mRNA_M-pyrifera_M_contig114822.3082.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114822.3082.1
Unique NamemRNA_M-pyrifera_M_contig114822.3082.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114822.3082.1 vs. uniprot
Match: A0A517W8E4_9PLAN (Beta_helix domain-containing protein n=8 Tax=Gimesia TaxID=1649453 RepID=A0A517W8E4_9PLAN)

HSP 1 Score: 296 bits (757), Expect = 9.740e-94
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1
Query:    1 RNDLIKDCPEPAAIERLPAFADAHSGNVNERVRAYLSVNCGHCHSPGGNARTTGLDLRYLQQDPAKIGVWKTPVAAGRGSGGRSYDIVPGAPEKSILMHRLQSNDLAARMPNIGNRIVHQEAVELIRQWISEMEATNDEAAQ 426
            RNDLIKDCPEPAAIERLPAFADAHSGNVNERVRAYLSVNCGHCHSPGGNARTTGLDLRYLQQDPAKIGVWKTPVAAGRGSGGRSYDIVPGAPEKSILMHRLQSNDLAARMPNIGNRIVHQEAVELIRQWISEMEATNDEAAQ
Sbjct:  636 RNDLIKDCPEPAAIERLPAFADAHSGNVNERVRAYLSVNCGHCHSPGGNARTTGLDLRYLQQDPAKIGVWKTPVAAGRGSGGRSYDIVPGAPEKSILMHRLQSNDLAARMPNIGNRIVHQEAVELIRQWISEMEATNDEAAQ 777          
BLAST of mRNA_M-pyrifera_M_contig114822.3082.1 vs. uniprot
Match: A0A517Q323_9PLAN (Beta_helix domain-containing protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517Q323_9PLAN)

HSP 1 Score: 255 bits (652), Expect = 2.410e-78
Identity = 119/142 (83.80%), Postives = 132/142 (92.96%), Query Frame = 1
Query:    1 RNDLIKDCPEPAAIERLPAFADAHSGNVNERVRAYLSVNCGHCHSPGGNARTTGLDLRYLQQDPAKIGVWKTPVAAGRGSGGRSYDIVPGAPEKSILMHRLQSNDLAARMPNIGNRIVHQEAVELIRQWISEMEATNDEAAQ 426
            R DL+ + PE  ++++LPAF D HSG+V+ERVRAYLSVNCGHCHSPGGNARTTGLDLRYLQQDPAKIGVWKTPVAAGRGSGGRSYDIVPGAPEKSILMHRLQSNDLAARMPNIGNRIVHQEAVELIRQWIS+M+ T + A++
Sbjct:  630 RKDLLSEAPEMGSVQKLPAFDDPHSGSVSERVRAYLSVNCGHCHSPGGNARTTGLDLRYLQQDPAKIGVWKTPVAAGRGSGGRSYDIVPGAPEKSILMHRLQSNDLAARMPNIGNRIVHQEAVELIRQWISQMDRTPEAASE 771          
BLAST of mRNA_M-pyrifera_M_contig114822.3082.1 vs. uniprot
Match: A0A3D3QZQ0_9PLAN (Uncharacterized protein n=1 Tax=Gimesia maris TaxID=122 RepID=A0A3D3QZQ0_9PLAN)

HSP 1 Score: 219 bits (559), Expect = 1.380e-70
Identity = 101/133 (75.94%), Postives = 115/133 (86.47%), Query Frame = 1
Query:    1 RNDLIKDCPEPAAIERLPAFADAHSGNVNERVRAYLSVNCGHCHSPGGNARTTGLDLRYLQQDPAKIGVWKTPVAAGRGSGGRSYDIVPGAPEKSILMHRLQSNDLAARMPNIGNRIVHQEAVELIRQWISEM 399
            R  L++  P    I + P F+D HSG V++RVRAYL+VNC HCHSPGGNARTTGLDLR+ Q+DPA+ GVWK PVAAGRGSGGRSYDIVPGAPEKSILMHRLQS+DLAARMPNIGNR++HQEAV+LI QWISEM
Sbjct:   62 RKGLLQGTPALKEITKFPEFSDPHSGTVDQRVRAYLAVNCAHCHSPGGNARTTGLDLRFSQEDPARWGVWKNPVAAGRGSGGRSYDIVPGAPEKSILMHRLQSSDLAARMPNIGNRVIHQEAVDLIGQWISEM 194          
BLAST of mRNA_M-pyrifera_M_contig114822.3082.1 vs. uniprot
Match: A0A517X275_9PLAN (Beta_helix domain-containing protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517X275_9PLAN)

HSP 1 Score: 232 bits (592), Expect = 1.410e-69
Identity = 111/139 (79.86%), Postives = 119/139 (85.61%), Query Frame = 1
Query:    1 RNDLIKDCPEPAAIERLPAFADAHSGNVNERVRAYLSVNCGHCHSPGGNARTTGLDLRYLQQDPAKIGVWKTPVAAGRGSGGRSYDIVPGAPEKSILMHRLQSNDLAARMPNIGNRIVHQEAVELIRQWISEMEATNDE 417
            R DLI+  PEPA IE L  F + HSGN+N+RVRAYLSVNC HCHSPGGNARTTGLDLR  Q DP K+GVWKTPVAAGRGSGGRSYDIVPG PEKSILMHRLQS+DLAARMPNIGNRIVHQEAV+LI  WIS+ME T  E
Sbjct:  637 RMDLIESAPEPAVIEMLADFDNPHSGNLNQRVRAYLSVNCAHCHSPGGNARTTGLDLRLSQTDPVKLGVWKTPVAAGRGSGGRSYDIVPGKPEKSILMHRLQSSDLAARMPNIGNRIVHQEAVDLIHTWISQMEKTVSE 775          
BLAST of mRNA_M-pyrifera_M_contig114822.3082.1 vs. uniprot
Match: A0A518I8H8_9PLAN (Beta_helix domain-containing protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518I8H8_9PLAN)

HSP 1 Score: 223 bits (567), Expect = 6.030e-66
Identity = 105/134 (78.36%), Postives = 115/134 (85.82%), Query Frame = 1
Query:    1 RNDLIKDCPEPAAIERLPAFADAHSGNVNERVRAYLSVNCGHCHSPGGNARTTGLDLRYLQQDPAKIGVWKTPVAAGRGSGGRSYDIVPGAPEKSILMHRLQSNDLAARMPNIGNRIVHQEAVELIRQWISEME 402
            RN  ++  P+P +IE L  F +  SG +++RVRAYLSVNC HCHSPGGNARTTGLDLR  Q DPAKIGVWKTPVAAGRGSGGR YDIVPG PEKSILMHRLQSNDLAARMPNIGNRIVHQEAV+LIRQWI EM+
Sbjct:  637 RNRFLEAAPKPESIEVLADFDEPESGTLDQRVRAYLSVNCAHCHSPGGNARTTGLDLRLTQSDPAKIGVWKTPVAAGRGSGGRDYDIVPGEPEKSILMHRLQSNDLAARMPNIGNRIVHQEAVDLIRQWIGEMQ 770          
BLAST of mRNA_M-pyrifera_M_contig114822.3082.1 vs. uniprot
Match: A0A2E2CBD3_9PLAN (Beta_helix domain-containing protein n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2CBD3_9PLAN)

HSP 1 Score: 218 bits (556), Expect = 1.710e-64
Identity = 102/133 (76.69%), Postives = 114/133 (85.71%), Query Frame = 1
Query:    1 RNDLIKDCPEPAAIERLPAFADAHSGNVNERVRAYLSVNCGHCHSPGGNARTTGLDLRYLQQDPAKIGVWKTPVAAGRGSGGRSYDIVPGAPEKSILMHRLQSNDLAARMPNIGNRIVHQEAVELIRQWISEM 399
            R  L++  P    I +LP F+D HSG V++R RAYL+VNC HCHSPGGNARTTGLDLR+ QQDPA+ GVWK PVAAGRGSGG SYDIVPGAPEKSILMHRLQS+DLAARMPNIGNR+VHQEAV+LI QWISEM
Sbjct:  614 RKGLLQGTPGLNKISKLPDFSDPHSGTVDQRARAYLAVNCAHCHSPGGNARTTGLDLRFSQQDPARWGVWKNPVAAGRGSGGHSYDIVPGAPEKSILMHRLQSSDLAARMPNIGNRVVHQEAVDLIGQWISEM 746          
BLAST of mRNA_M-pyrifera_M_contig114822.3082.1 vs. uniprot
Match: A6CG32_9PLAN (Beta_helix domain-containing protein n=7 Tax=Planctomycetaceae TaxID=126 RepID=A6CG32_9PLAN)

HSP 1 Score: 216 bits (551), Expect = 9.020e-64
Identity = 100/133 (75.19%), Postives = 115/133 (86.47%), Query Frame = 1
Query:    1 RNDLIKDCPEPAAIERLPAFADAHSGNVNERVRAYLSVNCGHCHSPGGNARTTGLDLRYLQQDPAKIGVWKTPVAAGRGSGGRSYDIVPGAPEKSILMHRLQSNDLAARMPNIGNRIVHQEAVELIRQWISEM 399
            R  L++  P    I +LP F++  SG V++RVRAYL+VNC HCHSPGGNARTTGLDLR+ Q+DPA+ GVWK PVAAGRGSGGRSYDIVPGAPEKSILMHRLQS+DLAARMPNIGNR++HQEAV+LI QWISEM
Sbjct:  614 RKGLLQGTPALKEITKLPEFSEPRSGTVDQRVRAYLAVNCAHCHSPGGNARTTGLDLRFSQEDPARWGVWKNPVAAGRGSGGRSYDIVPGAPEKSILMHRLQSSDLAARMPNIGNRVIHQEAVDLIGQWISEM 746          
BLAST of mRNA_M-pyrifera_M_contig114822.3082.1 vs. uniprot
Match: A0A3C0AS01_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3C0AS01_9PLAN)

HSP 1 Score: 191 bits (484), Expect = 1.810e-60
Identity = 89/101 (88.12%), Postives = 95/101 (94.06%), Query Frame = 1
Query:   97 RAYLSVNCGHCHSPGGNARTTGLDLRYLQQDPAKIGVWKTPVAAGRGSGGRSYDIVPGAPEKSILMHRLQSNDLAARMPNIGNRIVHQEAVELIRQWISEM 399
            RAYL+VNC HCHSPGGNARTTGLDLR+ QQDPA+ GVWK PVAAGRGSGG SYDIVPGAPEKSILMHRLQS+DLAARMPNIGNR+VHQEAV+LI QWISEM
Sbjct:    2 RAYLAVNCAHCHSPGGNARTTGLDLRFSQQDPARWGVWKNPVAAGRGSGGHSYDIVPGAPEKSILMHRLQSSDLAARMPNIGNRVVHQEAVDLIGQWISEM 102          
BLAST of mRNA_M-pyrifera_M_contig114822.3082.1 vs. uniprot
Match: A0A356AF04_9PLAN (PSCyt1 domain-containing protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A356AF04_9PLAN)

HSP 1 Score: 165 bits (417), Expect = 5.270e-48
Identity = 69/126 (54.76%), Postives = 95/126 (75.40%), Query Frame = 1
Query:   13 IKDCPEPAAIERLPAFADAHSGNVNERVRAYLSVNCGHCHSPGGNARTTGLDLRYLQQDPAKIGVWKTPVAAGRGSGGRSYDIVPGAPEKSILMHRLQSNDLAARMPNIGNRIVHQEAVELIRQWI 390
            +K+CP+  ++  LP F D  +G++ +R RA+L VNC HCH+P G+ART+GLDL   Q  PAK GVWK+PVA GRGSGGR +DIVPG P++SIL++R++SN+   RMPN+   + H E++ELIR WI
Sbjct:  149 LKECPDIESLPALPVFDDPSTGSIEQRTRAWLDVNCAHCHNPVGSARTSGLDLSLFQNTPAKYGVWKSPVATGRGSGGRKFDIVPGKPDESILVYRIESNEPGVRMPNLARNLSHAESIELIRAWI 274          
BLAST of mRNA_M-pyrifera_M_contig114822.3082.1 vs. uniprot
Match: A0A3A0DMJ1_9BACT (Beta_helix domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3A0DMJ1_9BACT)

HSP 1 Score: 172 bits (436), Expect = 2.170e-47
Identity = 77/132 (58.33%), Postives = 97/132 (73.48%), Query Frame = 1
Query:   10 LIKDCPEPAAIERLPAFADAHSGNVNERVRAYLSVNCGHCHSPGGNARTTGLDLRYLQQDPAKIGVWKTPVAAGRGSGGRSYDIVPGAPEKSILMHRLQSNDLAARMPNIGNRIVHQEAVELIRQWISEMEA 405
            ++   P   A+  LP F D HSG++ ER RA+L VNC HCHSPGG AR +GLDLR+ Q D AK+GVWK PVAAG GSGGR YDIVPG P++SIL++RL+S D +  MPN+G R+VH E  E++R WI+ M A
Sbjct:  630 MLDGLPAGDAVAALPRFDDPHSGSIAERARAWLDVNCAHCHSPGGTARPSGLDLRWDQTDLAKLGVWKNPVAAGHGSGGRLYDIVPGRPDESILLYRLESEDPSIAMPNVGRRLVHSEGAEVVRSWIAAMPA 761          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114822.3082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517W8E4_9PLAN9.740e-94100.00Beta_helix domain-containing protein n=8 Tax=Gimes... [more]
A0A517Q323_9PLAN2.410e-7883.80Beta_helix domain-containing protein n=2 Tax=Gimes... [more]
A0A3D3QZQ0_9PLAN1.380e-7075.94Uncharacterized protein n=1 Tax=Gimesia maris TaxI... [more]
A0A517X275_9PLAN1.410e-6979.86Beta_helix domain-containing protein n=2 Tax=Gimes... [more]
A0A518I8H8_9PLAN6.030e-6678.36Beta_helix domain-containing protein n=2 Tax=Gimes... [more]
A0A2E2CBD3_9PLAN1.710e-6476.69Beta_helix domain-containing protein n=4 Tax=Planc... [more]
A6CG32_9PLAN9.020e-6475.19Beta_helix domain-containing protein n=7 Tax=Planc... [more]
A0A3C0AS01_9PLAN1.810e-6088.12Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A356AF04_9PLAN5.270e-4854.76PSCyt1 domain-containing protein (Fragment) n=1 Ta... [more]
A0A3A0DMJ1_9BACT2.170e-4758.33Beta_helix domain-containing protein n=1 Tax=Planc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114822contigM-pyrifera_M_contig114822:2..430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score218.4
Seed ortholog evalue2.2e-54
Seed eggNOG ortholog344747.PM8797T_17534
Preferred nameMA20_15840
Hectar predicted targeting categoryother localisation
EggNOG free text desc.polygalacturonase activity
EggNOG OGsCOG5434@1,COG5434@2
COG Functional cat.M
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size429
Cds size429
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815664.1542678-CDS-M-pyrifera_M_contig114822:1..4301622815664.1542678-CDS-M-pyrifera_M_contig114822:1..430Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114822 2..430 +
1692277511.1346867-CDS-M-pyrifera_M_contig114822:1..4301692277511.1346867-CDS-M-pyrifera_M_contig114822:1..430Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114822 2..430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114822.3082.1prot_M-pyrifera_M_contig114822.3082.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114822 2..430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114822.3082.1

>prot_M-pyrifera_M_contig114822.3082.1 ID=prot_M-pyrifera_M_contig114822.3082.1|Name=mRNA_M-pyrifera_M_contig114822.3082.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
RNDLIKDCPEPAAIERLPAFADAHSGNVNERVRAYLSVNCGHCHSPGGNA
RTTGLDLRYLQQDPAKIGVWKTPVAAGRGSGGRSYDIVPGAPEKSILMHR
LQSNDLAARMPNIGNRIVHQEAVELIRQWISEMEATNDEAAQ*
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mRNA from alignment at M-pyrifera_M_contig114822:2..430+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114822.3082.1 ID=mRNA_M-pyrifera_M_contig114822.3082.1|Name=mRNA_M-pyrifera_M_contig114822.3082.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig114822:2..430+ (Macrocystis pyrifera P11B4 male)
CGCAATGATCTGATCAAGGATTGCCCTGAGCCTGCCGCGATTGAGCGGCT GCCGGCTTTTGCTGATGCCCACTCGGGTAATGTCAACGAGCGGGTGCGGG CGTATCTCTCAGTGAATTGCGGACACTGTCACAGTCCCGGTGGAAATGCA CGGACCACGGGTCTCGACCTGCGATACCTGCAACAGGATCCTGCGAAGAT TGGTGTCTGGAAAACCCCTGTGGCGGCGGGACGGGGTTCCGGTGGACGGA GCTACGACATCGTTCCCGGTGCGCCGGAGAAATCGATTCTGATGCATCGT CTACAGTCAAACGATCTGGCTGCACGCATGCCGAACATAGGGAACCGGAT TGTGCATCAGGAAGCGGTTGAGCTGATTCGGCAGTGGATCAGTGAAATGG AAGCGACAAACGACGAAGCTGCGCAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114822:2..430+

>mRNA_M-pyrifera_M_contig114822.3082.1 ID=mRNA_M-pyrifera_M_contig114822.3082.1|Name=mRNA_M-pyrifera_M_contig114822.3082.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig114822:2..430+ (Macrocystis pyrifera P11B4 male)
CGCAATGATCTGATCAAGGATTGCCCTGAGCCTGCCGCGATTGAGCGGCT
GCCGGCTTTTGCTGATGCCCACTCGGGTAATGTCAACGAGCGGGTGCGGG
CGTATCTCTCAGTGAATTGCGGACACTGTCACAGTCCCGGTGGAAATGCA
CGGACCACGGGTCTCGACCTGCGATACCTGCAACAGGATCCTGCGAAGAT
TGGTGTCTGGAAAACCCCTGTGGCGGCGGGACGGGGTTCCGGTGGACGGA
GCTACGACATCGTTCCCGGTGCGCCGGAGAAATCGATTCTGATGCATCGT
CTACAGTCAAACGATCTGGCTGCACGCATGCCGAACATAGGGAACCGGAT
TGTGCATCAGGAAGCGGTTGAGCTGATTCGGCAGTGGATCAGTGAAATGG
AAGCGACAAACGACGAAGCTGCGCAGTAGCGCAATGATCTGATCAAGGAT
TGCCCTGAGCCTGCCGCGATTGAGCGGCTGCCGGCTTTTGCTGATGCCCA
CTCGGGTAATGTCAACGAGCGGGTGCGGGCGTATCTCTCAGTGAATTGCG
GACACTGTCACAGTCCCGGTGGAAATGCACGGACCACGGGTCTCGACCTG
CGATACCTGCAACAGGATCCTGCGAAGATTGGTGTCTGGAAAACCCCTGT
GGCGGCGGGACGGGGTTCCGGTGGACGGAGCTACGACATCGTTCCCGGTG
CGCCGGAGAAATCGATTCTGATGCATCGTCTACAGTCAAACGATCTGGCT
GCACGCATGCCGAACATAGGGAACCGGATTGTGCATCAGGAAGCGGTTGA
GCTGATTCGGCAGTGGATCAGTGAAATGGAAGCGACAAACGACGAAGCTG
CGCAGTAG
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