mRNA_M-pyrifera_M_contig114777.3067.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114777.3067.1
Unique NamemRNA_M-pyrifera_M_contig114777.3067.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114777.3067.1 vs. uniprot
Match: A0A2N3I0Z2_9BACT (Thioredoxin domain-containing protein n=1 Tax=Labilibaculum filiforme TaxID=1940526 RepID=A0A2N3I0Z2_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 8.070e-8
Identity = 39/115 (33.91%), Postives = 64/115 (55.65%), Query Frame = 1
Query:    7 AQGIDFNKITYEEAIDKAIEEEKLVMILVRFS-NDPFASAMESIYKNEEVADYYNTHFINVDKEIDIRNPEDMIFLKDFEIESSPSYIYLNAEYEQIIAIYNGRTDRSSDFLEQA 348
            AQGI+F K TYEE + KA  E KLV I        P     + ++  E++  +YNT+F+ +  ++D+   E +     +E++S P+ + LN E E ++   NGRT  + D ++QA
Sbjct:   19 AQGINFEKCTYEEGLIKANNENKLVFIDCYTEWCGPCKRLAKEVFTQEKIGAFYNTNFVCL--KMDMEKGEGIELASFYEVKSYPTLLILNTEGE-VLGRMNGRT--AEDLIDQA 128          
BLAST of mRNA_M-pyrifera_M_contig114777.3067.1 vs. uniprot
Match: A0A8J6Q5F9_9FLAO (Thioredoxin family protein n=1 Tax=Aestuariibaculum sediminum TaxID=2770637 RepID=A0A8J6Q5F9_9FLAO)

HSP 1 Score: 59.7 bits (143), Expect = 9.340e-8
Identity = 46/139 (33.09%), Postives = 73/139 (52.52%), Query Frame = 1
Query:    4 FAQGIDFNKITYEEAIDKAIEEEKLVMI-LVRFSNDPFASAMESIYKNEEVADYYNTHFINVDKEIDIRNPEDMIFLKDFEIESSPSYIYLNAEYEQIIAIYNGRTDRSSD-FLEQAKVAVQGIC--YGLEKIMEDYPN 408
            FAQGI+F  I+ EEA+DKA +E KLV I        P  S  + ++  +EV D YN  FI++  ++D    E     + + + S P+ ++LN++     A+Y       +D F+E  + AV  +   Y L K+ E+YP 
Sbjct:   20 FAQGINFQHISLEEALDKAEKENKLVFIDFYTTWCAPCKSLAKFVFPLKEVGDLYNKEFISI--KLDAER-EGAPAARKYNVSSYPTLLFLNSKGT---AVYKDTGSLPTDAFIELGRKAVASVSSEYSLVKLKEEYPK 152          
BLAST of mRNA_M-pyrifera_M_contig114777.3067.1 vs. uniprot
Match: UPI001F0A2787 (DUF255 domain-containing protein n=1 Tax=Aestuariibaculum sp. L182 TaxID=2920935 RepID=UPI001F0A2787)

HSP 1 Score: 59.3 bits (142), Expect = 1.250e-7
Identity = 43/137 (31.39%), Postives = 69/137 (50.36%), Query Frame = 1
Query:    7 AQGIDFNKITYEEAIDKAIEEEKLVMI-LVRFSNDPFASAMESIYKNEEVADYYNTHFINVDKEIDIRNPEDMIFLKDFEIESSPSYIYLNAEYEQIIAIYNGRTDRSSDFLEQAK--VAVQGICYGLEKIMEDYPN 408
            AQGI+F  I+ EEA++KA  E+KLV I        P  S  ++++   EV   YN  +IN+  + +    E +   K + + S P+Y+YLN+     I      T    DF++  +  VA +   + LEK+   +PN
Sbjct:   21 AQGIEFQHISLEEALEKAKSEDKLVFIDFYTTWCAPCKSMAKNVFTLPEVGAVYNKEYINIKLDAE---KEGLPAAKKYLVNSYPTYVYLNSNGN--IVYKESGTRMPDDFIQLGRDAVASENSQFSLEKLQAKFPN 152          
BLAST of mRNA_M-pyrifera_M_contig114777.3067.1 vs. uniprot
Match: A0A2G6LQW4_9FLAO (Disulfide isomerase n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A2G6LQW4_9FLAO)

HSP 1 Score: 58.9 bits (141), Expect = 1.660e-7
Identity = 33/94 (35.11%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    4 FAQGIDFNKITYEEAIDKAIEEEKLVMILVRFS-NDPFASAMESIYKNEEVADYYNTHFINVDKEIDIRNPEDMIFLKDFEIESSPSYIYLNAE 282
            ++QGI F K TY+E I+KA +E KLV I    S   P    + +++  ++V D+YN +FIN   +ID+   E     ++F + S P+Y+++N +
Sbjct:   17 YSQGIHFEKTTYQELINKAKKENKLVFIDAYASWCGPCKMMVRNVFSQKKVGDFYNKNFINA--KIDMEKGEGRKIAQNFRVFSYPTYLFINGD 108          
BLAST of mRNA_M-pyrifera_M_contig114777.3067.1 vs. uniprot
Match: UPI0013799A7A (thioredoxin family protein n=1 Tax=Odoribacter sp. Z80 TaxID=2304575 RepID=UPI0013799A7A)

HSP 1 Score: 58.5 bits (140), Expect = 2.360e-7
Identity = 44/137 (32.12%), Postives = 77/137 (56.20%), Query Frame = 1
Query:    4 FAQGIDFNKITYEEAIDKAIEEEKLVMILVRFSNDPFASAME-SIYKNEEVADYYNTHFINVDKEIDIRNPEDMIFLKDFEIESSPSYIYLNAEYEQIIAIYNGRTDRSSDFLEQA-KVAVQGICYGLEKIMEDYPN 408
            +AQGI F K T+EE + +A +E+K+V +    S       ME  ++  ++V DYYN +FI    ++D    E     K +++ + P+++YLN E  Q++  ++G  D + +FLE+A +V++     G EKI   Y +
Sbjct:   19 WAQGIVFQKGTWEEILTQAKQEDKVVFVDFYTSWCGPCKMMEREVFSQKKVGDYYNQNFICC--KVDGEKGEGPDLAKKYKVTAFPTFLYLNGE-GQVVYRFSGARD-AKEFLEEAERVSLCAQYDGWEKIQSAYQS 151          
BLAST of mRNA_M-pyrifera_M_contig114777.3067.1 vs. uniprot
Match: A0A4Q1JKR3_9BACT (Thioredoxin n=2 Tax=Marinifilaceae TaxID=1573805 RepID=A0A4Q1JKR3_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 4.220e-7
Identity = 37/123 (30.08%), Postives = 68/123 (55.28%), Query Frame = 1
Query:    4 FAQGIDFNKITYEEAIDKAIEEEKLV-MILVRFSNDPFASAMESIYKNEEVADYYNTHFINVDKEIDIRNPEDMIFLKDFEIESSPSYIYLNAEYEQIIAIYNGRTDRSSDFLEQAKVAVQGI 369
            F+QGI F K T++EA+ KA +E K+V M        P     + I+  EEV  +YN HFIN+  ++D+ + E    LK +++++ P+ ++L++E      +  G   ++   ++ A +A+  I
Sbjct:   18 FSQGIKFEKATFDEALAKAKQENKMVFMDCYTTWCGPCKRLAKDIFTLEEVGRFYNAHFINL--KMDMESDEGKSLLKKYQVKAFPTLLWLDSEGRMQHRVVGG--GKAKKIIDAAVLAMDSI 136          
BLAST of mRNA_M-pyrifera_M_contig114777.3067.1 vs. uniprot
Match: A0A8J6QAZ7_9FLAO (Thioredoxin family protein n=1 Tax=Aestuariibaculum marinum TaxID=2683592 RepID=A0A8J6QAZ7_9FLAO)

HSP 1 Score: 57.0 bits (136), Expect = 7.980e-7
Identity = 42/135 (31.11%), Postives = 67/135 (49.63%), Query Frame = 1
Query:    7 AQGIDFNKITYEEAIDKAIEEEKLVMI-LVRFSNDPFASAMESIYKNEEVADYYNTHFINVDKEIDIRNPEDMIFLKDFEIESSPSYIYLNAEYEQIIAIYNGRTDRSSDFLEQAKVAVQGICYGLEKIMEDYPN 408
            AQGI+F  I+ EEA++KA  E+KLV I        P  +  ++++   EV   YN  +IN+  + +    E +   K + + S P+YIYLNA    +      R   +   L +  VA +   + LEK+   +PN
Sbjct:   21 AQGIEFQHISLEEALEKAKAEDKLVFIDFYTTWCAPCKAMAKNVFTLPEVGAVYNKEYINIKLDAE---KEGLKSAKKYLVNSYPTYIYLNANGNIVYKETGMRLANNFIQLGRDAVASENSQFSLEKLRAKFPN 152          
BLAST of mRNA_M-pyrifera_M_contig114777.3067.1 vs. uniprot
Match: UPI000825C2D9 (thioredoxin family protein n=1 Tax=Formosa haliotis TaxID=1555194 RepID=UPI000825C2D9)

HSP 1 Score: 56.2 bits (134), Expect = 1.510e-6
Identity = 42/139 (30.22%), Postives = 67/139 (48.20%), Query Frame = 1
Query:    4 FAQGIDFNKITYEEAIDKAIEEEKLVMI-LVRFSNDPFASAMESIYKNEEVADYYNTHFINVDKEIDIRNPEDMIFLKDFEIESSPSYIYLNAEYEQIIAIYNGRTDRSSD-FLEQAKVAVQGIC--YGLEKIMEDYPN 408
            +AQGI F+ IT+EEA+ KA +E KLV I        P       ++    V D YN +FIN+  + +    E     K + + + P++++L+ +   ++        R  D F+  A  AV  +   Y LE + E YPN
Sbjct:   19 YAQGIQFDHITFEEALQKAKQENKLVFIDFHTVWCGPCKKMARDVFPLASVGDVYNKNFINLKLDAE---KEGKAVAKKYNVTNYPTFLFLDTDGNVLL---KDSAYRPEDLFIASANKAVASLTSEYSLENLKEAYPN 151          
BLAST of mRNA_M-pyrifera_M_contig114777.3067.1 vs. uniprot
Match: A0A1M7Z3F1_9BACT (Thioredoxin n=2 Tax=Algoriphagus zhangzhouensis TaxID=1073327 RepID=A0A1M7Z3F1_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 2.050e-6
Identity = 32/99 (32.32%), Postives = 56/99 (56.57%), Query Frame = 1
Query:    1 NFAQGIDFNKITYEEAIDKAIEEEKLVMI-LVRFSNDPFASAMESIYKNEEVADYYNTHFINVDKEIDIRNPEDMIFLKDFEIESSPSYIYLNAEYEQI 294
            + AQG+DF  I+YEEA++KA  E+KL+ +        P     + ++   EV + YN  FIN+  ++D    E  +  + FE+ S P+++++N + E I
Sbjct:   20 SLAQGVDFLPISYEEALEKAQAEDKLLFVDFYTVWCSPCKQMEKKVFPEAEVGELYNKEFINI--KLDAER-EGKVAAEKFEVNSYPTFLFINGDGEMI 115          
BLAST of mRNA_M-pyrifera_M_contig114777.3067.1 vs. uniprot
Match: UPI0012AE3B9E (thioredoxin domain-containing protein n=1 Tax=Ancylomarina sp. 16SWW S1-10-2 TaxID=2499681 RepID=UPI0012AE3B9E)

HSP 1 Score: 55.5 bits (132), Expect = 2.730e-6
Identity = 35/107 (32.71%), Postives = 64/107 (59.81%), Query Frame = 1
Query:    4 FAQGIDFNKITYEEAIDKAIEEEKLV-MILVRFSNDPFASAMESIYKNEEVADYYNTHFINVDKEIDIRNPEDMIFLKDFEIESSPSYIYLNAEYEQIIAIYNGRTD 321
            F+QGIDF  ++++EA+ KA +E K+V M        P  +  ++++  +EV DY+N++F+ +  ++D+   E    LK +EI   P+ +YL A+  ++I+   G TD
Sbjct:   18 FSQGIDFQHVSFDEALAKAKKENKMVFMDCYTTWCGPCKALAKNVFPQKEVGDYFNSNFVCI--KMDMEKGEGPALLKKYEIIGFPTLLYLAAD-GKVISKRIGGTD 121          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114777.3067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N3I0Z2_9BACT8.070e-833.91Thioredoxin domain-containing protein n=1 Tax=Labi... [more]
A0A8J6Q5F9_9FLAO9.340e-833.09Thioredoxin family protein n=1 Tax=Aestuariibaculu... [more]
UPI001F0A27871.250e-731.39DUF255 domain-containing protein n=1 Tax=Aestuarii... [more]
A0A2G6LQW4_9FLAO1.660e-735.11Disulfide isomerase n=1 Tax=Flavobacteriales bacte... [more]
UPI0013799A7A2.360e-732.12thioredoxin family protein n=1 Tax=Odoribacter sp.... [more]
A0A4Q1JKR3_9BACT4.220e-730.08Thioredoxin n=2 Tax=Marinifilaceae TaxID=1573805 R... [more]
A0A8J6QAZ7_9FLAO7.980e-731.11Thioredoxin family protein n=1 Tax=Aestuariibaculu... [more]
UPI000825C2D91.510e-630.22thioredoxin family protein n=1 Tax=Formosa halioti... [more]
A0A1M7Z3F1_9BACT2.050e-632.32Thioredoxin n=2 Tax=Algoriphagus zhangzhouensis Ta... [more]
UPI0012AE3B9E2.730e-632.71thioredoxin domain-containing protein n=1 Tax=Ancy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114777contigM-pyrifera_M_contig114777:1..408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.6
Seed ortholog evalue3.2e-07
Seed eggNOG ortholog1121129.KB903359_gene2114
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function, DUF255
EggNOG OGs22Z96@171551,2FRG5@200643,4NHPX@976,COG4232@1,COG4232@2
COG Functional cat.CO
Best tax levelPorphyromonadaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size408
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815663.4617352-CDS-M-pyrifera_M_contig114777:0..4081622815663.4617352-CDS-M-pyrifera_M_contig114777:0..408Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114777 1..408 +
1692277510.8485415-CDS-M-pyrifera_M_contig114777:0..4081692277510.8485415-CDS-M-pyrifera_M_contig114777:0..408Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114777 1..408 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114777.3067.1prot_M-pyrifera_M_contig114777.3067.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114777 1..408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114777.3067.1

>prot_M-pyrifera_M_contig114777.3067.1 ID=prot_M-pyrifera_M_contig114777.3067.1|Name=mRNA_M-pyrifera_M_contig114777.3067.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=136bp
NFAQGIDFNKITYEEAIDKAIEEEKLVMILVRFSNDPFASAMESIYKNEE
VADYYNTHFINVDKEIDIRNPEDMIFLKDFEIESSPSYIYLNAEYEQIIA
IYNGRTDRSSDFLEQAKVAVQGICYGLEKIMEDYPN
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mRNA from alignment at M-pyrifera_M_contig114777:1..408+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114777.3067.1 ID=mRNA_M-pyrifera_M_contig114777.3067.1|Name=mRNA_M-pyrifera_M_contig114777.3067.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig114777:1..408+ (Macrocystis pyrifera P11B4 male)
AATTTTGCACAAGGCATAGACTTTAACAAAATTACATATGAAGAGGCTAT TGATAAAGCAATCGAAGAAGAAAAGCTGGTTATGATTTTAGTACGCTTTT CAAACGATCCATTTGCTTCCGCAATGGAAAGTATTTATAAAAACGAGGAA GTAGCAGATTATTACAACACTCATTTTATTAATGTGGATAAAGAAATAGA TATTCGAAATCCCGAAGACATGATTTTTTTAAAAGACTTTGAAATAGAAT CTTCACCAAGCTATATCTACCTGAATGCAGAATACGAGCAAATTATAGCA ATTTATAATGGAAGAACGGACCGATCTTCTGATTTTTTAGAACAAGCCAA AGTAGCAGTACAAGGAATTTGCTATGGTCTTGAAAAAATAATGGAAGACT ATCCCAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114777:1..408+

>mRNA_M-pyrifera_M_contig114777.3067.1 ID=mRNA_M-pyrifera_M_contig114777.3067.1|Name=mRNA_M-pyrifera_M_contig114777.3067.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig114777:1..408+ (Macrocystis pyrifera P11B4 male)
AATTTTGCACAAGGCATAGACTTTAACAAAATTACATATGAAGAGGCTAT
TGATAAAGCAATCGAAGAAGAAAAGCTGGTTATGATTTTAGTACGCTTTT
CAAACGATCCATTTGCTTCCGCAATGGAAAGTATTTATAAAAACGAGGAA
GTAGCAGATTATTACAACACTCATTTTATTAATGTGGATAAAGAAATAGA
TATTCGAAATCCCGAAGACATGATTTTTTTAAAAGACTTTGAAATAGAAT
CTTCACCAAGCTATATCTACCTGAATGCAGAATACGAGCAAATTATAGCA
ATTTATAATGGAAGAACGGACCGATCTTCTGATTTTTTAGAACAAGCCAA
AGTAGCAGTACAAGGAATTTGCTATGGTCTTGAAAAAATAATGGAAGACT
ATCCCAATAATTTTGCACAAGGCATAGACTTTAACAAAATTACATATGAA
GAGGCTATTGATAAAGCAATCGAAGAAGAAAAGCTGGTTATGATTTTAGT
ACGCTTTTCAAACGATCCATTTGCTTCCGCAATGGAAAGTATTTATAAAA
ACGAGGAAGTAGCAGATTATTACAACACTCATTTTATTAATGTGGATAAA
GAAATAGATATTCGAAATCCCGAAGACATGATTTTTTTAAAAGACTTTGA
AATAGAATCTTCACCAAGCTATATCTACCTGAATGCAGAATACGAGCAAA
TTATAGCAATTTATAATGGAAGAACGGACCGATCTTCTGATTTTTTAGAA
CAAGCCAAAGTAGCAGTACAAGGAATTTGCTATGGTCTTGAAAAAATAAT
GGAAGACTATCCCAAT
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