mRNA_M-pyrifera_M_contig115294.3183.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115294.3183.1
Unique NamemRNA_M-pyrifera_M_contig115294.3183.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115294.3183.1 vs. uniprot
Match: UPI00166E414C (glycoside hydrolase family 32 protein n=1 Tax=Edaphobacter acidisoli TaxID=2040573 RepID=UPI00166E414C)

HSP 1 Score: 55.8 bits (133), Expect = 1.010e-7
Identity = 31/52 (59.62%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:    4 ILDAGDYYAAKTSLF-GEERLLWGWVQEARAEAAYAAAGWAGAQALPRELGL 156
            ILD G YYA KT L     R+LWGW+QEAR    Y AAGWAG  +LPR L L
Sbjct:  293 ILDYGSYYAPKTQLDKAGNRILWGWIQEARPLEEYKAAGWAGMMSLPRVLSL 344
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BLAST of mRNA_M-pyrifera_M_contig115294.3183.1 vs. uniprot
Match: A0A2V7X744_9BACT (Beta-fructosidase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V7X744_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 6.640e-7
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:    4 ILDAGDYYAAKTSLFGE-ERLLWGWVQEARAEAAYAAAGWAGAQALPRELGL 156
            ++D G YYAAKT L     R+LWGW+ EAR++A   AAGWAG  +LPR L L
Sbjct:  293 VVDWGSYYAAKTMLDRTANRILWGWLPEARSDADLIAAGWAGVMSLPRVLSL 344
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BLAST of mRNA_M-pyrifera_M_contig115294.3183.1 vs. uniprot
Match: A0A2V9IJ77_9BACT (Uncharacterized protein n=3 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9IJ77_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 1.700e-6
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    4 ILDAGD-YYAAKTSLF-GEERLLWGWVQEARAEAAYAAAGWAGAQALPRELGL 156
            ++D  D YYAAK+ L  G  R+LWGW++EAR EAA   AGWAG  +LPR L L
Sbjct:  289 LVDGSDLYYAAKSFLGQGGRRILWGWLREARTEAAQRQAGWAGVMSLPRVLSL 341
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115294.3183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI00166E414C1.010e-759.62glycoside hydrolase family 32 protein n=1 Tax=Edap... [more]
A0A2V7X744_9BACT6.640e-755.77Beta-fructosidase n=1 Tax=Acidobacteria bacterium ... [more]
A0A2V9IJ77_9BACT1.700e-656.60Uncharacterized protein n=3 Tax=Acidobacteria bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115294contigM-pyrifera_M_contig115294:110..265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815669.2431374-CDS-M-pyrifera_M_contig115294:109..2651622815669.2431374-CDS-M-pyrifera_M_contig115294:109..265Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115294 110..265 +
1692277513.4756234-CDS-M-pyrifera_M_contig115294:109..2651692277513.4756234-CDS-M-pyrifera_M_contig115294:109..265Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115294 110..265 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115294.3183.1prot_M-pyrifera_M_contig115294.3183.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115294 110..265 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115294.3183.1

>prot_M-pyrifera_M_contig115294.3183.1 ID=prot_M-pyrifera_M_contig115294.3183.1|Name=mRNA_M-pyrifera_M_contig115294.3183.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=52bp
MILDAGDYYAAKTSLFGEERLLWGWVQEARAEAAYAAAGWAGAQALPREL
GL
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mRNA from alignment at M-pyrifera_M_contig115294:110..265+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115294.3183.1 ID=mRNA_M-pyrifera_M_contig115294.3183.1|Name=mRNA_M-pyrifera_M_contig115294.3183.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=156bp|location=Sequence derived from alignment at M-pyrifera_M_contig115294:110..265+ (Macrocystis pyrifera P11B4 male)
ATGATATTGGATGCAGGCGATTACTACGCCGCAAAAACGTCTCTTTTCGG
CGAGGAGCGCCTGTTATGGGGATGGGTGCAGGAGGCGAGAGCGGAAGCGG
CTTACGCGGCTGCTGGGTGGGCAGGAGCCCAAGCGCTGCCTAGAGAGCTT
GGCCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115294:110..265+

>mRNA_M-pyrifera_M_contig115294.3183.1 ID=mRNA_M-pyrifera_M_contig115294.3183.1|Name=mRNA_M-pyrifera_M_contig115294.3183.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig115294:110..265+ (Macrocystis pyrifera P11B4 male)
ATGATATTGGATGCAGGCGATTACTACGCCGCAAAAACGTCTCTTTTCGG
CGAGGAGCGCCTGTTATGGGGATGGGTGCAGGAGGCGAGAGCGGAAGCGG
CTTACGCGGCTGCTGGGTGGGCAGGAGCCCAAGCGCTGCCTAGAGAGCTT
GGCCTCATGATATTGGATGCAGGCGATTACTACGCCGCAAAAACGTCTCT
TTTCGGCGAGGAGCGCCTGTTATGGGGATGGGTGCAGGAGGCGAGAGCGG
AAGCGGCTTACGCGGCTGCTGGGTGGGCAGGAGCCCAAGCGCTGCCTAGA
GAGCTTGGCCTC
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