mRNA_M-pyrifera_M_contig116381.3399.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116381.3399.1
Unique NamemRNA_M-pyrifera_M_contig116381.3399.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig116381.3399.1 vs. uniprot
Match: A0A6A5BG92_NAEFO (TFIID_20kDa domain-containing protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BG92_NAEFO)

HSP 1 Score: 83.6 bits (205), Expect = 3.450e-19
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 LMTALAEDFIESVTTFACGLAKHRKSDTLEVKDLKLHLEREWNISIPGF 147
            ++  +A+DFIESVTTFAC LAKHR SDTLEVKDL+LHLE+ WN+ IPGF
Sbjct:   36 ILLEIADDFIESVTTFACSLAKHRGSDTLEVKDLQLHLEKNWNVKIPGF 84
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BLAST of mRNA_M-pyrifera_M_contig116381.3399.1 vs. uniprot
Match: A0A4P9XQP7_9FUNG (Transcription initiation factor TFIID subunit A-domain-containing protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XQP7_9FUNG)

HSP 1 Score: 82.8 bits (203), Expect = 5.090e-19
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 LMTALAEDFIESVTTFACGLAKHRKSDTLEVKDLKLHLEREWNISIPGF 147
            ++  +A++FIESVT FAC LAKHRKSDTLEVKDL+LHLER WNI IPGF
Sbjct:   30 ILLEVADEFIESVTAFACRLAKHRKSDTLEVKDLQLHLERNWNIRIPGF 78
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BLAST of mRNA_M-pyrifera_M_contig116381.3399.1 vs. uniprot
Match: A0A1C7NL44_9FUNG (Transcription initiation factor TFIID subunit 12 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7NL44_9FUNG)

HSP 1 Score: 86.3 bits (212), Expect = 5.960e-19
Identity = 40/60 (66.67%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 LMTALAEDFIESVTTFACGLAKHRKSDTLEVKDLKLHLEREWNISIPGFPCVRLPPLPSP 180
            ++  +A++FIESVTTFAC LAKHRKSDTLEVKD++LHLER WNI IPGF    + PL  P
Sbjct:  182 ILLEIADEFIESVTTFACQLAKHRKSDTLEVKDVQLHLERNWNIRIPGFAADDIRPLRKP 241
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BLAST of mRNA_M-pyrifera_M_contig116381.3399.1 vs. uniprot
Match: A0A1X2HLF8_SYNRA (Transcription initiation factor TFIID subunit A-domain-containing protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HLF8_SYNRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.530e-18
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 LMTALAEDFIESVTTFACGLAKHRKSDTLEVKDLKLHLEREWNISIPGF 147
            ++  +A++FIES T FAC LAKHRKSDTLEVKDL+LHLER WNI IPGF
Sbjct:   42 ILLEIADEFIESTTAFACRLAKHRKSDTLEVKDLQLHLERNWNIRIPGF 90
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BLAST of mRNA_M-pyrifera_M_contig116381.3399.1 vs. uniprot
Match: I1BJ50_RHIO9 (TFIID_20kDa domain-containing protein n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1BJ50_RHIO9)

HSP 1 Score: 86.3 bits (212), Expect = 1.830e-18
Identity = 40/60 (66.67%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 LMTALAEDFIESVTTFACGLAKHRKSDTLEVKDLKLHLEREWNISIPGFPCVRLPPLPSP 180
            ++  +A++FIESVTTFAC LAKHRKSDTLEVKD++LHLER WNI IPGF    + PL  P
Sbjct:  305 ILLEIADEFIESVTTFACRLAKHRKSDTLEVKDVQLHLERNWNIRIPGFAADDIRPLRKP 364
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BLAST of mRNA_M-pyrifera_M_contig116381.3399.1 vs. uniprot
Match: A0A0B7NDU9_9FUNG (TFIID_20kDa domain-containing protein n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7NDU9_9FUNG)

HSP 1 Score: 86.3 bits (212), Expect = 1.910e-18
Identity = 40/60 (66.67%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 LMTALAEDFIESVTTFACGLAKHRKSDTLEVKDLKLHLEREWNISIPGFPCVRLPPLPSP 180
            ++  +A++FIESVTTFAC LAKHRKSDTLEVKD++LHLER WNI IPGF    + PL  P
Sbjct:  308 ILLEIADEFIESVTTFACQLAKHRKSDTLEVKDVQLHLERNWNIRIPGFAADDIRPLRKP 367
[Close]
BLAST of mRNA_M-pyrifera_M_contig116381.3399.1 vs. uniprot
Match: A0A1X0S9I0_RHIZD (TFIID_20kDa domain-containing protein n=4 Tax=Rhizopus TaxID=4842 RepID=A0A1X0S9I0_RHIZD)

HSP 1 Score: 86.3 bits (212), Expect = 1.920e-18
Identity = 40/60 (66.67%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 LMTALAEDFIESVTTFACGLAKHRKSDTLEVKDLKLHLEREWNISIPGFPCVRLPPLPSP 180
            ++  +A++FIESVTTFAC LAKHRKSDTLEVKD++LHLER WNI IPGF    + PL  P
Sbjct:  315 ILLEIADEFIESVTTFACRLAKHRKSDTLEVKDVQLHLERNWNIRIPGFAADDIRPLRKP 374
[Close]
BLAST of mRNA_M-pyrifera_M_contig116381.3399.1 vs. uniprot
Match: A0A8H7PGB1_MORIS (TFIID_20kDa domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PGB1_MORIS)

HSP 1 Score: 85.1 bits (209), Expect = 2.070e-18
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 LMTALAEDFIESVTTFACGLAKHRKSDTLEVKDLKLHLEREWNISIPGF 147
            ++  +A++FIESVTTFAC LAKHRKSDTLEVKDL+LHLER WNI IPGF
Sbjct:  206 ILLEIADEFIESVTTFACRLAKHRKSDTLEVKDLQLHLERNWNIRIPGF 254
[Close]
BLAST of mRNA_M-pyrifera_M_contig116381.3399.1 vs. uniprot
Match: S2J475_MUCC1 (TFIID_20kDa domain-containing protein n=2 Tax=Mucor TaxID=4830 RepID=S2J475_MUCC1)

HSP 1 Score: 86.3 bits (212), Expect = 2.100e-18
Identity = 40/60 (66.67%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 LMTALAEDFIESVTTFACGLAKHRKSDTLEVKDLKLHLEREWNISIPGFPCVRLPPLPSP 180
            ++  +A++FIESVTTFAC LAKHRKSDTLEVKD++LHLER WNI IPGF    + PL  P
Sbjct:  328 ILLEIADEFIESVTTFACQLAKHRKSDTLEVKDVQLHLERNWNIRIPGFAADDIRPLRKP 387
[Close]
BLAST of mRNA_M-pyrifera_M_contig116381.3399.1 vs. uniprot
Match: A0A0C9MY18_9FUNG (Transcription initiation factor TFIID subunit 12 isoform X2 n=1 Tax=Mucor ambiguus TaxID=91626 RepID=A0A0C9MY18_9FUNG)

HSP 1 Score: 86.3 bits (212), Expect = 2.110e-18
Identity = 40/60 (66.67%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 LMTALAEDFIESVTTFACGLAKHRKSDTLEVKDLKLHLEREWNISIPGFPCVRLPPLPSP 180
            ++  +A++FIESVTTFAC LAKHRKSDTLEVKD++LHLER WNI IPGF    + PL  P
Sbjct:  329 ILLEIADEFIESVTTFACQLAKHRKSDTLEVKDVQLHLERNWNIRIPGFAADDIRPLRKP 388
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116381.3399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A5BG92_NAEFO3.450e-1973.47TFIID_20kDa domain-containing protein n=2 Tax=Naeg... [more]
A0A4P9XQP7_9FUNG5.090e-1975.51Transcription initiation factor TFIID subunit A-do... [more]
A0A1C7NL44_9FUNG5.960e-1966.67Transcription initiation factor TFIID subunit 12 n... [more]
A0A1X2HLF8_SYNRA1.530e-1873.47Transcription initiation factor TFIID subunit A-do... [more]
I1BJ50_RHIO91.830e-1866.67TFIID_20kDa domain-containing protein n=1 Tax=Rhiz... [more]
A0A0B7NDU9_9FUNG1.910e-1866.67TFIID_20kDa domain-containing protein n=1 Tax=Para... [more]
A0A1X0S9I0_RHIZD1.920e-1866.67TFIID_20kDa domain-containing protein n=4 Tax=Rhiz... [more]
A0A8H7PGB1_MORIS2.070e-1877.55TFIID_20kDa domain-containing protein n=1 Tax=Mort... [more]
S2J475_MUCC12.100e-1866.67TFIID_20kDa domain-containing protein n=2 Tax=Muco... [more]
A0A0C9MY18_9FUNG2.110e-1866.67Transcription initiation factor TFIID subunit 12 i... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116381contigM-pyrifera_M_contig116381:306..485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score85.1
Seed ortholog evalue1.2e-14
Seed eggNOG ortholog36080.S2J475
Preferred nameTAF12
KEGG koko:K03126
KEGG Pathwayko03022,map03022
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000123,GO:0000124,GO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0000988,GO:0000990,GO:0000991,GO:0001085,GO:0001102,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005694,GO:0006139,GO:0006325,GO:0006338,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006996,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016043,GO:0016070,GO:0016569,GO:0016570,GO:0016573,GO:0016591,GO:0017025,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022607,GO:0030880,GO:0031248,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032947,GO:0032991,GO:0033613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043933,GO:0043966,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044798,GO:0046483,GO:0046695,GO:0050789,GO:0050794,GO:0051123,GO:0051171,GO:0051252,GO:0051276,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070461,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902493,GO:1902494,GO:1903506,GO:1905368,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.Transcription initiation factor TFIID subunit A
EggNOG OGs1GTX1@112252,39SFE@33154,3NYSW@4751,COG5624@1,KOG1142@2759
COG Functional cat.K
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03036
Exons1
Model size180
Cds size177
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815681.0070713-CDS-M-pyrifera_M_contig116381:305..4821622815681.0070713-CDS-M-pyrifera_M_contig116381:305..482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116381 306..482 -
1692277519.0441163-CDS-M-pyrifera_M_contig116381:305..4821692277519.0441163-CDS-M-pyrifera_M_contig116381:305..482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116381 306..482 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815681.0217953-UTR-M-pyrifera_M_contig116381:482..4851622815681.0217953-UTR-M-pyrifera_M_contig116381:482..485Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116381 483..485 -
1692277519.058452-UTR-M-pyrifera_M_contig116381:482..4851692277519.058452-UTR-M-pyrifera_M_contig116381:482..485Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116381 483..485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116381.3399.1prot_M-pyrifera_M_contig116381.3399.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116381 306..482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116381.3399.1

>prot_M-pyrifera_M_contig116381.3399.1 ID=prot_M-pyrifera_M_contig116381.3399.1|Name=mRNA_M-pyrifera_M_contig116381.3399.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=59bp
MTALAEDFIESVTTFACGLAKHRKSDTLEVKDLKLHLEREWNISIPGFPC
VRLPPLPSP
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mRNA from alignment at M-pyrifera_M_contig116381:306..485-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116381.3399.1 ID=mRNA_M-pyrifera_M_contig116381.3399.1|Name=mRNA_M-pyrifera_M_contig116381.3399.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=180bp|location=Sequence derived from alignment at M-pyrifera_M_contig116381:306..485- (Macrocystis pyrifera P11B4 male)
CTCATGACTGCTCTGGCGGAGGACTTCATTGAGAGTGTGACGACGTTCGC
CTGTGGCCTTGCGAAGCACAGGAAGAGCGACACGCTCGAGGTGAAGGACC
TCAAGCTCCACCTGGAGCGCGAGTGGAACATCAGCATCCCTGGCTTCCCC
TGCGTACGCCTCCCCCCACTCCCCTCTCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116381:306..485-

>mRNA_M-pyrifera_M_contig116381.3399.1 ID=mRNA_M-pyrifera_M_contig116381.3399.1|Name=mRNA_M-pyrifera_M_contig116381.3399.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig116381:306..485- (Macrocystis pyrifera P11B4 male)
ATGACTGCTCTGGCGGAGGACTTCATTGAGAGTGTGACGACGTTCGCCTG
TGGCCTTGCGAAGCACAGGAAGAGCGACACGCTCGAGGTGAAGGACCTCA
AGCTCCACCTGGAGCGCGAGTGGAACATCAGCATCCCTGGCTTCCCCTGC
GTACGCCTCCCCCCACTCCCCTCTCCCATGACTGCTCTGGCGGAGGACTT
CATTGAGAGTGTGACGACGTTCGCCTGTGGCCTTGCGAAGCACAGGAAGA
GCGACACGCTCGAGGTGAAGGACCTCAAGCTCCACCTGGAGCGCGAGTGG
AACATCAGCATCCCTGGCTTCCCCTGCGTACGCCTCCCCCCACTCCCCTC
TCCC
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