mRNA_M-pyrifera_M_contig115032.3125.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115032.3125.1
Unique NamemRNA_M-pyrifera_M_contig115032.3125.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115032.3125.1 vs. uniprot
Match: A0A356EPP3_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A356EPP3_9PLAN)

HSP 1 Score: 72.0 bits (175), Expect = 2.090e-13
Identity = 48/134 (35.82%), Postives = 71/134 (52.99%), Query Frame = 1 
Query:   22 LSSDRGGFTMMELTVAAALLGTVFVVTLPLLKHVRVSRDAAQQQFIAQQEAANLMELLVL---NGATEAADNSITLSPEAASHLPEADVTITREPT---GNKLQRVTVAIAWTNDAGERSRPAMLTAWFPVAGE 405
            +++ R GF++ME TVA ALL     + + +L     +R AA Q+  A +EAAN+ME L+    +  T  +  ++TL  EA   LP A +T+   P+   G    RVT+ +AW   AG  + P  L AW   A E
Sbjct:    1 MTTKRSGFSLMETTVAIALLAAAGAICVQVLVAGAAARRAADQRLFASREAANVMERLMAAPRDRLTPESVETLTLRDEAIDVLPGAKLTVALAPSTDEGPPATRVTLTLAWKTRAGTAALPVRLVAWHYGAAE 134
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BLAST of mRNA_M-pyrifera_M_contig115032.3125.1 vs. uniprot
Match: UPI0012611CE3 (prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Tautonia marina TaxID=2653855 RepID=UPI0012611CE3)

HSP 1 Score: 55.5 bits (132), Expect = 6.860e-7
Identity = 41/129 (31.78%), Postives = 65/129 (50.39%), Query Frame = 1 
Query:   13 RHNLSSDRGGFTMMELTVAAALLGTVFVVTLPLLKHVRVSRDAAQQQFIAQQEAANLMELLVLNGATEAADNS-ITLSPEAASHLPEADVTITREPT---GNKLQRVTVAIAWTNDAGERSRPAMLTAW 387
            R    S RGGFT++E TVA  LL      TL  +  +   R A  ++ +A +E  +L++ +V    TEA  N+ ++LS E    LP+  +T+ RE     G  +QR+TV + + +  G  +    L  W
Sbjct:   15 RSRSGSPRGGFTLIEATVAVVLLLVGMTTTLQAVSWIARERQALDRRALAIRETEHLLDRVV---RTEANANAPLSLSSEGERALPDGTITVDREEEEQDGLTMQRITVTLRYQDRPGIPASVVRLRTW 140
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115032.3125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A356EPP3_9PLAN2.090e-1335.82Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
UPI0012611CE36.860e-731.78prepilin-type N-terminal cleavage/methylation doma... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115032contigM-pyrifera_M_contig115032:34..447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size414
Cds size414
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815666.4277222-CDS-M-pyrifera_M_contig115032:33..4471622815666.4277222-CDS-M-pyrifera_M_contig115032:33..447Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115032 34..447 -
1692277512.238159-CDS-M-pyrifera_M_contig115032:33..4471692277512.238159-CDS-M-pyrifera_M_contig115032:33..447Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115032 34..447 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115032.3125.1prot_M-pyrifera_M_contig115032.3125.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115032 34..447 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115032.3125.1

>prot_M-pyrifera_M_contig115032.3125.1 ID=prot_M-pyrifera_M_contig115032.3125.1|Name=mRNA_M-pyrifera_M_contig115032.3125.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
MKHLRHNLSSDRGGFTMMELTVAAALLGTVFVVTLPLLKHVRVSRDAAQQ
QFIAQQEAANLMELLVLNGATEAADNSITLSPEAASHLPEADVTITREPT
GNKLQRVTVAIAWTNDAGERSRPAMLTAWFPVAGETP*
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mRNA from alignment at M-pyrifera_M_contig115032:34..447-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115032.3125.1 ID=mRNA_M-pyrifera_M_contig115032.3125.1|Name=mRNA_M-pyrifera_M_contig115032.3125.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig115032:34..447- (Macrocystis pyrifera P11B4 male)
ATGAAACACCTCCGTCACAACTTGTCATCAGATCGTGGCGGCTTCACGAT
GATGGAACTGACGGTCGCCGCAGCGTTGCTGGGCACTGTGTTTGTGGTGA
CCCTGCCATTGCTCAAGCACGTGCGTGTCTCCCGTGACGCGGCCCAACAA
CAGTTCATCGCTCAGCAAGAGGCAGCCAACCTCATGGAACTGTTGGTGCT
GAATGGTGCGACAGAAGCAGCGGACAACTCGATCACCCTCTCTCCCGAGG
CAGCGTCACACTTGCCTGAGGCTGACGTCACGATCACTCGTGAGCCGACT
GGCAACAAGCTGCAACGAGTGACAGTCGCCATCGCGTGGACGAATGACGC
TGGCGAACGCTCCAGGCCAGCGATGCTAACAGCGTGGTTCCCAGTCGCAG
GGGAGACTCCATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115032:34..447-

>mRNA_M-pyrifera_M_contig115032.3125.1 ID=mRNA_M-pyrifera_M_contig115032.3125.1|Name=mRNA_M-pyrifera_M_contig115032.3125.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig115032:34..447- (Macrocystis pyrifera P11B4 male)
ATGAAACACCTCCGTCACAACTTGTCATCAGATCGTGGCGGCTTCACGAT
GATGGAACTGACGGTCGCCGCAGCGTTGCTGGGCACTGTGTTTGTGGTGA
CCCTGCCATTGCTCAAGCACGTGCGTGTCTCCCGTGACGCGGCCCAACAA
CAGTTCATCGCTCAGCAAGAGGCAGCCAACCTCATGGAACTGTTGGTGCT
GAATGGTGCGACAGAAGCAGCGGACAACTCGATCACCCTCTCTCCCGAGG
CAGCGTCACACTTGCCTGAGGCTGACGTCACGATCACTCGTGAGCCGACT
GGCAACAAGCTGCAACGAGTGACAGTCGCCATCGCGTGGACGAATGACGC
TGGCGAACGCTCCAGGCCAGCGATGCTAACAGCGTGGTTCCCAGTCGCAG
GGGAGACTCCATGAATGAAACACCTCCGTCACAACTTGTCATCAGATCGT
GGCGGCTTCACGATGATGGAACTGACGGTCGCCGCAGCGTTGCTGGGCAC
TGTGTTTGTGGTGACCCTGCCATTGCTCAAGCACGTGCGTGTCTCCCGTG
ACGCGGCCCAACAACAGTTCATCGCTCAGCAAGAGGCAGCCAACCTCATG
GAACTGTTGGTGCTGAATGGTGCGACAGAAGCAGCGGACAACTCGATCAC
CCTCTCTCCCGAGGCAGCGTCACACTTGCCTGAGGCTGACGTCACGATCA
CTCGTGAGCCGACTGGCAACAAGCTGCAACGAGTGACAGTCGCCATCGCG
TGGACGAATGACGCTGGCGAACGCTCCAGGCCAGCGATGCTAACAGCGTG
GTTCCCAGTCGCAGGGGAGACTCCATGA
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