mRNA_M-pyrifera_M_contig116392.3402.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116392.3402.1
Unique NamemRNA_M-pyrifera_M_contig116392.3402.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116392.3402.1 vs. uniprot
Match: A0A8K0P5S0_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0P5S0_LADFU)

HSP 1 Score: 65.5 bits (158), Expect = 6.260e-10
Identity = 38/110 (34.55%), Postives = 60/110 (54.55%), Query Frame = 1
Query:   40 AAESKEDTLSLAGSGLVEFPVALLKCGSLTK-LDLTHNKVPTLPDGLGSACVLLKCLVLQNNALSTLPESFSALEQLEVLDLSTNNFSVFPPALQQLPALKELTMEGNDL 366
            A  +  +++ L+ + L E P  L   G   K L+L+ N++ ++P  LG  C  L+ + LQ N+L  LP+ FS+L  L  L ++ N F   P  L+QLPAL+ L    N +
Sbjct:  440 AGAANANSIDLSRNILPEVPYGLFTLGQCLKDLNLSSNRLTSIPPDLGLTCTHLQFIDLQKNSLEVLPQEFSSLTSLRELIIAFNKFKSLPACLKQLPALEILIARDNQI 549          
BLAST of mRNA_M-pyrifera_M_contig116392.3402.1 vs. uniprot
Match: A0A4T0J5D1_WALIC (Adenylate cyclase n=3 Tax=Wallemia ichthyophaga TaxID=245174 RepID=A0A4T0J5D1_WALIC)

HSP 1 Score: 64.3 bits (155), Expect = 1.740e-9
Identity = 42/111 (37.84%), Postives = 64/111 (57.66%), Query Frame = 1
Query:   31 VQLAAESKEDTLSLAGSGLVEFPVALLKCGSLTKLDLTHNKVPTLPDGLGSACV-LLKCLVLQNNALSTLPESFSALEQLEVLDLSTNNFSVFPPALQQLPALKELTMEGN 360
            +QL    +E  LS+     + +P   L C SLT+LD++ N++P L D +   C+  L+ L +QNN L+ LPES S L+ L+ L++S N F VFP  + +L  L +L    N
Sbjct: 1210 IQLCTSLRELKLSMVSMKRL-WPSVRLYCRSLTRLDMSCNRMPEL-DHIDFKCLPKLRSLKVQNNRLTQLPESLSELKHLKYLNISNNKFDVFPRVVCKLTGLDDLDASFN 1318          
BLAST of mRNA_M-pyrifera_M_contig116392.3402.1 vs. uniprot
Match: S4RD87_PETMA (PH domain-containing protein n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RD87_PETMA)

HSP 1 Score: 57.8 bits (138), Expect = 2.540e-7
Identity = 41/101 (40.59%), Postives = 53/101 (52.48%), Query Frame = 1
Query:   61 TLSLAGSGLVEFPVALLKCGSLTKLDLTHNKV-PTLPDGLGSACVLLKCLVLQNNALSTLPESFSALEQLEVLDLSTNNFSVFPPALQQLPALKELTMEGN 360
            ++ L+   L E P  L     +T L+L HN + P + D L   C L + LVL  NALSTLPE    L+ L  L LS N F   PP  Q L AL+ + + GN
Sbjct:  112 SVDLSCCNLEELPEPLFHSQDVTHLNLRHNLLGPGIGDTLLCVCSL-QSLVLDCNALSTLPEELRNLQSLVYLGLSFNFFERMPPICQGLLALERVCLAGN 211          
BLAST of mRNA_M-pyrifera_M_contig116392.3402.1 vs. uniprot
Match: A0A8B7IFM0_9AVES (LOW QUALITY PROTEIN: leucine-rich repeat and death domain-containing protein 1 n=3 Tax=Palaeognathae TaxID=8783 RepID=A0A8B7IFM0_9AVES)

HSP 1 Score: 57.0 bits (136), Expect = 5.960e-7
Identity = 34/99 (34.34%), Postives = 55/99 (55.56%), Query Frame = 1
Query:   76 GSGLVEFPVALLKCGSLTKLDLTHNKVPTLPDGLGSACVLLKCLVLQNNALSTLPESFSALEQLEVLDLSTNNFSVF--PPALQQLPALKELTMEGNDL 366
            G  L + P  + K   L +LD++HN +  +PDG+G    L+  L+  NN +S LP+S ++L  L+ LDLS   + +   P  L+ L  L ++  +GN L
Sbjct:  652 GLKLTKVPEEISKLICLRELDISHNALKEVPDGVGELEYLVH-LIANNNDISQLPKSITSLGNLQQLDLSGKKYCLISLPAGLRHLHLLTDINFDGNTL 749          
BLAST of mRNA_M-pyrifera_M_contig116392.3402.1 vs. uniprot
Match: A0A0D2ENY9_9EURO (Adenylate cyclase n=2 Tax=Exophiala TaxID=5583 RepID=A0A0D2ENY9_9EURO)

HSP 1 Score: 56.2 bits (134), Expect = 1.160e-6
Identity = 39/123 (31.71%), Postives = 55/123 (44.72%), Query Frame = 1
Query:   64 LSLAGSGLVEFPVALLKCGSLTKLDLTHNKVPTLPDGLGSACVLLKCLVLQNNALSTLPESFSALEQLEVLDLSTNNFSVFP----------------------PALQQLPALKELTMEGNDL 366
            +   G+     P +L     LT LD+++N++  L        + L  L L NN LS LP SFS   QL  L+LS+NNF++FP                      P + QL  L+ L +  NDL
Sbjct:  678 IKFTGNEAWRLPPSLAWASRLTVLDVSNNRLEQLDQAELHRLMALVSLKLANNRLSQLPPSFSHFRQLRSLNLSSNNFTIFPEHICNLRXXXXXXXXXXXXXXLPKISQLTTLERLWVTNNDL 800          
BLAST of mRNA_M-pyrifera_M_contig116392.3402.1 vs. uniprot
Match: M5EBL0_MALS4 (Uncharacterized protein n=1 Tax=Malassezia sympodialis (strain ATCC 42132) TaxID=1230383 RepID=M5EBL0_MALS4)

HSP 1 Score: 55.8 bits (133), Expect = 1.550e-6
Identity = 41/121 (33.88%), Postives = 55/121 (45.45%), Query Frame = 1
Query:   64 LSLAGSGLVEFPVALLKCGSLTKLDLTHNKVPTLPDGLGSACVLLKCLVLQNN----------------------ALSTLPESFSALEQLEVLDLSTNNFSVFPPALQQLPALKELTMEGN 360
            L LA + L    +      +LT+LDL+H  + TLPD L S+  +L  LVL +N                      AL+ +PES   L  L  LDL  NN    PP+L    AL+EL +  N
Sbjct:  288 LELAHNPLSRAALQAPAASALTRLDLSHASLVTLPDSLLSSVPVLTHLVLDDNQLGALPALEALTRLKVLSCAANALTGVPESIGVLSALVRLDLHNNNVRALPPSLWACKALRELNVSSN 408          
BLAST of mRNA_M-pyrifera_M_contig116392.3402.1 vs. uniprot
Match: A0A1M8A3E1_MALS4 (Adenylate cyclase n=1 Tax=Malassezia sympodialis (strain ATCC 42132) TaxID=1230383 RepID=A0A1M8A3E1_MALS4)

HSP 1 Score: 55.8 bits (133), Expect = 1.580e-6
Identity = 41/121 (33.88%), Postives = 55/121 (45.45%), Query Frame = 1
Query:   64 LSLAGSGLVEFPVALLKCGSLTKLDLTHNKVPTLPDGLGSACVLLKCLVLQNN----------------------ALSTLPESFSALEQLEVLDLSTNNFSVFPPALQQLPALKELTMEGN 360
            L LA + L    +      +LT+LDL+H  + TLPD L S+  +L  LVL +N                      AL+ +PES   L  L  LDL  NN    PP+L    AL+EL +  N
Sbjct:  807 LELAHNPLSRAALQAPAASALTRLDLSHASLVTLPDSLLSSVPVLTHLVLDDNQLGALPALEALTRLKVLSCAANALTGVPESIGVLSALVRLDLHNNNVRALPPSLWACKALRELNVSSN 927          
BLAST of mRNA_M-pyrifera_M_contig116392.3402.1 vs. uniprot
Match: G1KRH6_ANOCA (Uncharacterized protein n=3 Tax=Episquamata TaxID=1329912 RepID=G1KRH6_ANOCA)

HSP 1 Score: 54.3 bits (129), Expect = 3.120e-6
Identity = 35/81 (43.21%), Postives = 43/81 (53.09%), Query Frame = 1
Query:   28 KVQLAAESKEDTLSLAGSGLVEFPVALLKCGS-LTKLDLTHNKVPTLPDGLGSACVLLKCLVLQNNALSTLPESFSALEQL 267
            K  L    K     L G GL EFP  L K  S L  +DL++NK+ TLP  +G  CVL K L L +N L  LPE    L++L
Sbjct:    7 KAHLETAQKTGVFQLTGKGLSEFPEDLQKLASNLRTIDLSNNKIETLPPLMGKFCVL-KSLALNHNKLIALPEELCKLKKL 86          
BLAST of mRNA_M-pyrifera_M_contig116392.3402.1 vs. uniprot
Match: A0A087US52_STEMI (Leucine-rich repeat-containing protein 20 (Fragment) n=2 Tax=Stegodyphus TaxID=175340 RepID=A0A087US52_STEMI)

HSP 1 Score: 53.9 bits (128), Expect = 3.260e-6
Identity = 42/121 (34.71%), Postives = 64/121 (52.89%), Query Frame = 1
Query:   19 VGKKVQLAAESKED-TLSLAGSGLVEFPVA---LLKCGSLTKLDLTHNKVPTLPDGLGSACVLLKCLVLQNNALSTLPESFSALEQLEVLDLSTNNFSVFPPALQQLPALKELTMEGNDLV 369
            V K V     +KED  L+L+   L+ FP A   L++   L   DL+ N    +P  L      +  L L +N L++LPE    L++L+ LDLS N+F VFP  + ++P L  L ++ N +V
Sbjct:   20 VTKVVHRCYTAKEDRNLNLSECQLMSFPEAVYHLMRNTVLQTCDLSSNVFRKIPPQLPIKFERITELNLSHNRLTSLPEELKDLKELQKLDLSHNDFLVFPKVVFKIPHLVFLNLKKNFIV 140          
BLAST of mRNA_M-pyrifera_M_contig116392.3402.1 vs. uniprot
Match: A0A5N5DHZ0_9PEZI (Leucine-rich repeat and death domain-containing protein 1 n=2 Tax=Lasiodiplodia theobromae TaxID=45133 RepID=A0A5N5DHZ0_9PEZI)

HSP 1 Score: 54.7 bits (130), Expect = 3.880e-6
Identity = 33/102 (32.35%), Postives = 55/102 (53.92%), Query Frame = 1
Query:   61 TLSLAGSGLVEFPVALLKCGSLTKLDLTHNKVPTLPDGLGSACVLLKCLVLQNNALSTLPESFSALEQLEVLDLSTNNFSVFPPALQQLPALKELTMEGNDL 366
            TL LAG+ L     + L   +L  L+L+ N++ TLPD  G   +L   L+++ N LS  P  F++L+ L+  + + NN +   P +  + +L  LT+  N L
Sbjct:  700 TLDLAGNALTSLGPSTLSMPALKSLNLSINRIETLPDLTGWTNLLT--LLVEENKLSEFPTGFTSLKSLKQANFNGNNITKIEPEIALMDSLDMLTLAANPL 799          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116392.3402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8K0P5S0_LADFU6.260e-1034.55Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
A0A4T0J5D1_WALIC1.740e-937.84Adenylate cyclase n=3 Tax=Wallemia ichthyophaga Ta... [more]
S4RD87_PETMA2.540e-740.59PH domain-containing protein n=1 Tax=Petromyzon ma... [more]
A0A8B7IFM0_9AVES5.960e-734.34LOW QUALITY PROTEIN: leucine-rich repeat and death... [more]
A0A0D2ENY9_9EURO1.160e-631.71Adenylate cyclase n=2 Tax=Exophiala TaxID=5583 Rep... [more]
M5EBL0_MALS41.550e-633.88Uncharacterized protein n=1 Tax=Malassezia sympodi... [more]
A0A1M8A3E1_MALS41.580e-633.88Adenylate cyclase n=1 Tax=Malassezia sympodialis (... [more]
G1KRH6_ANOCA3.120e-643.21Uncharacterized protein n=3 Tax=Episquamata TaxID=... [more]
A0A087US52_STEMI3.260e-634.71Leucine-rich repeat-containing protein 20 (Fragmen... [more]
A0A5N5DHZ0_9PEZI3.880e-632.35Leucine-rich repeat and death domain-containing pr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116392contigM-pyrifera_M_contig116392:160..528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score64.3
Seed ortholog evalue4.5e-08
Seed eggNOG ortholog59463.ENSMLUP00000020895
Preferred nameLRRC20
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Leucine-rich repeat-containing protein 20
EggNOG OGs39WFU@33154,3BIPD@33208,3D0UI@33213,3J7VV@40674,4871A@7711,48YKB@7742,4KREX@9397,COG4886@1,KOG4579@2759
COG Functional cat.S
Best tax levelChiroptera
Best eggNOG OGNA|NA|NA
Exons1
Model size369
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815681.1331074-CDS-M-pyrifera_M_contig116392:159..5281622815681.1331074-CDS-M-pyrifera_M_contig116392:159..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116392 160..528 +
1692277519.0906072-CDS-M-pyrifera_M_contig116392:159..5281692277519.0906072-CDS-M-pyrifera_M_contig116392:159..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116392 160..528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116392.3402.1prot_M-pyrifera_M_contig116392.3402.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116392 160..528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116392.3402.1

>prot_M-pyrifera_M_contig116392.3402.1 ID=prot_M-pyrifera_M_contig116392.3402.1|Name=mRNA_M-pyrifera_M_contig116392.3402.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
ADSAELVGKKVQLAAESKEDTLSLAGSGLVEFPVALLKCGSLTKLDLTHN
KVPTLPDGLGSACVLLKCLVLQNNALSTLPESFSALEQLEVLDLSTNNFS
VFPPALQQLPALKELTMEGNDLV
back to top

mRNA from alignment at M-pyrifera_M_contig116392:160..528+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116392.3402.1 ID=mRNA_M-pyrifera_M_contig116392.3402.1|Name=mRNA_M-pyrifera_M_contig116392.3402.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=369bp|location=Sequence derived from alignment at M-pyrifera_M_contig116392:160..528+ (Macrocystis pyrifera P11B4 male)
GCAGACTCGGCCGAGCTCGTCGGCAAGAAGGTACAGTTGGCCGCAGAGAG CAAGGAAGATACTCTCTCTCTCGCTGGCTCTGGCCTTGTGGAGTTCCCTG TCGCTCTCTTGAAGTGTGGGAGTCTGACCAAGCTCGACCTCACCCACAAC AAGGTGCCAACGCTCCCTGACGGCCTGGGCTCCGCCTGTGTACTGCTGAA GTGTCTGGTGCTGCAGAACAACGCTCTCAGCACACTCCCAGAGAGCTTCT CTGCGCTGGAGCAGCTGGAGGTGCTCGACCTCTCCACCAACAACTTCTCT GTCTTCCCTCCCGCTCTCCAGCAGCTGCCAGCGCTCAAGGAGCTCACCAT GGAGGGCAACGACCTCGTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig116392:160..528+

>mRNA_M-pyrifera_M_contig116392.3402.1 ID=mRNA_M-pyrifera_M_contig116392.3402.1|Name=mRNA_M-pyrifera_M_contig116392.3402.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig116392:160..528+ (Macrocystis pyrifera P11B4 male)
GCAGACTCGGCCGAGCTCGTCGGCAAGAAGGTACAGTTGGCCGCAGAGAG
CAAGGAAGATACTCTCTCTCTCGCTGGCTCTGGCCTTGTGGAGTTCCCTG
TCGCTCTCTTGAAGTGTGGGAGTCTGACCAAGCTCGACCTCACCCACAAC
AAGGTGCCAACGCTCCCTGACGGCCTGGGCTCCGCCTGTGTACTGCTGAA
GTGTCTGGTGCTGCAGAACAACGCTCTCAGCACACTCCCAGAGAGCTTCT
CTGCGCTGGAGCAGCTGGAGGTGCTCGACCTCTCCACCAACAACTTCTCT
GTCTTCCCTCCCGCTCTCCAGCAGCTGCCAGCGCTCAAGGAGCTCACCAT
GGAGGGCAACGACCTCGTGGCAGACTCGGCCGAGCTCGTCGGCAAGAAGG
TACAGTTGGCCGCAGAGAGCAAGGAAGATACTCTCTCTCTCGCTGGCTCT
GGCCTTGTGGAGTTCCCTGTCGCTCTCTTGAAGTGTGGGAGTCTGACCAA
GCTCGACCTCACCCACAACAAGGTGCCAACGCTCCCTGACGGCCTGGGCT
CCGCCTGTGTACTGCTGAAGTGTCTGGTGCTGCAGAACAACGCTCTCAGC
ACACTCCCAGAGAGCTTCTCTGCGCTGGAGCAGCTGGAGGTGCTCGACCT
CTCCACCAACAACTTCTCTGTCTTCCCTCCCGCTCTCCAGCAGCTGCCAG
CGCTCAAGGAGCTCACCATGGAGGGCAACGACCTCGTG
back to top