mRNA_M-pyrifera_M_contig113849.2873.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113849.2873.1
Unique NamemRNA_M-pyrifera_M_contig113849.2873.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113849.2873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113849contigM-pyrifera_M_contig113849:80..571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size366
Cds size354
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113849.2873.1prot_M-pyrifera_M_contig113849.2873.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113849 92..571 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815652.8074589-UTR-M-pyrifera_M_contig113849:79..911622815652.8074589-UTR-M-pyrifera_M_contig113849:79..91Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig113849 80..91 +
1692277506.09252-UTR-M-pyrifera_M_contig113849:79..911692277506.09252-UTR-M-pyrifera_M_contig113849:79..91Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig113849 80..91 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815652.8212345-CDS-M-pyrifera_M_contig113849:91..3251622815652.8212345-CDS-M-pyrifera_M_contig113849:91..325Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113849 92..325 +
1692277506.105828-CDS-M-pyrifera_M_contig113849:91..3251692277506.105828-CDS-M-pyrifera_M_contig113849:91..325Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113849 92..325 +
1622815652.8321996-CDS-M-pyrifera_M_contig113849:451..5711622815652.8321996-CDS-M-pyrifera_M_contig113849:451..571Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113849 452..571 +
1692277506.1142902-CDS-M-pyrifera_M_contig113849:451..5711692277506.1142902-CDS-M-pyrifera_M_contig113849:451..571Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113849 452..571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113849.2873.1

>prot_M-pyrifera_M_contig113849.2873.1 ID=prot_M-pyrifera_M_contig113849.2873.1|Name=mRNA_M-pyrifera_M_contig113849.2873.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
MWHTLGSSFKPYKHTGKFWDDVLLPFRGLGNALFGAYEVVALPFMATYMM
VKHFPEIFNRSVIKWNMSLTSTLGHMSHFQAVGLVLLGLSKALATPLICG
IRIPLRGFLALFQGKPCI
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mRNA from alignment at M-pyrifera_M_contig113849:80..571+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113849.2873.1 ID=mRNA_M-pyrifera_M_contig113849.2873.1|Name=mRNA_M-pyrifera_M_contig113849.2873.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig113849:80..571+ (Macrocystis pyrifera P11B4 male)
CCTTATCGGGCTATGTGGCATACACTGGGCAGTTCGTTTAAGCCCTACAA
ACATACGGGCAAGTTTTGGGATGATGTATTACTCCCATTTCGTGGGTTGG
GAAATGCGCTGTTCGGCGCTTATGAAGTGGTTGCTTTGCCTTTCATGGCT
ACTTATATGATGGTTAAACATTTCCCGGAGATTTTTAATAGAAGCGTTAT
AAAATGGAATATGTCATTAACATCTACGTTGGGTCATATGAGTCATGTTC
CAAATGATGAAGGTGGTGTTTCGCCCAAGACTGCTATGTCAAAGGTGGAT
ATATCCGTAGGGTGGTTGTTGGCAATACCTAGTATGCCAGCGCTTTGGAT
AAAATCTGTTGCGTTAAAAGAGTTCCAGGCCGTAGGTCTTGTGCTCCTTG
GTTTAAGTAAAGCTCTTGCTACCCCGTTAATTTGTGGTATTCGCATACCG
TTGCGCGGTTTCTTGGCTCTATTTCAAGGGAAGCCATGTATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113849:80..571+

>mRNA_M-pyrifera_M_contig113849.2873.1 ID=mRNA_M-pyrifera_M_contig113849.2873.1|Name=mRNA_M-pyrifera_M_contig113849.2873.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig113849:80..571+ (Macrocystis pyrifera P11B4 male)
ATGTGGCATACACTGGGCAGTTCGTTTAAGCCCTACAAACATACGGGCAA
GTTTTGGGATGATGTATTACTCCCATTTCGTGGGTTGGGAAATGCGCTGT
TCGGCGCTTATGAAGTGGTTGCTTTGCCTTTCATGGCTACTTATATGATG
GTTAAACATTTCCCGGAGATTTTTAATAGAAGCGTTATAAAATGGAATAT
GTCATTAACATCTACGTTGGGTCATATGAGTCATATGTGGCATACACTGG
GCAGTTCGTTTAAGCCCTACAAACATACGGGCAAGTTTTGGGATGATGTA
TTACTCCCATTTCGTGGGTTGGGAAATGCGCTGTTCGGCGCTTATGAAGT
GGTTGCTTTGCCTTTCATGGCTACTTATATGATGGTTAAACATTTCCCGG
AGATTTTTAATAGAAGCGTTATAAAATGGAATATGTCATTAACATCTACG
TTGGGTCATATGAGTCATTTCCAGGCCGTAGGTCTTGTGCTCCTTGGTTT
AAGTAAAGCTCTTGCTACCCCGTTAATTTGTGGTATTCGCATACCGTTGC
GCGGTTTCTTGGCTCTATTTCAAGGGAAGCCATGTATTTTCCAGGCCGTA
GGTCTTGTGCTCCTTGGTTTAAGTAAAGCTCTTGCTACCCCGTTAATTTG
TGGTATTCGCATACCGTTGCGCGGTTTCTTGGCTCTATTTCAAGGGAAGC
CATGTATT
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