mRNA_M-pyrifera_M_contig115471.3207.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115471.3207.1
Unique NamemRNA_M-pyrifera_M_contig115471.3207.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115471.3207.1 vs. uniprot
Match: A0A7S1GBG5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GBG5_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.760e-26
Identity = 65/155 (41.94%), Postives = 97/155 (62.58%), Query Frame = 1
Query:    1 MPLSGEYTWSETETKVTVRIPLKGVSRREVDVQGALAVVGVSFPPYLVQLDLPHEVDDLTSAARIRTGELSLELEKVVPQVWGDIVVSGLDKKQLRERRAAAVSAARERDGALRKGAQTKRAEAGRAAVRAQMALDSKKRQHLDDLKAEEKEAAE 465
            MPLS  +TW+ET   V + +PLK  +R  VD+  +   V V+F PYL+ +DL   VDD+ + AR     L L+L K+ P +W ++  +   KK+L  RRAA++ A  ERD  LRK    +  +  R+A+R+QMA++  +R+ L+D+KAEEK AAE
Sbjct:    1 MPLSAVFTWTETRDVVNIVVPLKTATRASVDIYVSDVFVKVNFAPYLLVVDLLRPVDDVNTVARFEDRTLHLQLTKLEPGIWKELQHTA-SKKELVARRAASMEAKSERDAKLRKRRSDRAYDDERSALRSQMAMEEGERRELEDVKAEEKAAAE 154          
BLAST of mRNA_M-pyrifera_M_contig115471.3207.1 vs. uniprot
Match: A0A5A8EGC8_CAFRO (CS domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EGC8_CAFRO)

HSP 1 Score: 107 bits (268), Expect = 2.890e-24
Identity = 67/158 (42.41%), Postives = 91/158 (57.59%), Query Frame = 1
Query:    1 MPLSGEYTWSETETKVTVRIPLKGVSRREVDVQGALAVVGVSFPPYLVQLDLPHEVDDLTSAARIRTGELSLELEKVVPQVWGDIVVSGLDKKQLRERRAAAVSAARERDGALRKGAQTKRAEAGRAAVRAQMALDSKKRQHLDDLKAEEKEAAEVCV 474
            MP++ E TW +  T V V IPLKG+SR+ VD+  +   V V+FPPYL+ LDL   + D  + A  R G L L L K     W  +   GLDK  LR+RR A++   R  D AL K  + ++ EA   A R QMAL++ +R+ L+  KAE K+ AE  V
Sbjct:    1 MPITPELTWEQDATAVRVFIPLKGISRKTVDLYASETFVKVNFPPYLLMLDLHAPIADHDARASYRDGMLVLSLPKQHEGAWPALQAEGLDKAALRDRREASMEKRRNEDEALGKARRQRQQEASDLAFRRQMALENAEREQLEARKAEAKDEAEARV 158          
BLAST of mRNA_M-pyrifera_M_contig115471.3207.1 vs. uniprot
Match: A0A067BU44_SAPPC (CS domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BU44_SAPPC)

HSP 1 Score: 97.8 bits (242), Expect = 1.360e-21
Identity = 56/158 (35.44%), Postives = 94/158 (59.49%), Query Frame = 1
Query:    1 MPLSGEYTWSETETKVTVRIPLKGVSRREVDVQGALAVVGVSFPPYLVQLDLPHEVDDLTSAARIRTGELSLELEKVVPQVWGDIVVSGLDKKQLRERRAAAVSAARERDGALRKGAQTKRAEAGRAAVRAQMALDSKKRQHLDDLKAEEKEAAEVCV 474
            MPL+ +Y W++T T +++ +PLKG SR++VD   A AVV ++F PY++ LDL   ++  ++  +I  G + L + K  P +W ++V SG  K  +  RR A++    E +  L +  +  +    +  +R QMAL+  +RQ LDDLKA+EK+  E  +
Sbjct:    1 MPLTPQYEWTQTATHLSLTVPLKGASRKDVDFYVADAVVKINFKPYVLLLDLVAHIEPTSAVVKILDGVIHLTVAKSTPDMWKELVFSG-SKADILARRQASMDRKTEMEQQLAEKRKDAKYATEKKTLRDQMALEEHERQRLDDLKADEKQREETAM 157          
BLAST of mRNA_M-pyrifera_M_contig115471.3207.1 vs. uniprot
Match: T0QDP2_SAPDV (CS domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QDP2_SAPDV)

HSP 1 Score: 93.2 bits (230), Expect = 3.980e-19
Identity = 53/158 (33.54%), Postives = 94/158 (59.49%), Query Frame = 1
Query:    1 MPLSGEYTWSETETKVTVRIPLKGVSRREVDVQGALAVVGVSFPPYLVQLDLPHEVDDLTSAARIRTGELSLELEKVVPQVWGDIVVSGLDKKQLRERRAAAVSAARERDGALRKGAQTKRAEAGRAAVRAQMALDSKKRQHLDDLKAEEKEAAEVCV 474
            MPL+ +Y W++T T V++ +PLKG SR++VD   A AV+ ++F PY++ LD+   ++  ++  +I  G + + + K  P++W ++V  G  K  +  RR A++    E +  L +  +  +    +  +R QMAL+  +RQ LDDLKA+EK+  E  +
Sbjct:    1 MPLTPQYEWAQTATHVSLTVPLKGASRKDVDFYVADAVLKINFKPYVLLLDVVAPIEPTSAVVKILDGVIHMTVAKSTPEMWKELVFVG-SKADILARRKASMDRKTEMEQQLAEKRKDAKYATEKKTLRDQMALEEHERQRLDDLKADEKQREESAM 157          
BLAST of mRNA_M-pyrifera_M_contig115471.3207.1 vs. uniprot
Match: A0A8J4BGF1_9CHLO (Dynein axonemal assembly factor 4 n=3 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BGF1_9CHLO)

HSP 1 Score: 91.7 bits (226), Expect = 1.490e-18
Identity = 59/150 (39.33%), Postives = 87/150 (58.00%), Query Frame = 1
Query:    1 MPLSGEYTWSETETKVTVRIPLKGVSRREVDVQGALAVVGVSFPPYLVQLDLPHEVDDLTSAARIRTGELSLELEKVVPQVWGDIVVSGLDKKQLRERRAAAVSAARERDGALRKGAQTKRAEAGRAAVRAQMALDSKKRQHLDDLKAEE 450
            MPL+ +YTWSETE  + V + + GVSR + DV    A + V++PPYL  LDL  EVD+  S+A I  G++  +L K  P +WG +  SG DK +L  RR A++  A       RK    ++ +  + A +  M +D +KRQ ++  KAEE
Sbjct:    1 MPLTPQYTWSETEATLEVTVDVPGVSRAKADVFATDAFLKVNYPPYLFALDLFKEVDNSRSSATIIPGKVVFKLFKRDPSLWGCLAASG-DKTELTRRRNASIDRAYLVLEEARKARLARKQQEDKNATQRSMDVDRRKRQEMERRKAEE 149          
BLAST of mRNA_M-pyrifera_M_contig115471.3207.1 vs. uniprot
Match: A0A1V9ZE91_9STRA (CS domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZE91_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 3.440e-18
Identity = 54/158 (34.18%), Postives = 87/158 (55.06%), Query Frame = 1
Query:    1 MPLSGEYTWSETETKVTVRIPLKGVSRREVDVQGALAVVGVSFPPYLVQLDLPHEVDDLTSAARIRTGELSLELEKVVPQVWGDIVVSGLDKKQLRERRAAAVSAARERDGALRKGAQTKRAEAGRAAVRAQMALDSKKRQHLDDLKAEEKEAAEVCV 474
            MPL+ +Y WS+ E  +++R+PLKG SR+EVD   A  V+ ++F PY++ LDL   +D  ++  ++  G + L ++K  P  W ++   G     L  R+A+             K  + K A   +  +R QMAL+  +RQ LDDLKA+EK+  E  +
Sbjct:    1 MPLTPQYEWSQDEASISLRVPLKGTSRKEVDFYVADLVIKINFKPYVLILDLTATIDPASTMIKLIDGAIDLTVKKESPGAWKELTFHGAKSDVLARRKASMDRKTEMEQQWFEKRKELKYA-TEKKTLRDQMALEEHERQRLDDLKADEKQREEEAM 157          
BLAST of mRNA_M-pyrifera_M_contig115471.3207.1 vs. uniprot
Match: A0A6A5ALR5_9STRA (CS domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ALR5_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.080e-17
Identity = 56/158 (35.44%), Postives = 86/158 (54.43%), Query Frame = 1
Query:    1 MPLSGEYTWSETETKVTVRIPLKGVSRREVDVQGALAVVGVSFPPYLVQLDLPHEVDDLTSAARIRTGELSLELEKVVPQVWGDIVVSGLDKKQLRERRA--AAVSAARERDGALRKGAQTKRAEAGRAAVRAQMALDSKKRQHLDDLKAEEKEAAEV 468
            MPL+ ++TW E  + + +R+PLKG SR++VD+  A  VV V+F PY++ +DL   V+   +   I  G + L  +K   +VW  +   G     L  R+A  A   A  ++    RK  + +     +  +R QM+LD  +RQ LDDLKA EK+  EV
Sbjct:    1 MPLTPQFTWEEDVSSIALRVPLKGASRKDVDIYVADLVVKVNFKPYVLLVDLHAAVEPENTTVTITNGVVVLVAQKHERRVWKQLGFDGTKADCLARRKASMARKEAYEQKQSEARKDLKYRNE---KQTLRDQMSLDELERQRLDDLKATEKQREEV 155          
BLAST of mRNA_M-pyrifera_M_contig115471.3207.1 vs. uniprot
Match: D7FQJ5_ECTSI (CS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQJ5_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 4.480e-15
Identity = 53/162 (32.72%), Postives = 87/162 (53.70%), Query Frame = 1
Query:    1 MPLSGEYTWSETETKVTVRIPLKGVSRREVDVQGALAVVGVSFPPYLVQLDLPHEVDDLTSAARIRTGELSLELEKVV--PQVWGDIV--VSGLDKKQLRERRAAAVSAARERDGALRKGAQTKRAEAGRAAVRAQMALDSKKRQHLDDLKAEEKEAAEVCV 474
            MPL+ EYTW+E+ET + V++PLKG S  ++DV      + VSFPPYL+++DL   +D +   AR+  G L ++ +K     ++WG +   VS     +++ RR  ++                           +QM+++  +R+ +DD+KAEEKE AE  V
Sbjct:    1 MPLTAEYTWAESETIIQVQVPLKGQSASKLDVFATECYLKVSFPPYLLEVDLDGYIDSMQPKARVENGTLMIKAKKKEGSARLWGSLGQRVSRKCDPKVKARREESIKEKHXXXXXXXXXXXXXXXXXXXXXXXSQMSVEEDERRRIDDIKAEEKEKAEAEV 162          
BLAST of mRNA_M-pyrifera_M_contig115471.3207.1 vs. uniprot
Match: W4FNL6_9STRA (CS domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FNL6_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 8.010e-15
Identity = 53/155 (34.19%), Postives = 85/155 (54.84%), Query Frame = 1
Query:    1 MPLSGEYTWSETETKVTVRIPLKGVSRREVDVQGALAVVGVSFPPYLVQLDLPHEVDDLTSAARIRTGELSLELEKVVPQVWGDIVVSGLDKKQLRERRAAAVSAARERDGALRKGAQTKRAEAGRAAVRAQMALDSKKRQHLDDLKAEEKEAAE 465
            MPL+ ++TW E  + + +R+PLKG SR++VD+  A  VV V+F PY++ +DL   V+   +   I  G + L  +K   +VW  +   G  K     RR A+++     +  L +  +  +    +  +R QM+LD  +RQ LDDLKA EK+  E
Sbjct:    1 MPLTPQFTWEEDVSSIALRVPLKGASRKDVDIYVADLVVKVNFKPYVLLVDLHAAVEPENTTVTITNGVVVLVAQKHERRVWKQLGFDGT-KADCLARRKASMARKEAYEQKLSEARKDLKYRNEKQTLRDQMSLDELERQRLDDLKATEKQREE 154          
BLAST of mRNA_M-pyrifera_M_contig115471.3207.1 vs. uniprot
Match: A0A6L2PMY6_COPFO (Dynein axonemal assembly factor 4 n=1 Tax=Coptotermes formosanus TaxID=36987 RepID=A0A6L2PMY6_COPFO)

HSP 1 Score: 79.7 bits (195), Expect = 1.690e-14
Identity = 49/149 (32.89%), Postives = 82/149 (55.03%), Query Frame = 1
Query:   16 EYTWSETETKVTVRIPLKGVSRREVDVQGALAVVGVSFPPYLVQLDLPHEVDDLTSAARIRTGELSLELEKVVPQVWGDIVVSGLDKKQLRERRAAAVSAARERDGALRKGAQTKRAEAGRAAVRAQMALDSKKRQHLDDLKAEEKEAA 462
            +YTW +TE  V +R+PLKGV  R VD+  +   +   F P+L ++ L   V +  S   +  GE+  EL+KV    W D + + + K + +E R   +   +E   A +   + K+AE  R AVR QMA+D ++ Q ++++K + K+ A
Sbjct:    7 DYTWRQTENVVVIRVPLKGVHYRRVDIFSSDTYIKAHFQPFLFEVFLFSSVKEPESKCTLSDGEIIFELQKVERAFW-DKLEANMSKPEQQEMRKKIIERVQENAKAEQDRKRAKKAELDRLAVRQQMAIDGRQHQKIEEIKGDLKKNA 154          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115471.3207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1GBG5_9STRA2.760e-2641.94Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A5A8EGC8_CAFRO2.890e-2442.41CS domain-containing protein n=2 Tax=Cafeteria roe... [more]
A0A067BU44_SAPPC1.360e-2135.44CS domain-containing protein n=1 Tax=Saprolegnia p... [more]
T0QDP2_SAPDV3.980e-1933.54CS domain-containing protein n=2 Tax=Saprolegnia T... [more]
A0A8J4BGF1_9CHLO1.490e-1839.33Dynein axonemal assembly factor 4 n=3 Tax=Volvox a... [more]
A0A1V9ZE91_9STRA3.440e-1834.18CS domain-containing protein n=1 Tax=Achlya hypogy... [more]
A0A6A5ALR5_9STRA3.080e-1735.44CS domain-containing protein n=2 Tax=Aphanomyces a... [more]
D7FQJ5_ECTSI4.480e-1532.72CS domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
W4FNL6_9STRA8.010e-1534.19CS domain-containing protein n=3 Tax=Aphanomyces a... [more]
A0A6L2PMY6_COPFO1.690e-1432.89Dynein axonemal assembly factor 4 n=1 Tax=Coptoter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115471contigM-pyrifera_M_contig115471:18..566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue7.3e-19
Seed eggNOG ortholog44056.XP_009039171.1
KEGG koko:K19758
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0007600,GO:0007605,GO:0008150,GO:0032501,GO:0050877,GO:0050954
EggNOG free text desc.cellular component assembly
EggNOG OGsCOG0457@1,KOG1124@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons2
Model size474
Cds size474
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.3975184-CDS-M-pyrifera_M_contig115471:17..1371622815670.3975184-CDS-M-pyrifera_M_contig115471:17..137Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115471 18..137 +
1692277513.9935365-CDS-M-pyrifera_M_contig115471:17..1371692277513.9935365-CDS-M-pyrifera_M_contig115471:17..137Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115471 18..137 +
1622815670.4131823-CDS-M-pyrifera_M_contig115471:212..5661622815670.4131823-CDS-M-pyrifera_M_contig115471:212..566Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115471 213..566 +
1692277514.005828-CDS-M-pyrifera_M_contig115471:212..5661692277514.005828-CDS-M-pyrifera_M_contig115471:212..566Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115471 213..566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115471.3207.1prot_M-pyrifera_M_contig115471.3207.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115471 18..566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115471.3207.1

>prot_M-pyrifera_M_contig115471.3207.1 ID=prot_M-pyrifera_M_contig115471.3207.1|Name=mRNA_M-pyrifera_M_contig115471.3207.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=158bp
MPLSGEYTWSETETKVTVRIPLKGVSRREVDVQGALAVVGVSFPPYLVQL
DLPHEVDDLTSAARIRTGELSLELEKVVPQVWGDIVVSGLDKKQLRERRA
AAVSAARERDGALRKGAQTKRAEAGRAAVRAQMALDSKKRQHLDDLKAEE
KEAAEVCV
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mRNA from alignment at M-pyrifera_M_contig115471:18..566+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115471.3207.1 ID=mRNA_M-pyrifera_M_contig115471.3207.1|Name=mRNA_M-pyrifera_M_contig115471.3207.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=549bp|location=Sequence derived from alignment at M-pyrifera_M_contig115471:18..566+ (Macrocystis pyrifera P11B4 male)
ATGCCGCTCTCCGGGGAGTACACATGGTCAGAAACGGAAACGAAGGTGAC GGTACGAATTCCCTTGAAGGGCGTTTCTCGCCGCGAGGTGGATGTGCAGG GTGCGTTGGCCGTTGTAGGTGTACTCGTAAGTTGTATGTATGCGCTCACG CCCAGTACACGTCCATCACAAACAGCAACGGCGACGTATGTCAAGGTCAG TTTTCCCCCATACTTGGTACAGCTTGACCTGCCGCATGAGGTTGATGACT TGACGAGCGCGGCCCGGATCCGCACTGGCGAGTTGTCACTTGAGCTGGAG AAGGTGGTGCCGCAGGTGTGGGGCGATATCGTGGTGTCTGGTCTGGATAA GAAGCAACTTCGCGAGAGACGCGCCGCAGCCGTTTCCGCAGCGCGCGAGC GCGACGGTGCGTTGCGGAAGGGAGCACAGACGAAGAGAGCGGAAGCTGGT CGAGCTGCAGTTCGCGCGCAAATGGCGTTGGACAGCAAGAAGCGGCAGCA TTTGGACGATTTGAAGGCGGAGGAGAAGGAGGCGGCGGAGGTGTGTGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115471:18..566+

>mRNA_M-pyrifera_M_contig115471.3207.1 ID=mRNA_M-pyrifera_M_contig115471.3207.1|Name=mRNA_M-pyrifera_M_contig115471.3207.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=948bp|location=Sequence derived from alignment at M-pyrifera_M_contig115471:18..566+ (Macrocystis pyrifera P11B4 male)
ATGCCGCTCTCCGGGGAGTACACATGGTCAGAAACGGAAACGAAGGTGAC
GGTACGAATTCCCTTGAAGGGCGTTTCTCGCCGCGAGGTGGATGTGCAGG
GTGCGTTGGCCGTTGTAGGTATGCCGCTCTCCGGGGAGTACACATGGTCA
GAAACGGAAACGAAGGTGACGGTACGAATTCCCTTGAAGGGCGTTTCTCG
CCGCGAGGTGGATGTGCAGGGTGCGTTGGCCGTTGTAGGTGTCAGTTTTC
CCCCATACTTGGTACAGCTTGACCTGCCGCATGAGGTTGATGACTTGACG
AGCGCGGCCCGGATCCGCACTGGCGAGTTGTCACTTGAGCTGGAGAAGGT
GGTGCCGCAGGTGTGGGGCGATATCGTGGTGTCTGGTCTGGATAAGAAGC
AACTTCGCGAGAGACGCGCCGCAGCCGTTTCCGCAGCGCGCGAGCGCGAC
GGTGCGTTGCGGAAGGGAGCACAGACGAAGAGAGCGGAAGCTGGTCGAGC
TGCAGTTCGCGCGCAAATGGCGTTGGACAGCAAGAAGCGGCAGCATTTGG
ACGATTTGAAGGCGGAGGAGAAGGAGGCGGCGGAGGTGTGTGTGGTCAGT
TTTCCCCCATACTTGGTACAGCTTGACCTGCCGCATGAGGTTGATGACTT
GACGAGCGCGGCCCGGATCCGCACTGGCGAGTTGTCACTTGAGCTGGAGA
AGGTGGTGCCGCAGGTGTGGGGCGATATCGTGGTGTCTGGTCTGGATAAG
AAGCAACTTCGCGAGAGACGCGCCGCAGCCGTTTCCGCAGCGCGCGAGCG
CGACGGTGCGTTGCGGAAGGGAGCACAGACGAAGAGAGCGGAAGCTGGTC
GAGCTGCAGTTCGCGCGCAAATGGCGTTGGACAGCAAGAAGCGGCAGCAT
TTGGACGATTTGAAGGCGGAGGAGAAGGAGGCGGCGGAGGTGTGTGTG
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