mRNA_M-pyrifera_M_contig115815.3276.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115815.3276.1
Unique NamemRNA_M-pyrifera_M_contig115815.3276.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115815.3276.1 vs. uniprot
Match: A0A7S4I9C7_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I9C7_9EUKA)

HSP 1 Score: 162 bits (409), Expect = 1.910e-45
Identity = 71/119 (59.66%), Postives = 91/119 (76.47%), Query Frame = 1
Query:    4 AAFMLGYMVTAPFFGHMSRKVRPAVLMCVGLCTWCVAAIGTGLSVGYYSLLTVRTLIGVGEASFMGLAPTYIDDVSPVKWRSVWLGVFFSMIPIGAAVGYVIAGLFSATGYWEISFFFE 360
            A+FM+GYM+ AP FGH+SRK RPA LMC+GL  WC+A +GT +S  +++L+  R + G+GEASF+GLAPTYIDD++P K  S WL VFFSMIPIGAA GY +AG+FS    W  +F FE
Sbjct:   85 ASFMMGYMLFAPLFGHLSRKYRPAALMCIGLAIWCLATLGTAISFNFWTLIIARAVSGIGEASFIGLAPTYIDDIAPPKHHSTWLAVFFSMIPIGAATGYGVAGIFSQFSSWRWTFAFE 203          
BLAST of mRNA_M-pyrifera_M_contig115815.3276.1 vs. uniprot
Match: A0A6S7PQ55_LACSI (MFS domain-containing protein n=4 Tax=Lactuca TaxID=4235 RepID=A0A6S7PQ55_LACSI)

HSP 1 Score: 120 bits (301), Expect = 9.500e-30
Identity = 55/120 (45.83%), Postives = 79/120 (65.83%), Query Frame = 1
Query:    1 TAAFMLGYMVTAPFFGHMSRKVRPAVLMCVGLCTWCVAAIGTGLSVGYYSLLTVRTLIGVGEASFMGLAPTYIDDVSPVKWRSVWLGVFFSMIPIGAAVGYVIAGLFSATGYWEISFFFE 360
            ++AFM+G ++ +P F  M++ + P  L+ VGL  W  AAIG G+SVG++S+   R L+GVGEASF+ LA  +ID+ +P K RS WLG+F+  IP G A+GYV  GL   +  W  +F  E
Sbjct:   89 SSAFMVGLLIASPIFASMAKSMNPFRLVAVGLLIWTFAAIGCGISVGFWSITVCRMLVGVGEASFISLAAPFIDENAPPKQRSAWLGIFYMCIPTGIALGYVYGGLVGGSYGWRYAFLSE 208          
BLAST of mRNA_M-pyrifera_M_contig115815.3276.1 vs. uniprot
Match: A0A2U1Q8Y6_ARTAN (Major facilitator superfamily domain protein n=2 Tax=Anthemideae TaxID=102810 RepID=A0A2U1Q8Y6_ARTAN)

HSP 1 Score: 117 bits (294), Expect = 1.250e-28
Identity = 54/120 (45.00%), Postives = 77/120 (64.17%), Query Frame = 1
Query:    1 TAAFMLGYMVTAPFFGHMSRKVRPAVLMCVGLCTWCVAAIGTGLSVGYYSLLTVRTLIGVGEASFMGLAPTYIDDVSPVKWRSVWLGVFFSMIPIGAAVGYVIAGLFSATGYWEISFFFE 360
            ++AFM+G +V +P F  M++   P  L+ VGL  W  AAIG G+S+G++++   R L+GVGEASF+ LA  +ID+ +P   RS WLG+F+  IP G A+GYV  GL      W  +FF E
Sbjct:  102 SSAFMVGLLVASPIFASMAKSYNPFRLIAVGLSVWTFAAIGCGISIGFWTITVCRMLVGVGEASFISLAAPFIDENAPATQRSAWLGIFYMCIPTGVALGYVYGGLVGDGYGWRYAFFGE 221          
BLAST of mRNA_M-pyrifera_M_contig115815.3276.1 vs. uniprot
Match: A0A7S0CXP1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CXP1_9EUKA)

HSP 1 Score: 116 bits (291), Expect = 3.570e-28
Identity = 53/115 (46.09%), Postives = 80/115 (69.57%), Query Frame = 1
Query:    7 AFMLGYMVTAPFFGHMSRKVRPAVLMCVGLCTWCVAAIGTGLSVGYYSLLTVRTLIGVGEASFMGLAPTYIDDVSPVKWRSVWLGVFFSMIPIGAAVGYVIAGLFSATGYWEISF 351
            A+M+GYM+ +P F H + ++ P +LM VGL  WC++ IGTGLS+ Y ++L  RT  GVGEA+F  +AP  ID  +PV  +S+W+ VF+  IP+G A+GY++AG + ++G    SF
Sbjct:   62 AYMVGYMLASPAFAHFASRMSPLLLMGVGLTAWCISVIGTGLSLEYGTILLARTGTGVGEAAFACMAPPLIDAKAPVAQKSLWMSVFYIFIPVGYAMGYLVAGQWHSSGTVSGSF 176          
BLAST of mRNA_M-pyrifera_M_contig115815.3276.1 vs. uniprot
Match: A0A1R2B1B6_9CILI (MFS domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2B1B6_9CILI)

HSP 1 Score: 114 bits (285), Expect = 2.150e-27
Identity = 56/120 (46.67%), Postives = 77/120 (64.17%), Query Frame = 1
Query:    4 AAFMLGYMVTAPFFGHMSRKVRPAVLMCVGLCTWCVAAIGTGLSVGYYSLLTVRTLIGVGEASFMGLAPTYIDDVSPVKWRSVWLGVFFSMIPIGAAVGYVIAG-LFSATGYWEISFFFE 360
            ++F+LGYMVTAP F H S+K  P  LMC+GL  W VA + TG S  Y  LL  RTL G+GEASF+ LAP  I D++P   +++W+G+F+    +G A+G+V    +  A   W+  FFFE
Sbjct:   59 SSFILGYMVTAPMFAHYSQKYHPEYLMCIGLTIWSVAVLMTGFSESYIFLLISRTLTGIGEASFVCLAPPVIMDIAPQDKKNLWIGLFYVANVLGYALGFVFGNEIAHALDGWKYPFFFE 178          
BLAST of mRNA_M-pyrifera_M_contig115815.3276.1 vs. uniprot
Match: UPI001CB902A5 (probable sphingolipid transporter spinster homolog 2 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB902A5)

HSP 1 Score: 113 bits (283), Expect = 3.990e-27
Identity = 56/120 (46.67%), Postives = 78/120 (65.00%), Query Frame = 1
Query:    1 TAAFMLGYMVTAPFFGHMSRKVRPAVLMCVGLCTWCVAAIGTGLSVGYYSLLTVRTLIGVGEASFMGLAPTYIDDVSPVKWRSVWLGVFFSMIPIGAAVGYVIAGLFSATGYWEISFFFE 360
            ++AFM+G +V +P F  +++ + P  L+ VGL  W +AA G G SV ++SL   R LIGVGEASF+ LAP +ID+ +PV  R+  LG+FF    +G AVGYV  GL  A+  W  +FF E
Sbjct:   80 SSAFMVGLLVASPIFASLAKSIDPFRLIGVGLSVWTLAAAGCGFSVDFWSLTICRMLIGVGEASFLSLAPPFIDENAPVDQRAACLGIFFVSTSVGNAVGYVYGGLVGASLGWRCAFFGE 199          
BLAST of mRNA_M-pyrifera_M_contig115815.3276.1 vs. uniprot
Match: A0A2R6X265_MARPO (MFS domain-containing protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6X265_MARPO)

HSP 1 Score: 112 bits (279), Expect = 1.440e-26
Identity = 49/120 (40.83%), Postives = 78/120 (65.00%), Query Frame = 1
Query:    1 TAAFMLGYMVTAPFFGHMSRKVRPAVLMCVGLCTWCVAAIGTGLSVGYYSLLTVRTLIGVGEASFMGLAPTYIDDVSPVKWRSVWLGVFFSMIPIGAAVGYVIAGLFSATGYWEISFFFE 360
            ++AFM+G ++ +P F  +S+      L+ VGL  W +A +G GLS+G++S+L  R L+GV EASF+ LA  +IDD +P + R+ WL  F++ IP+G A+GYV  G+      W ++F+ E
Sbjct:   85 SSAFMVGLLIASPIFAELSKTYNHMRLIGVGLSIWTLATLGCGLSMGFWSILFFRALVGVAEASFVSLAAPFIDDYAPPEKRTAWLSFFYACIPVGVALGYVYGGVVGGLWGWRVAFWLE 204          
BLAST of mRNA_M-pyrifera_M_contig115815.3276.1 vs. uniprot
Match: A0A6A7G8F1_9CRUS (Major facilitator superfamily protein (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G8F1_9CRUS)

HSP 1 Score: 111 bits (277), Expect = 2.930e-26
Identity = 51/124 (41.13%), Postives = 77/124 (62.10%), Query Frame = 1
Query:    7 AFMLGYMVTAPFFGHMSRKVRPAVLMCVGLCTWCVAAIGTGLSVGYYSLLTVRTLIGVGEASFMGLAPTYIDDVSPVKWRSVWLGVFFSMIPIGAAVGYVIAGL------FSATGYWEISFFFE 360
            A+++G+ ++ PFF H S +  P  +MC+GL  W  A+  +GL++ +Y+L   R L GVGEASF+ LAP +ID  +P + RS+WL +F+  IP+G A GYV+AG       F A+  W   F  +
Sbjct:   88 AYLVGFALSGPFFAHFSHRFPPVRMMCLGLSVWSFASACSGLALEFYTLTLARALTGVGEASFLCLAPPFIDAFAPKERRSIWLAIFYCSIPVGVASGYVLAGQWLNSEPFGASWSWRAFFILQ 211          
BLAST of mRNA_M-pyrifera_M_contig115815.3276.1 vs. uniprot
Match: A0A2J6JMY9_LACSA (MFS domain-containing protein n=3 Tax=Lactuca sativa TaxID=4236 RepID=A0A2J6JMY9_LACSA)

HSP 1 Score: 110 bits (274), Expect = 5.650e-26
Identity = 51/120 (42.50%), Postives = 77/120 (64.17%), Query Frame = 1
Query:    1 TAAFMLGYMVTAPFFGHMSRKVRPAVLMCVGLCTWCVAAIGTGLSVGYYSLLTVRTLIGVGEASFMGLAPTYIDDVSPVKWRSVWLGVFFSMIPIGAAVGYVIAGLFSATGYWEISFFFE 360
            ++AF++G ++ +P F  +++ + P  L+ VGL  W +A +G G SV ++S+   R L+GVGEASF+GLA  +ID+ +PV  R+ WLG+F   +PIG AVG V  GL      W  +FF E
Sbjct:   78 SSAFLVGLLIASPIFASLAQSINPFRLIGVGLSVWTLAVVGCGFSVDFWSITICRMLVGVGEASFIGLAAPFIDENAPVAQRTAWLGIFCMCLPIGIAVGDVYGGLVGDGLGWRYAFFGE 197          
BLAST of mRNA_M-pyrifera_M_contig115815.3276.1 vs. uniprot
Match: I0YKK9_COCSC (MFS general substrate transporter n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YKK9_COCSC)

HSP 1 Score: 108 bits (270), Expect = 2.040e-25
Identity = 50/119 (42.02%), Postives = 75/119 (63.03%), Query Frame = 1
Query:    4 AAFMLGYMVTAPFFGHMSRKVRPAVLMCVGLCTWCVAAIGTGLSVGYYSLLTVRTLIGVGEASFMGLAPTYIDDVSPVKWRSVWLGVFFSMIPIGAAVGYVIAGLFSATGYWEISFFFE 360
            AAF++G +V++P F   S+ V    L+ +GL  W ++  G GLS+G++SLLT R  +GVGEASF+ LA  +IDD +P   ++ WL  F+  IP+G A+GY+  GL +    W  +F  E
Sbjct:   47 AAFLVGLLVSSPIFAEASKHVNAFRLIALGLGVWTLSTAGCGLSIGFWSLLTCRMFVGVGEASFVALASPFIDDNAPPHAKTRWLATFYLCIPVGYALGYIFGGLVAGPLGWRAAFLLE 165          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115815.3276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4I9C7_9EUKA1.910e-4559.66Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A6S7PQ55_LACSI9.500e-3045.83MFS domain-containing protein n=4 Tax=Lactuca TaxI... [more]
A0A2U1Q8Y6_ARTAN1.250e-2845.00Major facilitator superfamily domain protein n=2 T... [more]
A0A7S0CXP1_9EUKA3.570e-2846.09Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A1R2B1B6_9CILI2.150e-2746.67MFS domain-containing protein n=1 Tax=Stentor coer... [more]
UPI001CB902A53.990e-2746.67probable sphingolipid transporter spinster homolog... [more]
A0A2R6X265_MARPO1.440e-2640.83MFS domain-containing protein n=1 Tax=Marchantia p... [more]
A0A6A7G8F1_9CRUS2.930e-2641.13Major facilitator superfamily protein (Fragment) n... [more]
A0A2J6JMY9_LACSA5.650e-2642.50MFS domain-containing protein n=3 Tax=Lactuca sati... [more]
I0YKK9_COCSC2.040e-2542.02MFS general substrate transporter n=1 Tax=Coccomyx... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115815contigM-pyrifera_M_contig115815:5..364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score112.8
Seed ortholog evalue1e-22
Seed eggNOG ortholog3218.PP1S61_45V6.1
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944
EggNOG free text desc.sphingolipid transporter spinster homolog
EggNOG OGs37M7R@33090,3GCYR@35493,COG0477@1,KOG1330@2759
COG Functional cat.G
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size360
Cds size348
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815674.5479243-CDS-M-pyrifera_M_contig115815:4..3521622815674.5479243-CDS-M-pyrifera_M_contig115815:4..352Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115815 5..352 -
1692277516.050406-CDS-M-pyrifera_M_contig115815:4..3521692277516.050406-CDS-M-pyrifera_M_contig115815:4..352Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115815 5..352 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815674.5614345-UTR-M-pyrifera_M_contig115815:352..3641622815674.5614345-UTR-M-pyrifera_M_contig115815:352..364Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115815 353..364 -
1692277516.0666783-UTR-M-pyrifera_M_contig115815:352..3641692277516.0666783-UTR-M-pyrifera_M_contig115815:352..364Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115815 353..364 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115815.3276.1prot_M-pyrifera_M_contig115815.3276.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115815 5..352 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115815.3276.1

>prot_M-pyrifera_M_contig115815.3276.1 ID=prot_M-pyrifera_M_contig115815.3276.1|Name=mRNA_M-pyrifera_M_contig115815.3276.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
MLGYMVTAPFFGHMSRKVRPAVLMCVGLCTWCVAAIGTGLSVGYYSLLTV
RTLIGVGEASFMGLAPTYIDDVSPVKWRSVWLGVFFSMIPIGAAVGYVIA
GLFSATGYWEISFFFE
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mRNA from alignment at M-pyrifera_M_contig115815:5..364-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115815.3276.1 ID=mRNA_M-pyrifera_M_contig115815.3276.1|Name=mRNA_M-pyrifera_M_contig115815.3276.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig115815:5..364- (Macrocystis pyrifera P11B4 male)
ACAGCTGCCTTCATGCTGGGCTACATGGTGACGGCGCCGTTCTTCGGCCA CATGTCGCGTAAGGTGCGGCCCGCGGTCCTCATGTGCGTGGGCCTCTGCA CGTGGTGCGTGGCAGCAATCGGCACGGGCCTGAGCGTGGGCTACTACAGC CTCCTCACGGTGCGCACCCTCATCGGCGTGGGAGAGGCCAGCTTCATGGG CCTGGCGCCCACTTACATCGACGACGTGTCGCCCGTCAAGTGGCGGTCGG TGTGGCTCGGCGTTTTCTTCAGCATGATCCCCATTGGCGCCGCTGTGGGC TATGTCATTGCTGGCCTCTTCTCTGCCACCGGGTACTGGGAAATATCCTT CTTCTTCGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115815:5..364-

>mRNA_M-pyrifera_M_contig115815.3276.1 ID=mRNA_M-pyrifera_M_contig115815.3276.1|Name=mRNA_M-pyrifera_M_contig115815.3276.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig115815:5..364- (Macrocystis pyrifera P11B4 male)
ATGCTGGGCTACATGGTGACGGCGCCGTTCTTCGGCCACATGTCGCGTAA
GGTGCGGCCCGCGGTCCTCATGTGCGTGGGCCTCTGCACGTGGTGCGTGG
CAGCAATCGGCACGGGCCTGAGCGTGGGCTACTACAGCCTCCTCACGGTG
CGCACCCTCATCGGCGTGGGAGAGGCCAGCTTCATGGGCCTGGCGCCCAC
TTACATCGACGACGTGTCGCCCGTCAAGTGGCGGTCGGTGTGGCTCGGCG
TTTTCTTCAGCATGATCCCCATTGGCGCCGCTGTGGGCTATGTCATTGCT
GGCCTCTTCTCTGCCACCGGGTACTGGGAAATATCCTTCTTCTTCGAGAT
GCTGGGCTACATGGTGACGGCGCCGTTCTTCGGCCACATGTCGCGTAAGG
TGCGGCCCGCGGTCCTCATGTGCGTGGGCCTCTGCACGTGGTGCGTGGCA
GCAATCGGCACGGGCCTGAGCGTGGGCTACTACAGCCTCCTCACGGTGCG
CACCCTCATCGGCGTGGGAGAGGCCAGCTTCATGGGCCTGGCGCCCACTT
ACATCGACGACGTGTCGCCCGTCAAGTGGCGGTCGGTGTGGCTCGGCGTT
TTCTTCAGCATGATCCCCATTGGCGCCGCTGTGGGCTATGTCATTGCTGG
CCTCTTCTCTGCCACCGGGTACTGGGAAATATCCTTCTTCTTCGAG
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