mRNA_M-pyrifera_M_contig116196.3362.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116196.3362.1
Unique NamemRNA_M-pyrifera_M_contig116196.3362.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116196.3362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116196contigM-pyrifera_M_contig116196:115..408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.8
Seed ortholog evalue3.8e-07
Seed eggNOG ortholog3067.XP_002958737.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF410)
EggNOG OGs34MZM@3041,37QK0@33090,KOG3024@1,KOG3024@2759
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size294
Cds size282
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815678.9475453-UTR-M-pyrifera_M_contig116196:114..1261622815678.9475453-UTR-M-pyrifera_M_contig116196:114..126Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116196 115..126 +
1692277518.0990732-UTR-M-pyrifera_M_contig116196:114..1261692277518.0990732-UTR-M-pyrifera_M_contig116196:114..126Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116196 115..126 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815678.9638371-CDS-M-pyrifera_M_contig116196:126..4081622815678.9638371-CDS-M-pyrifera_M_contig116196:126..408Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116196 127..408 +
1692277518.110813-CDS-M-pyrifera_M_contig116196:126..4081692277518.110813-CDS-M-pyrifera_M_contig116196:126..408Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116196 127..408 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116196.3362.1prot_M-pyrifera_M_contig116196.3362.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116196 127..408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116196.3362.1

>prot_M-pyrifera_M_contig116196.3362.1 ID=prot_M-pyrifera_M_contig116196.3362.1|Name=mRNA_M-pyrifera_M_contig116196.3362.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
MEKVAKLAAEKVAAGQHYEAQQLYKAQQRRMVGRKKYKEAIWLLVNGCTT
MLQHKQHSCAVELGELLVGALEAAAIPVDEGLGAPILARTLLNA
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mRNA from alignment at M-pyrifera_M_contig116196:115..408+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116196.3362.1 ID=mRNA_M-pyrifera_M_contig116196.3362.1|Name=mRNA_M-pyrifera_M_contig116196.3362.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig116196:115..408+ (Macrocystis pyrifera P11B4 male)
CTCCCAGCAAAGATGGAGAAGGTCGCGAAGCTGGCGGCAGAGAAGGTGGC
TGCAGGGCAGCACTATGAGGCACAGCAGCTGTACAAGGCGCAGCAGCGGC
GCATGGTGGGCAGGAAGAAGTACAAAGAAGCGATCTGGCTCCTTGTGAAT
GGCTGCACCACCATGCTGCAGCACAAGCAGCACAGCTGCGCCGTGGAGCT
GGGCGAGCTCCTCGTGGGTGCGCTCGAGGCAGCGGCTATCCCCGTGGACG
AGGGCCTGGGTGCGCCCATACTTGCGCGGACTCTATTGAACGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116196:115..408+

>mRNA_M-pyrifera_M_contig116196.3362.1 ID=mRNA_M-pyrifera_M_contig116196.3362.1|Name=mRNA_M-pyrifera_M_contig116196.3362.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig116196:115..408+ (Macrocystis pyrifera P11B4 male)
ATGGAGAAGGTCGCGAAGCTGGCGGCAGAGAAGGTGGCTGCAGGGCAGCA
CTATGAGGCACAGCAGCTGTACAAGGCGCAGCAGCGGCGCATGGTGGGCA
GGAAGAAGTACAAAGAAGCGATCTGGCTCCTTGTGAATGGCTGCACCACC
ATGCTGCAGCACAAGCAGCACAGCTGCGCCGTGGAGCTGGGCGAGCTCCT
CGTGGGTGCGCTCGAGGCAGCGGCTATCCCCGTGGACGAGGGCCTGGGTG
CGCCCATACTTGCGCGGACTCTATTGAACGCTATGGAGAAGGTCGCGAAG
CTGGCGGCAGAGAAGGTGGCTGCAGGGCAGCACTATGAGGCACAGCAGCT
GTACAAGGCGCAGCAGCGGCGCATGGTGGGCAGGAAGAAGTACAAAGAAG
CGATCTGGCTCCTTGTGAATGGCTGCACCACCATGCTGCAGCACAAGCAG
CACAGCTGCGCCGTGGAGCTGGGCGAGCTCCTCGTGGGTGCGCTCGAGGC
AGCGGCTATCCCCGTGGACGAGGGCCTGGGTGCGCCCATACTTGCGCGGA
CTCTATTGAACGCT
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