mRNA_M-pyrifera_M_contig113983.2898.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113983.2898.1
Unique NamemRNA_M-pyrifera_M_contig113983.2898.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113983.2898.1 vs. uniprot
Match: A0A2D8YQY2_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A2D8YQY2_9HYPH)

HSP 1 Score: 99.8 bits (247), Expect = 1.740e-25
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    1 SKADVIGIRLSKADLADFLKTHATTLYEGIPGHFMKEYAAVPTRMLADTETLQAWFRKSHCYASGLKPKKTTR 219
            S+A+VIG+RL KADLA FL+   TTL+EG+PGHFMKEY AVP  +LA  +TL+AWF +S+ +AS LKPK T R
Sbjct:   47 SQANVIGLRLGKADLAKFLEAFETTLFEGVPGHFMKEYGAVPHALLAQPDTLRAWFARSYAHASALKPKATKR 119
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BLAST of mRNA_M-pyrifera_M_contig113983.2898.1 vs. uniprot
Match: G4RG66_PELHB (Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain DSM 22347 / JCM 15775 / CGMCC 1.7692 / B2) TaxID=1082931 RepID=G4RG66_PELHB)

HSP 1 Score: 97.8 bits (242), Expect = 9.990e-25
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:    1 SKADVIGIRLSKADLADFLKTHATTLYEGIPGHFMKEYAAVPTRMLADTETLQAWFRKSHCYASGLKPKKTTR 219
            SKA+VIG+RL K DLA+FL+   T  +EG+PGHFMKEYAAVP  +LA  +TL+AWF +S+ +AS LKPK T R
Sbjct:   47 SKANVIGLRLGKVDLAEFLEAFETISFEGVPGHFMKEYAAVPYTLLAQPDTLRAWFARSYAHASALKPKATKR 119
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BLAST of mRNA_M-pyrifera_M_contig113983.2898.1 vs. uniprot
Match: UPI0004149A91 (hypothetical protein n=1 Tax=Cucumibacter marinus TaxID=1121252 RepID=UPI0004149A91)

HSP 1 Score: 92.4 bits (228), Expect = 1.380e-22
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:    1 SKADVIGIRLSKADLADFLKTHATTLYEGIPGHFMKEYAAVPTRMLADTETLQAWFRKSHCYASGLKPKKTTR 219
            SK D IGIRLSKADLA+FL+T+   L+EG PG   KEYAA+P  +  D +TLQAWF++SH +A+ LKPK T R
Sbjct:   48 SKLDRIGIRLSKADLAEFLETYDAGLHEGYPGFVQKEYAAIPESLYDDIDTLQAWFQRSHDFAAALKPKPTRR 120
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BLAST of mRNA_M-pyrifera_M_contig113983.2898.1 vs. uniprot
Match: A0A1W2G8I1_9BACT (Uncharacterized protein n=1 Tax=Reichenbachiella faecimaris TaxID=692418 RepID=A0A1W2G8I1_9BACT)

HSP 1 Score: 47.4 bits (111), Expect = 4.940e-5
Identity = 25/69 (36.23%), Postives = 41/69 (59.42%), Query Frame = 1 
Query:    1 SKADVIGIRLSKADLADFLKTHATTLYEGIPGHFMKEYAAVPTRMLADTETLQAWFRKSHCYASGLKPK 207
            +KA  +GIRLSK D  +F+KT+ ++L++   G  M+ Y  +P  ML +T     + +KS+ +   L PK
Sbjct:   41 NKAGELGIRLSKEDGEEFIKTYQSSLFKSY-GAVMRGYVVLPDSMLDNTALAAKFLQKSYEFVLSLPPK 108
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113983.2898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2D8YQY2_9HYPH1.740e-2563.01Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
G4RG66_PELHB9.990e-2561.64Uncharacterized protein n=1 Tax=Pelagibacterium ha... [more]
UPI0004149A911.380e-2260.27hypothetical protein n=1 Tax=Cucumibacter marinus ... [more]
A0A1W2G8I1_9BACT4.940e-536.23Uncharacterized protein n=1 Tax=Reichenbachiella f... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113983contigM-pyrifera_M_contig113983:2..223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score98.2
Seed ortholog evalue1.7e-18
Seed eggNOG ortholog1082931.KKY_3049
Hectar predicted targeting categoryother localisation
EggNOG OGs2EE2W@1,337XH@2
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815654.0033405-CDS-M-pyrifera_M_contig113983:1..2231622815654.0033405-CDS-M-pyrifera_M_contig113983:1..223Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113983 2..223 +
1692277506.595686-CDS-M-pyrifera_M_contig113983:1..2231692277506.595686-CDS-M-pyrifera_M_contig113983:1..223Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113983 2..223 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113983.2898.1prot_M-pyrifera_M_contig113983.2898.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113983 2..223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113983.2898.1

>prot_M-pyrifera_M_contig113983.2898.1 ID=prot_M-pyrifera_M_contig113983.2898.1|Name=mRNA_M-pyrifera_M_contig113983.2898.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
SKADVIGIRLSKADLADFLKTHATTLYEGIPGHFMKEYAAVPTRMLADTE
TLQAWFRKSHCYASGLKPKKTTR*
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mRNA from alignment at M-pyrifera_M_contig113983:2..223+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113983.2898.1 ID=mRNA_M-pyrifera_M_contig113983.2898.1|Name=mRNA_M-pyrifera_M_contig113983.2898.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig113983:2..223+ (Macrocystis pyrifera P11B4 male)
TCCAAGGCCGATGTCATTGGCATCCGGCTTTCAAAAGCGGATTTGGCAGA
TTTTCTAAAGACGCATGCCACAACCCTTTATGAGGGCATTCCCGGACATT
TCATGAAGGAATATGCAGCCGTGCCGACACGGATGCTTGCGGACACGGAG
ACCCTGCAGGCCTGGTTTCGAAAAAGTCACTGTTATGCCAGCGGATTGAA
GCCGAAAAAGACAACACGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113983:2..223+

>mRNA_M-pyrifera_M_contig113983.2898.1 ID=mRNA_M-pyrifera_M_contig113983.2898.1|Name=mRNA_M-pyrifera_M_contig113983.2898.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig113983:2..223+ (Macrocystis pyrifera P11B4 male)
TCCAAGGCCGATGTCATTGGCATCCGGCTTTCAAAAGCGGATTTGGCAGA
TTTTCTAAAGACGCATGCCACAACCCTTTATGAGGGCATTCCCGGACATT
TCATGAAGGAATATGCAGCCGTGCCGACACGGATGCTTGCGGACACGGAG
ACCCTGCAGGCCTGGTTTCGAAAAAGTCACTGTTATGCCAGCGGATTGAA
GCCGAAAAAGACAACACGCTGATCCAAGGCCGATGTCATTGGCATCCGGC
TTTCAAAAGCGGATTTGGCAGATTTTCTAAAGACGCATGCCACAACCCTT
TATGAGGGCATTCCCGGACATTTCATGAAGGAATATGCAGCCGTGCCGAC
ACGGATGCTTGCGGACACGGAGACCCTGCAGGCCTGGTTTCGAAAAAGTC
ACTGTTATGCCAGCGGATTGAAGCCGAAAAAGACAACACGCTGA
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