mRNA_M-pyrifera_M_contig116228.3369.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116228.3369.1
Unique NamemRNA_M-pyrifera_M_contig116228.3369.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116228.3369.1 vs. uniprot
Match: A0A6I6AEV1_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A6I6AEV1_9PLAN)

HSP 1 Score: 185 bits (469), Expect = 6.650e-53
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 1
Query:    1 ITRGTIKSSPVERPKSVASQIARSGVVRNKMEKAFPDRVEDAQIKAKLENRTVYLHIKDIVANDGWLTLTIGNDLTVEKNETELPPPVEKTASVK 285
            ITRGTIKSSPVERPKSVASQIARSGVVRNKMEKAFPDRVEDAQ+KAKLENRTVYLHIKDIVANDGWLTLTIGNDLTVEKNETELPPPVEKTASVK
Sbjct:  656 ITRGTIKSSPVERPKSVASQIARSGVVRNKMEKAFPDRVEDAQVKAKLENRTVYLHIKDIVANDGWLTLTIGNDLTVEKNETELPPPVEKTASVK 750          
BLAST of mRNA_M-pyrifera_M_contig116228.3369.1 vs. uniprot
Match: A0A517PZM8_9PLAN (Uncharacterized protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517PZM8_9PLAN)

HSP 1 Score: 164 bits (416), Expect = 1.900e-45
Identity = 82/95 (86.32%), Postives = 89/95 (93.68%), Query Frame = 1
Query:    1 ITRGTIKSSPVERPKSVASQIARSGVVRNKMEKAFPDRVEDAQIKAKLENRTVYLHIKDIVANDGWLTLTIGNDLTVEKNETELPPPVEKTASVK 285
            ITRGT+KSSPVERPKSVA+QIAR+GVVR+KMEKAFPDR EDAQ+KAKLENRTVYLHI  I ANDGWLT+T+GNDLTVEKNE ELPP VEKTASVK
Sbjct:  656 ITRGTVKSSPVERPKSVAAQIARAGVVRSKMEKAFPDRTEDAQVKAKLENRTVYLHITGIDANDGWLTVTVGNDLTVEKNEAELPPAVEKTASVK 750          
BLAST of mRNA_M-pyrifera_M_contig116228.3369.1 vs. uniprot
Match: A0A3C0AE15_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3C0AE15_9PLAN)

HSP 1 Score: 139 bits (349), Expect = 2.620e-38
Identity = 71/97 (73.20%), Postives = 84/97 (86.60%), Query Frame = 1
Query:    1 ITRGTIKSSPVERPKSVASQIARSGVVRNKMEKAFPDRVEDAQIKAKLENRTVYLHIKDIVANDGWLTLTIGNDLTVEKNETE--LPPPVEKTASVK 285
            ITRG +KSSPV RP+ +A+QIARSGVVR+KMEKAFPDRVED+Q+KAKLENRTVYL I  I A DGWLT+T+GNDLTVEKN+++  LPP   +TASVK
Sbjct:  218 ITRGDVKSSPVVRPERIAAQIARSGVVRSKMEKAFPDRVEDSQVKAKLENRTVYLDITGIKARDGWLTITVGNDLTVEKNDSKQPLPPEPAETASVK 314          
BLAST of mRNA_M-pyrifera_M_contig116228.3369.1 vs. uniprot
Match: A0A517W4Q0_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W4Q0_9PLAN)

HSP 1 Score: 141 bits (356), Expect = 3.740e-37
Identity = 70/94 (74.47%), Postives = 85/94 (90.43%), Query Frame = 1
Query:    1 ITRGTIKSSPVERPKSVASQIARSGVVRNKMEKAFPDRVEDAQIKAKLENRTVYLHIKDIVANDGWLTLTIGNDLTVEKNETELPPPVEKTASV 282
            ITRG +KSSPV RP  +ASQIAR+GVVR+KMEKAFP+RVE +Q+K KLENRTVYLHI DI+ANDGWLT+T+GNDLTVEK++ E+PP VE+TA+V
Sbjct:  657 ITRGNVKSSPVVRPDRIASQIARAGVVRSKMEKAFPNRVEPSQVKTKLENRTVYLHITDILANDGWLTVTVGNDLTVEKHD-EVPPAVEETAAV 749          
BLAST of mRNA_M-pyrifera_M_contig116228.3369.1 vs. uniprot
Match: A0A2E2C9K1_9PLAN (Uncharacterized protein n=11 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C9K1_9PLAN)

HSP 1 Score: 141 bits (355), Expect = 5.340e-37
Identity = 72/97 (74.23%), Postives = 85/97 (87.63%), Query Frame = 1
Query:    1 ITRGTIKSSPVERPKSVASQIARSGVVRNKMEKAFPDRVEDAQIKAKLENRTVYLHIKDIVANDGWLTLTIGNDLTVEKNETE--LPPPVEKTASVK 285
            ITRG +KSSPV RP+ +A+QIARSGVVR+KMEKAFPDRVED+Q+KAKLENRTVYL I  I ANDGWLT+T+GNDLTVEKN+++  LPP   +TASVK
Sbjct:  674 ITRGDVKSSPVVRPERIAAQIARSGVVRSKMEKAFPDRVEDSQVKAKLENRTVYLDITGIKANDGWLTITVGNDLTVEKNDSKQPLPPEPAETASVK 770          
BLAST of mRNA_M-pyrifera_M_contig116228.3369.1 vs. uniprot
Match: A0A518I4W4_9PLAN (Uncharacterized protein n=4 Tax=Gimesia TaxID=1649453 RepID=A0A518I4W4_9PLAN)

HSP 1 Score: 137 bits (344), Expect = 1.650e-35
Identity = 69/95 (72.63%), Postives = 82/95 (86.32%), Query Frame = 1
Query:    1 ITRGTIKSSPVERPKSVASQIARSGVVRNKMEKAFPDRVEDAQIKAKLENRTVYLHIKDIVANDGWLTLTIGNDLTVEKNETELPPPVEKTASVK 285
            ITRG +KSSPV RP+ +A+QIAR+GVVRNKMEKAFPDRVED+Q+KAKLENRTVYL+I  I   DGWLTLT+GNDLTVEKNE E+PP V+   +V+
Sbjct:  658 ITRGDVKSSPVVRPERIAAQIARAGVVRNKMEKAFPDRVEDSQVKAKLENRTVYLNITGIQTKDGWLTLTVGNDLTVEKNE-EVPPAVDAPPAVE 751          
BLAST of mRNA_M-pyrifera_M_contig116228.3369.1 vs. uniprot
Match: A0A517ZF86_9PLAN (Uncharacterized protein n=1 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517ZF86_9PLAN)

HSP 1 Score: 64.7 bits (156), Expect = 4.560e-10
Identity = 28/67 (41.79%), Postives = 47/67 (70.15%), Query Frame = 1
Query:    7 RGTIKSSPVERPKSVASQIARSGVVRNKMEKAFPDRVEDAQIKAKLENRTVYLHIKDIVANDGWLTL 207
            RG +   PVERP SVA Q+AR+ V+R+ +++A   R  D+ +  ++E + + L++++I ANDGWLT+
Sbjct:  667 RGNVGVRPVERPSSVAEQVARANVMRSNIQRALVSRTFDSTLDLEIEGKQLKLYVREIAANDGWLTI 733          
BLAST of mRNA_M-pyrifera_M_contig116228.3369.1 vs. uniprot
Match: A0A517QQG3_9PLAN (Uncharacterized protein n=2 Tax=Thalassoglobus polymorphus TaxID=2527994 RepID=A0A517QQG3_9PLAN)

HSP 1 Score: 57.4 bits (137), Expect = 1.700e-7
Identity = 27/71 (38.03%), Postives = 44/71 (61.97%), Query Frame = 1
Query:    1 ITRGTIKSSPVERPKSVASQIARSGVVRNKMEKAFPDRVEDAQIKAKLENRTVYLHIKDIVANDGWLTLTI 213
            + RG +   PV +P SVA Q+AR+ V+R K++KA P+R   +    + + + + L I  I AN+GWLT+ +
Sbjct:  653 LNRGNVGVKPVSKPSSVAEQVARANVMRQKIQKALPERELKSTFTFEQDGKKIELSITGIHANNGWLTIEL 723          
BLAST of mRNA_M-pyrifera_M_contig116228.3369.1 vs. uniprot
Match: A0A7W0M826_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7W0M826_9PLAN)

HSP 1 Score: 52.8 bits (125), Expect = 7.210e-6
Identity = 29/70 (41.43%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    1 ITRGTIKSSPVERPKSVASQIARSGVVRNKMEKAFPDRVEDAQIKAKLENRT-VYLHIKDIVANDGWLTL 207
            I RGTI  SPV+ P+S A+QIAR+GV+R K+E++      DA I  +   R+ + + ++ + A  GWLT+
Sbjct:  672 IERGTIIVSPVDPPRSRATQIARAGVMRRKLEQSIKGGTRDAVIDIERSGRSPMQMRVQRVDARGGWLTI 741          
BLAST of mRNA_M-pyrifera_M_contig116228.3369.1 vs. uniprot
Match: A0A4V0XMM9_9BACT (Uncharacterized protein n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A4V0XMM9_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 1.840e-5
Identity = 29/71 (40.85%), Postives = 41/71 (57.75%), Query Frame = 1
Query:    1 ITRGTIKSSPVERPKSVASQIARSGVVRNKMEKAFPDRVEDAQIKAKLENRT-VYLHIKDIVANDGWLTLT 210
            +  G I  SPVE P +   QIAR+GVVRNK++ A P R  D  +    + +T + L +  + A  GWLTL+
Sbjct:  667 VESGEISVSPVEAPANAGLQIARAGVVRNKVKNALPTRKFDRFVNIDKDRQTPIQLGLAQVKAAGGWLTLS 737          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116228.3369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6I6AEV1_9PLAN6.650e-5398.95Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
A0A517PZM8_9PLAN1.900e-4586.32Uncharacterized protein n=2 Tax=Gimesia panareensi... [more]
A0A3C0AE15_9PLAN2.620e-3873.20Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A517W4Q0_9PLAN3.740e-3774.47Uncharacterized protein n=2 Tax=Gimesia aquarii Ta... [more]
A0A2E2C9K1_9PLAN5.340e-3774.23Uncharacterized protein n=11 Tax=Planctomycetaceae... [more]
A0A518I4W4_9PLAN1.650e-3572.63Uncharacterized protein n=4 Tax=Gimesia TaxID=1649... [more]
A0A517ZF86_9PLAN4.560e-1041.79Uncharacterized protein n=1 Tax=Maioricimonas rari... [more]
A0A517QQG3_9PLAN1.700e-738.03Uncharacterized protein n=2 Tax=Thalassoglobus pol... [more]
A0A7W0M826_9PLAN7.210e-641.43Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A4V0XMM9_9BACT1.840e-540.85Uncharacterized protein n=2 Tax=Planctomycetes Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116228contigM-pyrifera_M_contig116228:274..561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score142.9
Seed ortholog evalue7.8e-32
Seed eggNOG ortholog344747.PM8797T_08839
Hectar predicted targeting categoryother localisation
EggNOG OGs28J0V@1,2IXY0@203682,2Z8XZ@2
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size288
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.2829478-CDS-M-pyrifera_M_contig116228:273..5611622815679.2829478-CDS-M-pyrifera_M_contig116228:273..561Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116228 274..561 -
1692277518.2704415-CDS-M-pyrifera_M_contig116228:273..5611692277518.2704415-CDS-M-pyrifera_M_contig116228:273..561Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116228 274..561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116228.3369.1prot_M-pyrifera_M_contig116228.3369.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116228 274..561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116228.3369.1

>prot_M-pyrifera_M_contig116228.3369.1 ID=prot_M-pyrifera_M_contig116228.3369.1|Name=mRNA_M-pyrifera_M_contig116228.3369.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
ITRGTIKSSPVERPKSVASQIARSGVVRNKMEKAFPDRVEDAQIKAKLEN
RTVYLHIKDIVANDGWLTLTIGNDLTVEKNETELPPPVEKTASVK*
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mRNA from alignment at M-pyrifera_M_contig116228:274..561-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116228.3369.1 ID=mRNA_M-pyrifera_M_contig116228.3369.1|Name=mRNA_M-pyrifera_M_contig116228.3369.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig116228:274..561- (Macrocystis pyrifera P11B4 male)
ATCACACGGGGAACCATCAAATCGTCTCCCGTTGAGCGGCCCAAGAGCGT TGCTTCTCAGATCGCCCGCTCTGGCGTGGTTCGCAACAAAATGGAAAAGG CATTTCCGGATCGTGTTGAAGACGCACAGATTAAGGCCAAACTGGAAAAC CGGACCGTTTATCTGCACATCAAAGATATTGTTGCCAACGATGGCTGGTT GACCCTGACCATCGGTAACGACCTGACCGTGGAGAAAAACGAGACAGAAC TGCCACCACCAGTTGAGAAAACCGCTTCGGTTAAATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116228:274..561-

>mRNA_M-pyrifera_M_contig116228.3369.1 ID=mRNA_M-pyrifera_M_contig116228.3369.1|Name=mRNA_M-pyrifera_M_contig116228.3369.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig116228:274..561- (Macrocystis pyrifera P11B4 male)
ATCACACGGGGAACCATCAAATCGTCTCCCGTTGAGCGGCCCAAGAGCGT
TGCTTCTCAGATCGCCCGCTCTGGCGTGGTTCGCAACAAAATGGAAAAGG
CATTTCCGGATCGTGTTGAAGACGCACAGATTAAGGCCAAACTGGAAAAC
CGGACCGTTTATCTGCACATCAAAGATATTGTTGCCAACGATGGCTGGTT
GACCCTGACCATCGGTAACGACCTGACCGTGGAGAAAAACGAGACAGAAC
TGCCACCACCAGTTGAGAAAACCGCTTCGGTTAAATAAATCACACGGGGA
ACCATCAAATCGTCTCCCGTTGAGCGGCCCAAGAGCGTTGCTTCTCAGAT
CGCCCGCTCTGGCGTGGTTCGCAACAAAATGGAAAAGGCATTTCCGGATC
GTGTTGAAGACGCACAGATTAAGGCCAAACTGGAAAACCGGACCGTTTAT
CTGCACATCAAAGATATTGTTGCCAACGATGGCTGGTTGACCCTGACCAT
CGGTAACGACCTGACCGTGGAGAAAAACGAGACAGAACTGCCACCACCAG
TTGAGAAAACCGCTTCGGTTAAATAA
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