mRNA_M-pyrifera_M_contig11575.3264.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11575.3264.1
Unique NamemRNA_M-pyrifera_M_contig11575.3264.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11575.3264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11575contigM-pyrifera_M_contig11575:8083..8759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size677
Cds size531
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11575.3264.1prot_M-pyrifera_M_contig11575.3264.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11575 8227..8757 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815673.692286-UTR-M-pyrifera_M_contig11575:8082..82261622815673.692286-UTR-M-pyrifera_M_contig11575:8082..8226Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11575 8083..8226 +
1692277515.5778823-UTR-M-pyrifera_M_contig11575:8082..82261692277515.5778823-UTR-M-pyrifera_M_contig11575:8082..8226Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11575 8083..8226 +
1622815673.715542-UTR-M-pyrifera_M_contig11575:8757..87591622815673.715542-UTR-M-pyrifera_M_contig11575:8757..8759Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11575 8758..8759 +
1692277515.6046016-UTR-M-pyrifera_M_contig11575:8757..87591692277515.6046016-UTR-M-pyrifera_M_contig11575:8757..8759Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11575 8758..8759 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815673.7023647-CDS-M-pyrifera_M_contig11575:8226..87571622815673.7023647-CDS-M-pyrifera_M_contig11575:8226..8757Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11575 8227..8757 +
1692277515.5958052-CDS-M-pyrifera_M_contig11575:8226..87571692277515.5958052-CDS-M-pyrifera_M_contig11575:8226..8757Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11575 8227..8757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11575.3264.1

>prot_M-pyrifera_M_contig11575.3264.1 ID=prot_M-pyrifera_M_contig11575.3264.1|Name=mRNA_M-pyrifera_M_contig11575.3264.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=177bp
MWSDLDGLDSDDSDNRDGSISAALQASGQSQDNKQGTGGSKEAALAKHSD
HSQDGNVREVDVGGNNTTAPPGVKGMREGGAGDLSLGNTEIPLGGNLAQV
SQANAAPDRHMTASSGQADVSIGDAMSQNLGGTPVAALSGTSAVVARGGV
FSLFGGEGGFENDDLLDAALDDSDQE*
back to top

mRNA from alignment at M-pyrifera_M_contig11575:8083..8759+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11575.3264.1 ID=mRNA_M-pyrifera_M_contig11575.3264.1|Name=mRNA_M-pyrifera_M_contig11575.3264.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=677bp|location=Sequence derived from alignment at M-pyrifera_M_contig11575:8083..8759+ (Macrocystis pyrifera P11B4 male)
GCTGGCTGCTCCACTTCTGCACGTACGGTTCCTGGCGAGGAAAAAGGTGT
CTCAAAGAACGAGCCGGCGGGGCTGGGGGTAGAACTCATCGATTCGGTTG
ACGGCGGACAAGGCGTTGCTGGTCAGACGCGTGTCTCAAGCTCCATGTGG
TCCGACCTTGATGGACTCGATAGTGATGATAGTGATAACCGTGACGGCTC
GATCAGTGCTGCCCTTCAGGCGAGTGGTCAGTCGCAAGACAATAAACAAG
GAACAGGCGGGAGTAAGGAGGCCGCGCTGGCGAAGCATTCGGACCACTCG
CAGGACGGCAATGTCCGTGAGGTCGATGTGGGCGGGAATAATACCACGGC
GCCTCCTGGGGTTAAAGGGATGAGGGAGGGGGGTGCTGGCGATCTCAGCC
TTGGAAATACCGAGATACCACTTGGAGGCAACCTTGCACAAGTGTCTCAG
GCAAACGCTGCGCCCGACCGACACATGACGGCATCATCAGGGCAAGCAGA
TGTGTCTATCGGCGATGCAATGTCACAAAACCTGGGTGGTACGCCGGTAG
CAGCACTGTCCGGAACATCGGCGGTGGTGGCAAGAGGGGGCGTGTTTTCG
TTGTTCGGGGGCGAGGGCGGCTTTGAAAACGACGACCTGCTCGACGCGGC
GTTGGACGACAGCGACCAAGAATGAAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig11575:8083..8759+

>mRNA_M-pyrifera_M_contig11575.3264.1 ID=mRNA_M-pyrifera_M_contig11575.3264.1|Name=mRNA_M-pyrifera_M_contig11575.3264.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1062bp|location=Sequence derived from alignment at M-pyrifera_M_contig11575:8083..8759+ (Macrocystis pyrifera P11B4 male)
ATGTGGTCCGACCTTGATGGACTCGATAGTGATGATAGTGATAACCGTGA
CGGCTCGATCAGTGCTGCCCTTCAGGCGAGTGGTCAGTCGCAAGACAATA
AACAAGGAACAGGCGGGAGTAAGGAGGCCGCGCTGGCGAAGCATTCGGAC
CACTCGCAGGACGGCAATGTCCGTGAGGTCGATGTGGGCGGGAATAATAC
CACGGCGCCTCCTGGGGTTAAAGGGATGAGGGAGGGGGGTGCTGGCGATC
TCAGCCTTGGAAATACCGAGATACCACTTGGAGGCAACCTTGCACAAGTG
TCTCAGGCAAACGCTGCGCCCGACCGACACATGACGGCATCATCAGGGCA
AGCAGATGTGTCTATCGGCGATGCAATGTCACAAAACCTGGGTGGTACGC
CGGTAGCAGCACTGTCCGGAACATCGGCGGTGGTGGCAAGAGGGGGCGTG
TTTTCGTTGTTCGGGGGCGAGGGCGGCTTTGAAAACGACGACCTGCTCGA
CGCGGCGTTGGACGACAGCGACCAAGAATGAATGTGGTCCGACCTTGATG
GACTCGATAGTGATGATAGTGATAACCGTGACGGCTCGATCAGTGCTGCC
CTTCAGGCGAGTGGTCAGTCGCAAGACAATAAACAAGGAACAGGCGGGAG
TAAGGAGGCCGCGCTGGCGAAGCATTCGGACCACTCGCAGGACGGCAATG
TCCGTGAGGTCGATGTGGGCGGGAATAATACCACGGCGCCTCCTGGGGTT
AAAGGGATGAGGGAGGGGGGTGCTGGCGATCTCAGCCTTGGAAATACCGA
GATACCACTTGGAGGCAACCTTGCACAAGTGTCTCAGGCAAACGCTGCGC
CCGACCGACACATGACGGCATCATCAGGGCAAGCAGATGTGTCTATCGGC
GATGCAATGTCACAAAACCTGGGTGGTACGCCGGTAGCAGCACTGTCCGG
AACATCGGCGGTGGTGGCAAGAGGGGGCGTGTTTTCGTTGTTCGGGGGCG
AGGGCGGCTTTGAAAACGACGACCTGCTCGACGCGGCGTTGGACGACAGC
GACCAAGAATGA
back to top