mRNA_M-pyrifera_M_contig115857.3290.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115857.3290.1
Unique NamemRNA_M-pyrifera_M_contig115857.3290.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115857.3290.1 vs. uniprot
Match: A0A2D6UCU1_9ACTN (Cell wall synthesis protein Wag31 n=3 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6UCU1_9ACTN)

HSP 1 Score: 80.9 bits (198), Expect = 7.900e-15
Identity = 58/129 (44.96%), Postives = 77/129 (59.69%), Query Frame = 1 
Query:    1 AEAEVVAAQAASHERDRLAAEVAELQEYRTFLADDVAILERHLTEERHQLAVSVSALTDLLELPEAFRVSRAPATSGVEVDPDLLAPMA--SPDESVSAVSVDAEAEV----------DTAETDPVAET 351
            AEAE    ++   E +R+AAEVAEL+ YR FLADD+AILER+L + R+ L  S +AL  +L+ PE FR+   PATSGV    +L  P+   + D SVSA     E+E+          D A +D VAET
Sbjct:  125 AEAEAAVEESVRTEXERVAAEVAELERYRAFLADDIAILERYLEQARNVLGASAAALQHVLDDPEQFRLPAMPATSGVVAPTELADPVVIEAVDSSVSAPEPAPESEITQAIEAVVIADEAASDGVAET 253
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BLAST of mRNA_M-pyrifera_M_contig115857.3290.1 vs. uniprot
Match: A0A2E8LAQ2_9ACTN (Cell wall synthesis protein Wag31 n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8LAQ2_9ACTN)

HSP 1 Score: 78.2 bits (191), Expect = 7.410e-14
Identity = 45/87 (51.72%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:    1 AEAEVVAAQAASHERDRLAAEVAELQEYRTFLADDVAILERHLTEERHQLAVSVSALTDLLELPEAFRVSRAPATSGVEVDPDLLAP 261
            AEAE    ++   ER+R+ AEVAEL+ YR FL DD+AILERHL + R  L  S +AL  LL+ PE FR+   PATSGV    D+  P
Sbjct:  125 AEAEAAIEESVRTERERVLAEVAELERYRAFLTDDIAILERHLEKSRDVLGASAAALQHLLDDPEQFRLPAMPATSGVLAPADVETP 211
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BLAST of mRNA_M-pyrifera_M_contig115857.3290.1 vs. uniprot
Match: A0A2D7S0Y8_9ACTN (Cell wall synthesis protein Wag31 n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D7S0Y8_9ACTN)

HSP 1 Score: 69.3 bits (168), Expect = 9.580e-11
Identity = 46/97 (47.42%), Postives = 55/97 (56.70%), Query Frame = 1 
Query:    1 AEAEVVAAQAASHERDRLAAEVAELQEYRTFLADDVAILERHLTEERHQLAVSVSALTDLLELPEAFRVSRAPATSGV------EVDPDLLAPMASP 273
            AEAE    ++   ER+ + AEVAELQ YR FL DD+AILERHL   R  L  S +AL   L+ PE FR     ATSGV      E   D +A +A P
Sbjct:  125 AEAEAAVEESVRTERELVLAEVAELQRYRAFLTDDIAILERHLEXXRXXLGASXAALQHXLDDPEQFRXPAMXATSGVVAPAXFETPKDTVAEIAEP 221
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115857.3290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2D6UCU1_9ACTN7.900e-1544.96Cell wall synthesis protein Wag31 n=3 Tax=Acidimic... [more]
A0A2E8LAQ2_9ACTN7.410e-1451.72Cell wall synthesis protein Wag31 n=1 Tax=Acidimic... [more]
A0A2D7S0Y8_9ACTN9.580e-1147.42Cell wall synthesis protein Wag31 n=1 Tax=Acidimic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115857contigM-pyrifera_M_contig115857:1..501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size501
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815675.1146476-CDS-M-pyrifera_M_contig115857:0..5011622815675.1146476-CDS-M-pyrifera_M_contig115857:0..501Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115857 1..501 +
1692277516.2530458-CDS-M-pyrifera_M_contig115857:0..5011692277516.2530458-CDS-M-pyrifera_M_contig115857:0..501Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115857 1..501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115857.3290.1prot_M-pyrifera_M_contig115857.3290.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115857 1..501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115857.3290.1

>prot_M-pyrifera_M_contig115857.3290.1 ID=prot_M-pyrifera_M_contig115857.3290.1|Name=mRNA_M-pyrifera_M_contig115857.3290.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp
AEAEVVAAQAASHERDRLAAEVAELQEYRTFLADDVAILERHLTEERHQL
AVSVSALTDLLELPEAFRVSRAPATSGVEVDPDLLAPMASPDESVSAVSV
DAEAEVDTAETDPVAETLVEEDPVVDEAEDVPVVEDDPVLEDNPVAEDVP
VVEDDPVLEDDPVDEDI
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mRNA from alignment at M-pyrifera_M_contig115857:1..501+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115857.3290.1 ID=mRNA_M-pyrifera_M_contig115857.3290.1|Name=mRNA_M-pyrifera_M_contig115857.3290.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig115857:1..501+ (Macrocystis pyrifera P11B4 male)
GCCGAAGCCGAGGTCGTGGCCGCCCAGGCGGCGTCGCACGAGCGTGACCG
GCTGGCCGCCGAGGTCGCCGAACTCCAGGAGTATCGGACCTTCCTCGCTG
ACGACGTGGCGATCCTCGAGCGCCACCTGACCGAGGAGCGCCACCAGCTG
GCGGTCTCGGTGTCCGCGCTCACCGATCTGCTCGAACTCCCCGAGGCGTT
CCGAGTCTCCCGGGCGCCAGCCACGAGTGGCGTCGAGGTCGATCCCGATC
TGTTGGCTCCGATGGCGTCCCCCGACGAGTCGGTCTCAGCCGTGTCGGTC
GATGCCGAGGCGGAAGTCGACACGGCCGAGACCGACCCGGTCGCGGAGAC
CCTGGTTGAAGAAGACCCCGTGGTCGACGAAGCCGAAGACGTCCCGGTGG
TCGAGGACGACCCTGTACTTGAAGACAACCCGGTTGCTGAAGACGTCCCG
GTGGTTGAGGACGACCCTGTACTTGAAGACGACCCGGTGGATGAAGACAT
C
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115857:1..501+

>mRNA_M-pyrifera_M_contig115857.3290.1 ID=mRNA_M-pyrifera_M_contig115857.3290.1|Name=mRNA_M-pyrifera_M_contig115857.3290.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig115857:1..501+ (Macrocystis pyrifera P11B4 male)
GCCGAAGCCGAGGTCGTGGCCGCCCAGGCGGCGTCGCACGAGCGTGACCG
GCTGGCCGCCGAGGTCGCCGAACTCCAGGAGTATCGGACCTTCCTCGCTG
ACGACGTGGCGATCCTCGAGCGCCACCTGACCGAGGAGCGCCACCAGCTG
GCGGTCTCGGTGTCCGCGCTCACCGATCTGCTCGAACTCCCCGAGGCGTT
CCGAGTCTCCCGGGCGCCAGCCACGAGTGGCGTCGAGGTCGATCCCGATC
TGTTGGCTCCGATGGCGTCCCCCGACGAGTCGGTCTCAGCCGTGTCGGTC
GATGCCGAGGCGGAAGTCGACACGGCCGAGACCGACCCGGTCGCGGAGAC
CCTGGTTGAAGAAGACCCCGTGGTCGACGAAGCCGAAGACGTCCCGGTGG
TCGAGGACGACCCTGTACTTGAAGACAACCCGGTTGCTGAAGACGTCCCG
GTGGTTGAGGACGACCCTGTACTTGAAGACGACCCGGTGGATGAAGACAT
CGCCGAAGCCGAGGTCGTGGCCGCCCAGGCGGCGTCGCACGAGCGTGACC
GGCTGGCCGCCGAGGTCGCCGAACTCCAGGAGTATCGGACCTTCCTCGCT
GACGACGTGGCGATCCTCGAGCGCCACCTGACCGAGGAGCGCCACCAGCT
GGCGGTCTCGGTGTCCGCGCTCACCGATCTGCTCGAACTCCCCGAGGCGT
TCCGAGTCTCCCGGGCGCCAGCCACGAGTGGCGTCGAGGTCGATCCCGAT
CTGTTGGCTCCGATGGCGTCCCCCGACGAGTCGGTCTCAGCCGTGTCGGT
CGATGCCGAGGCGGAAGTCGACACGGCCGAGACCGACCCGGTCGCGGAGA
CCCTGGTTGAAGAAGACCCCGTGGTCGACGAAGCCGAAGACGTCCCGGTG
GTCGAGGACGACCCTGTACTTGAAGACAACCCGGTTGCTGAAGACGTCCC
GGTGGTTGAGGACGACCCTGTACTTGAAGACGACCCGGTGGATGAAGACA
TC
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