mRNA_M-pyrifera_M_contig11601.3328.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11601.3328.1
Unique NamemRNA_M-pyrifera_M_contig11601.3328.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11601.3328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11601contigM-pyrifera_M_contig11601:4363..4945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size583
Cds size348
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815677.0975366-CDS-M-pyrifera_M_contig11601:4362..47101622815677.0975366-CDS-M-pyrifera_M_contig11601:4362..4710Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11601 4363..4710 +
1692277517.224802-CDS-M-pyrifera_M_contig11601:4362..47101692277517.224802-CDS-M-pyrifera_M_contig11601:4362..4710Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11601 4363..4710 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815677.1110144-UTR-M-pyrifera_M_contig11601:4710..49451622815677.1110144-UTR-M-pyrifera_M_contig11601:4710..4945Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11601 4711..4945 +
1692277517.2350874-UTR-M-pyrifera_M_contig11601:4710..49451692277517.2350874-UTR-M-pyrifera_M_contig11601:4710..4945Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11601 4711..4945 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11601.3328.1prot_M-pyrifera_M_contig11601.3328.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11601 4363..4710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11601.3328.1

>prot_M-pyrifera_M_contig11601.3328.1 ID=prot_M-pyrifera_M_contig11601.3328.1|Name=mRNA_M-pyrifera_M_contig11601.3328.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
MSAGKRKQRTSWVTWSIKLLRSTRWHQDAGLGRRSSNKRDSTRQTDGRTD
NGRPAISSTVSSSTYSFIGRFIGCFIGRFIGRFNDRYNGLLIDRFIISHF
IDGFIARFIGRYNRH*
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mRNA from alignment at M-pyrifera_M_contig11601:4363..4945+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11601.3328.1 ID=mRNA_M-pyrifera_M_contig11601.3328.1|Name=mRNA_M-pyrifera_M_contig11601.3328.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=583bp|location=Sequence derived from alignment at M-pyrifera_M_contig11601:4363..4945+ (Macrocystis pyrifera P11B4 male)
ATGTCAGCAGGAAAAAGAAAACAAAGAACTTCGTGGGTGACATGGTCAAT
CAAGTTGCTCCGATCGACGCGCTGGCACCAGGATGCGGGACTTGGACGTC
GGAGCAGCAACAAAAGAGACAGCACTAGGCAAACCGACGGACGGACGGAC
AACGGTCGGCCGGCCATTTCATCGACCGTTTCATCTTCGACCTATAGCTT
CATCGGTCGTTTCATTGGTTGTTTCATAGGTCGTTTCATTGGTCGCTTCA
ACGACCGTTATAATGGCCTACTCATTGACCGTTTCATCATCAGTCATTTC
ATCGACGGTTTCATAGCCCGTTTCATCGGTCGTTACAATCGCCACTGATT
CATTGGCCGCTTCACCCGCCGTTTCATCATATCCGTTCCATCGTCGGTCG
CTTCCTTGTCGTCCGTTTCATCACCGATTGTTCCATCATCAGTCATTTTC
ATTGGCCGTTTCATCATCGACCGTTTCATCACCATCTCATCGCCGGCCGT
TTCACTTCGCCAAGCTCTCCAAGTAACCCTCCAGCTCGTCCAAGTTGTCC
ATGTCAAACTGATCCTCCTTACCAGCCTCCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11601:4363..4945+

>mRNA_M-pyrifera_M_contig11601.3328.1 ID=mRNA_M-pyrifera_M_contig11601.3328.1|Name=mRNA_M-pyrifera_M_contig11601.3328.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig11601:4363..4945+ (Macrocystis pyrifera P11B4 male)
ATGTCAGCAGGAAAAAGAAAACAAAGAACTTCGTGGGTGACATGGTCAAT
CAAGTTGCTCCGATCGACGCGCTGGCACCAGGATGCGGGACTTGGACGTC
GGAGCAGCAACAAAAGAGACAGCACTAGGCAAACCGACGGACGGACGGAC
AACGGTCGGCCGGCCATTTCATCGACCGTTTCATCTTCGACCTATAGCTT
CATCGGTCGTTTCATTGGTTGTTTCATAGGTCGTTTCATTGGTCGCTTCA
ACGACCGTTATAATGGCCTACTCATTGACCGTTTCATCATCAGTCATTTC
ATCGACGGTTTCATAGCCCGTTTCATCGGTCGTTACAATCGCCACTGAAT
GTCAGCAGGAAAAAGAAAACAAAGAACTTCGTGGGTGACATGGTCAATCA
AGTTGCTCCGATCGACGCGCTGGCACCAGGATGCGGGACTTGGACGTCGG
AGCAGCAACAAAAGAGACAGCACTAGGCAAACCGACGGACGGACGGACAA
CGGTCGGCCGGCCATTTCATCGACCGTTTCATCTTCGACCTATAGCTTCA
TCGGTCGTTTCATTGGTTGTTTCATAGGTCGTTTCATTGGTCGCTTCAAC
GACCGTTATAATGGCCTACTCATTGACCGTTTCATCATCAGTCATTTCAT
CGACGGTTTCATAGCCCGTTTCATCGGTCGTTACAATCGCCACTGA
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