mRNA_M-pyrifera_M_contig11586.3291.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11586.3291.1
Unique NamemRNA_M-pyrifera_M_contig11586.3291.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11586.3291.1 vs. uniprot
Match: A0A6H5L2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J8_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.990e-17
Identity = 36/41 (87.80%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:    1 NPECVDCGAPEPDWASISLGVVMCIECSGIHRAMGVHVSKV 123
            NPECVDCGA EPDW+SI+LGV+MCIECSGIHR+MGVHVSKV
Sbjct:  704 NPECVDCGAREPDWSSINLGVMMCIECSGIHRSMGVHVSKV 744
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BLAST of mRNA_M-pyrifera_M_contig11586.3291.1 vs. uniprot
Match: D7FVG0_ECTSI (Centaurin, beta 5, isoform CRA_a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVG0_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 2.000e-17
Identity = 36/41 (87.80%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:    1 NPECVDCGAPEPDWASISLGVVMCIECSGIHRAMGVHVSKV 123
            NPECVDCGA EPDW+SI+LGV+MCIECSGIHR+MGVHVSKV
Sbjct:  444 NPECVDCGAREPDWSSINLGVMMCIECSGIHRSMGVHVSKV 484
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BLAST of mRNA_M-pyrifera_M_contig11586.3291.1 vs. uniprot
Match: A0A835ZCL2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCL2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 5.060e-17
Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 NPECVDCGAPEPDWASISLGVVMCIECSGIHRAMGVHVSKV 123
            NP+CVDCGA  PDWASISLGV+MCIECSGIHR+MGVH+SKV
Sbjct:  934 NPQCVDCGAATPDWASISLGVLMCIECSGIHRSMGVHISKV 974
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BLAST of mRNA_M-pyrifera_M_contig11586.3291.1 vs. uniprot
Match: A0A1E7FKS9_9STRA (Arf GTPase activating protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FKS9_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 5.760e-17
Identity = 29/41 (70.73%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 NPECVDCGAPEPDWASISLGVVMCIECSGIHRAMGVHVSKV 123
            N  CVDCGAP PDW S++LG++MCI+CSG+HR++GVHVSKV
Sbjct:    4 NSTCVDCGAPNPDWVSLNLGILMCIDCSGVHRSLGVHVSKV 44
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BLAST of mRNA_M-pyrifera_M_contig11586.3291.1 vs. uniprot
Match: A0A067JFB9_JATCU (Uncharacterized protein n=2 Tax=Jatropha curcas TaxID=180498 RepID=A0A067JFB9_JATCU)

HSP 1 Score: 79.3 bits (194), Expect = 3.300e-16
Identity = 33/41 (80.49%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 NPECVDCGAPEPDWASISLGVVMCIECSGIHRAMGVHVSKV 123
            N +CVDCGAPEPDWAS++LGV+MCIECSG+HR +GVHVSKV
Sbjct:  505 NDKCVDCGAPEPDWASLNLGVLMCIECSGVHRNLGVHVSKV 545
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BLAST of mRNA_M-pyrifera_M_contig11586.3291.1 vs. uniprot
Match: A0A7S1D2Y4_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D2Y4_CYCTE)

HSP 1 Score: 77.0 bits (188), Expect = 3.510e-16
Identity = 30/41 (73.17%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 NPECVDCGAPEPDWASISLGVVMCIECSGIHRAMGVHVSKV 123
            NP C DCGAP+PDWAS++LGV++CIECSG+HR++GVH+SKV
Sbjct:  121 NPYCADCGAPQPDWASLNLGVMVCIECSGVHRSLGVHLSKV 161
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BLAST of mRNA_M-pyrifera_M_contig11586.3291.1 vs. uniprot
Match: A0A7S1ZFW7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZFW7_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 8.400e-16
Identity = 32/41 (78.05%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 NPECVDCGAPEPDWASISLGVVMCIECSGIHRAMGVHVSKV 123
            NP C DCGAP PDWASI+LGV++CIECSG+HR++GVHVSKV
Sbjct:  707 NPICADCGAPSPDWASINLGVLLCIECSGVHRSLGVHVSKV 747
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BLAST of mRNA_M-pyrifera_M_contig11586.3291.1 vs. uniprot
Match: A0A6P5RFY6_PRUAV (ADP-ribosylation factor GTPase-activating protein AGD3-like n=1 Tax=Prunus avium TaxID=42229 RepID=A0A6P5RFY6_PRUAV)

HSP 1 Score: 75.9 bits (185), Expect = 1.220e-15
Identity = 30/41 (73.17%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 NPECVDCGAPEPDWASISLGVVMCIECSGIHRAMGVHVSKV 123
            N +C DCGAPEPDWAS++LGV++CIECSG+HR +GVH+SKV
Sbjct:  190 NDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKV 230
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BLAST of mRNA_M-pyrifera_M_contig11586.3291.1 vs. uniprot
Match: A0A444D6I4_ENSVE (Arf-GAP domain-containing protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444D6I4_ENSVE)

HSP 1 Score: 72.0 bits (175), Expect = 1.320e-15
Identity = 27/41 (65.85%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 NPECVDCGAPEPDWASISLGVVMCIECSGIHRAMGVHVSKV 123
            N  C +CGAP+PDWAS++LG+++CIECSG+HR +GVH+SKV
Sbjct:   39 NDACAECGAPDPDWASLNLGILVCIECSGVHRNLGVHISKV 79
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BLAST of mRNA_M-pyrifera_M_contig11586.3291.1 vs. uniprot
Match: UPI001E695FC8 (ADP-ribosylation factor GTPase-activating protein AGD3-like n=1 Tax=Trifolium pratense TaxID=57577 RepID=UPI001E695FC8)

HSP 1 Score: 75.9 bits (185), Expect = 1.530e-15
Identity = 30/41 (73.17%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 NPECVDCGAPEPDWASISLGVVMCIECSGIHRAMGVHVSKV 123
            N +C DCGAPEPDWAS++LGV++CIECSG+HR +GVH+SKV
Sbjct:   96 NDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKV 136
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11586.3291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2J8_9PHAE1.990e-1787.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVG0_ECTSI2.000e-1787.80Centaurin, beta 5, isoform CRA_a n=1 Tax=Ectocarpu... [more]
A0A835ZCL2_9STRA5.060e-1785.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1E7FKS9_9STRA5.760e-1770.73Arf GTPase activating protein (Fragment) n=1 Tax=F... [more]
A0A067JFB9_JATCU3.300e-1680.49Uncharacterized protein n=2 Tax=Jatropha curcas Ta... [more]
A0A7S1D2Y4_CYCTE3.510e-1673.17Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A7S1ZFW7_9STRA8.400e-1678.05Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A6P5RFY6_PRUAV1.220e-1573.17ADP-ribosylation factor GTPase-activating protein ... [more]
A0A444D6I4_ENSVE1.320e-1565.85Arf-GAP domain-containing protein n=1 Tax=Ensete v... [more]
UPI001E695FC81.530e-1573.17ADP-ribosylation factor GTPase-activating protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11586contigM-pyrifera_M_contig11586:3529..3651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue1.4e-14
Seed eggNOG ortholog2880.D7FVG0
Preferred nameAGD4
KEGG koko:K12489
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003002,GO:0003674,GO:0005096,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005798,GO:0005829,GO:0005886,GO:0006810,GO:0006897,GO:0006996,GO:0007010,GO:0007275,GO:0007389,GO:0008047,GO:0008150,GO:0008289,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009888,GO:0009965,GO:0009987,GO:0010016,GO:0010033,GO:0010051,GO:0010087,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0030133,GO:0030135,GO:0030136,GO:0030139,GO:0030140,GO:0030234,GO:0030695,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0035091,GO:0042221,GO:0043085,GO:0043087,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043547,GO:0044093,GO:0044424,GO:0044444,GO:0044464,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050790,GO:0050896,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0060589,GO:0065007,GO:0065009,GO:0071840,GO:0071944,GO:0097708,GO:0098657,GO:0098772,GO:0099402,GO:1905392
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5347@1,KOG0521@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Exons1
Model size123
Cds size123
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815675.1529336-CDS-M-pyrifera_M_contig11586:3528..36511622815675.1529336-CDS-M-pyrifera_M_contig11586:3528..3651Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11586 3529..3651 +
1692277516.2693806-CDS-M-pyrifera_M_contig11586:3528..36511692277516.2693806-CDS-M-pyrifera_M_contig11586:3528..3651Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11586 3529..3651 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11586.3291.1prot_M-pyrifera_M_contig11586.3291.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11586 3529..3651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11586.3291.1

>prot_M-pyrifera_M_contig11586.3291.1 ID=prot_M-pyrifera_M_contig11586.3291.1|Name=mRNA_M-pyrifera_M_contig11586.3291.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=41bp
NPECVDCGAPEPDWASISLGVVMCIECSGIHRAMGVHVSKV
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mRNA from alignment at M-pyrifera_M_contig11586:3529..3651+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11586.3291.1 ID=mRNA_M-pyrifera_M_contig11586.3291.1|Name=mRNA_M-pyrifera_M_contig11586.3291.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=123bp|location=Sequence derived from alignment at M-pyrifera_M_contig11586:3529..3651+ (Macrocystis pyrifera P11B4 male)
AACCCCGAATGCGTTGACTGCGGCGCACCCGAGCCCGACTGGGCGAGCAT
CAGCCTCGGCGTGGTCATGTGCATAGAGTGCTCTGGGATTCACCGGGCGA
TGGGGGTGCACGTGTCCAAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11586:3529..3651+

>mRNA_M-pyrifera_M_contig11586.3291.1 ID=mRNA_M-pyrifera_M_contig11586.3291.1|Name=mRNA_M-pyrifera_M_contig11586.3291.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig11586:3529..3651+ (Macrocystis pyrifera P11B4 male)
AACCCCGAATGCGTTGACTGCGGCGCACCCGAGCCCGACTGGGCGAGCAT
CAGCCTCGGCGTGGTCATGTGCATAGAGTGCTCTGGGATTCACCGGGCGA
TGGGGGTGCACGTGTCCAAGGTGAACCCCGAATGCGTTGACTGCGGCGCA
CCCGAGCCCGACTGGGCGAGCATCAGCCTCGGCGTGGTCATGTGCATAGA
GTGCTCTGGGATTCACCGGGCGATGGGGGTGCACGTGTCCAAGGTG
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