDLQVTNSTF+N S  ++YAE++RDS +  N F  N
Sbjct: 1242 GVLFTVTADDVRFQDMTLQNASQGIRTYLPAGTIDNLQVNNVHFVDMSSR--GIEIHNDTTMTNMNVADSLFQNTG-VGIRFSSSAVGNGIYIDNTTFD--TNSLGFYQANDGSTGYVRDLQVTNSTFRNSSFAAVYAEEIRDSIVDDNIFENN 1390
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BLAST of mRNA_M-pyrifera_M_contig116734.3465.1 vs. uniprot
Match: A0A517X1T3_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517X1T3_9PLAN)

HSP 1 Score: 125 bits (315), Expect = 1.590e-30
Identity = 67/152 (44.08%), Postives = 107/152 (70.39%), Query Frame = 1 
Query:    1 SGNIFTVTADNVLFQDMTLQDAAQGIRVD---SVVDNLQIDNLSFEGILSGAYGIEIHNSAVLTNLSVVNSFFSGTGGTGIRMASTAVADGIHVNNTEFDGLKNAINEASNNTVAGGHLRDLQVTNSTFQNISDVSIYAEDLRDSNISGNEF 447
            +GN+F V+AD+V FQ+MTLQ+A+QGIR       +DNL +D++ F G  + + GIEIHN  ++TN++V NS F   G +GIR AS+AV DG+++ ++ FDG      +A++ +   G++RD+Q+T STF+N ++ +++AE++RDS I  N F
Sbjct:  433 AGNLFIVSADDVTFQNMTLQNASQGIRAHLPAGTIDNLLVDDVEFIG--NSSRGIEIHNDTLMTNMTVSNSLFQNNG-SGIRFASSAVGDGVYITDSVFDGGSLGFYQANDGST--GNVRDVQITGSTFRNFTNTAVFAEEIRDSAIDNNTF 579
[Close]
BLAST of mRNA_M-pyrifera_M_contig116734.3465.1 vs. uniprot
Match: A0A355GE40_9PLAN (Beta_helix domain-containing protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A355GE40_9PLAN)

HSP 1 Score: 119 bits (299), Expect = 2.150e-28
Identity = 74/154 (48.05%), Postives = 89/154 (57.79%), Query Frame = 1 
Query:    1 SGNIFTVTADNVLFQDMTLQ--DAAQGIRVDSVVDNLQIDNLSFEGILSGAYGIEIHNSAVLTNLSVVNSFFSGTGGTGIRMASTAVADGIHVNNTEFDGLKNAINEASNNTVAGGHLRDLQVTNSTFQNISDVSIYAEDLRDSNISGNEFFGN 456
            +GN+FTVTAD+V F+DM LQ  +A+QGIRV+S VDNLQ+DN+ F  I    YGIEIHN AVLT                                     L +AINEAS +   GGHL DLQVTNS  +NI++V IYAE+LRDS  S N F  N
Sbjct:   53 TGNLFTVTADDVSFEDMNLQMLNASQGIRVNSAVDNLQVDNVRFSDI--STYGIEIHNDAVLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSSAINEASKSDATGGHLSDLQVTNSQIRNITNVGIYAEELRDSTFSDNTFTDN 204
[Close]
BLAST of mRNA_M-pyrifera_M_contig116734.3465.1 vs. uniprot
Match: A0A2E2C623_9PLAN (Uncharacterized protein n=7 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C623_9PLAN)

HSP 1 Score: 119 bits (299), Expect = 2.270e-28
Identity = 74/154 (48.05%), Postives = 89/154 (57.79%), Query Frame = 1 
Query:    1 SGNIFTVTADNVLFQDMTLQ--DAAQGIRVDSVVDNLQIDNLSFEGILSGAYGIEIHNSAVLTNLSVVNSFFSGTGGTGIRMASTAVADGIHVNNTEFDGLKNAINEASNNTVAGGHLRDLQVTNSTFQNISDVSIYAEDLRDSNISGNEFFGN 456
            +GN+FTVTAD+V F+DM LQ  +A+QGIRV+S VDNLQ+DN+ F  I    YGIEIHN AVLT                                     L +AINEAS +   GGHL DLQVTNS  +NI++V IYAE+LRDS  S N F  N
Sbjct:  430 TGNLFTVTADDVSFEDMNLQMLNASQGIRVNSAVDNLQVDNVRFSDI--STYGIEIHNDAVLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSSAINEASKSDATGGHLSDLQVTNSQIRNITNVGIYAEELRDSTFSDNTFTDN 581
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116734.3465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A2E7K786_9PLAN1.110e-90100.00Uncharacterized protein (Fragment) n=1 Tax=Gimesia... [more]
A0A517PJM8_9PLAN1.110e-90100.00Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
UPI0012D3B9BA4.500e-8289.68pectinesterase family protein n=1 Tax=Gimesia mari... [more]
A6C2A8_9PLAN4.560e-8289.68VCBS n=3 Tax=Gimesia maris TaxID=122 RepID=A6C2A8_... [more]
A0A5A8B5Q8_9PLAN3.170e-7785.06Beta_helix domain-containing protein (Fragment) n=... [more]
A0A517RC45_9PLAN1.180e-3753.95Beta_helix domain-containing protein n=1 Tax=Gimes... [more]
A0A517VAL3_9PLAN3.890e-3249.35Uncharacterized protein n=1 Tax=Gimesia algae TaxI... [more]
A0A517X1T3_9PLAN1.590e-3044.08Uncharacterized protein n=2 Tax=Gimesia aquarii Ta... [more]
A0A355GE40_9PLAN2.150e-2848.05Beta_helix domain-containing protein (Fragment) n=... [more]
A0A2E2C623_9PLAN2.270e-2848.05Uncharacterized protein n=7 Tax=Planctomycetaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116734contigM-pyrifera_M_contig116734:23..487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score275.4
Seed ortholog evalue1.6e-71
Seed eggNOG ortholog344747.PM8797T_03194
KEGG koko:K01317,ko:K15125
KEGG Pathwayko05133,map05133
Hectar predicted targeting categoryother localisation
EggNOG free text desc.TIGRFAM autotransporter-associated beta strand repeat protein
EggNOG OGs2IYDY@203682,COG1572@1,COG1572@2,COG2931@1,COG2931@2,COG3210@1,COG3210@2,COG3420@1,COG3420@2,COG4625@1,COG4625@2
EC3.4.21.10
COG Functional cat.QU
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko01000,ko01002,ko04131
Exons1
Model size465
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815684.044074-CDS-M-pyrifera_M_contig116734:22..4871622815684.044074-CDS-M-pyrifera_M_contig116734:22..487Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116734 23..487 +
1692277520.441156-CDS-M-pyrifera_M_contig116734:22..4871692277520.441156-CDS-M-pyrifera_M_contig116734:22..487Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116734 23..487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116734.3465.1prot_M-pyrifera_M_contig116734.3465.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116734 23..487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116734.3465.1

>prot_M-pyrifera_M_contig116734.3465.1 ID=prot_M-pyrifera_M_contig116734.3465.1|Name=mRNA_M-pyrifera_M_contig116734.3465.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
SGNIFTVTADNVLFQDMTLQDAAQGIRVDSVVDNLQIDNLSFEGILSGAY
GIEIHNSAVLTNLSVVNSFFSGTGGTGIRMASTAVADGIHVNNTEFDGLK
NAINEASNNTVAGGHLRDLQVTNSTFQNISDVSIYAEDLRDSNISGNEFF
GNPAG
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mRNA from alignment at M-pyrifera_M_contig116734:23..487+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116734.3465.1 ID=mRNA_M-pyrifera_M_contig116734.3465.1|Name=mRNA_M-pyrifera_M_contig116734.3465.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=465bp|location=Sequence derived from alignment at M-pyrifera_M_contig116734:23..487+ (Macrocystis pyrifera P11B4 male)
TCAGGCAACATCTTCACCGTAACTGCAGACAATGTTCTGTTCCAGGATAT
GACGCTGCAGGATGCGGCCCAGGGGATTCGTGTCGATTCTGTTGTAGACA
ATTTGCAGATCGATAACCTCAGTTTCGAAGGTATCTTATCTGGTGCCTAT
GGTATTGAGATCCATAATAGTGCTGTATTAACGAATCTGAGTGTCGTTAA
CAGTTTCTTCTCAGGTACCGGTGGCACTGGAATTAGGATGGCGTCGACTG
CTGTCGCTGATGGAATTCATGTCAATAATACTGAGTTTGATGGGTTGAAG
AATGCCATCAATGAGGCGAGCAATAATACTGTGGCTGGCGGCCATCTGCG
CGATCTGCAGGTCACCAATTCGACTTTCCAGAATATAAGTGATGTCAGCA
TCTATGCAGAAGACTTGCGCGATTCGAACATCAGCGGCAATGAATTTTTT
GGAAACCCGGCGGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116734:23..487+

>mRNA_M-pyrifera_M_contig116734.3465.1 ID=mRNA_M-pyrifera_M_contig116734.3465.1|Name=mRNA_M-pyrifera_M_contig116734.3465.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig116734:23..487+ (Macrocystis pyrifera P11B4 male)
TCAGGCAACATCTTCACCGTAACTGCAGACAATGTTCTGTTCCAGGATAT
GACGCTGCAGGATGCGGCCCAGGGGATTCGTGTCGATTCTGTTGTAGACA
ATTTGCAGATCGATAACCTCAGTTTCGAAGGTATCTTATCTGGTGCCTAT
GGTATTGAGATCCATAATAGTGCTGTATTAACGAATCTGAGTGTCGTTAA
CAGTTTCTTCTCAGGTACCGGTGGCACTGGAATTAGGATGGCGTCGACTG
CTGTCGCTGATGGAATTCATGTCAATAATACTGAGTTTGATGGGTTGAAG
AATGCCATCAATGAGGCGAGCAATAATACTGTGGCTGGCGGCCATCTGCG
CGATCTGCAGGTCACCAATTCGACTTTCCAGAATATAAGTGATGTCAGCA
TCTATGCAGAAGACTTGCGCGATTCGAACATCAGCGGCAATGAATTTTTT
GGAAACCCGGCGGGCTCAGGCAACATCTTCACCGTAACTGCAGACAATGT
TCTGTTCCAGGATATGACGCTGCAGGATGCGGCCCAGGGGATTCGTGTCG
ATTCTGTTGTAGACAATTTGCAGATCGATAACCTCAGTTTCGAAGGTATC
TTATCTGGTGCCTATGGTATTGAGATCCATAATAGTGCTGTATTAACGAA
TCTGAGTGTCGTTAACAGTTTCTTCTCAGGTACCGGTGGCACTGGAATTA
GGATGGCGTCGACTGCTGTCGCTGATGGAATTCATGTCAATAATACTGAG
TTTGATGGGTTGAAGAATGCCATCAATGAGGCGAGCAATAATACTGTGGC
TGGCGGCCATCTGCGCGATCTGCAGGTCACCAATTCGACTTTCCAGAATA
TAAGTGATGTCAGCATCTATGCAGAAGACTTGCGCGATTCGAACATCAGC
GGCAATGAATTTTTTGGAAACCCGGCGGGC
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