mRNA_M-pyrifera_M_contig113718.2856.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113718.2856.1
Unique NamemRNA_M-pyrifera_M_contig113718.2856.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113718.2856.1 vs. uniprot
Match: A0A5C5VSP5_9PLAN (Uncharacterized protein n=1 Tax=Thalassoglobus neptunius TaxID=1938619 RepID=A0A5C5VSP5_9PLAN)

HSP 1 Score: 55.1 bits (131), Expect = 8.860e-6
Identity = 45/165 (27.27%), Postives = 70/165 (42.42%), Query Frame = 1 
Query:    1 VSQRLSYDVQFGRLSEVRLKIPPFLYDQLTPDVMDASFTFLLDGEVPLTTDWTGPEVTVTLPNARLGKFDIVIDDYLPTPEQGSRPATLDVPIITSLDETFSSVRLIVPDQPTLSVTVDHDDWTRLSTVADGMQWIT---GQPVTDVTIALDRSLTKSPQRLKID 486
            V QR++ DVQ+G+L  V L +P  L D L P+        +  G   L    +   +T  LP A  G  +I +D   P        A +D+PI+   D  F     +V    ++ V  +   WT L T   G  W++      ++ V +   R L  S Q+  +D
Sbjct:  691 VHQRITLDVQYGKLDRVELLLPQELRD-LIPEFAIQESLEIRSGNEFLPVFLSTESLTALLPKATSGLIEIDVDYGFPV-TSADELAEMDLPILGLRDYPFDRAECLVTPFESIQVREEVAGWTALRTSPRGPLWVSPGIDGAISSVPLTFGRELADSTQQYIVD 853
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113718.2856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5C5VSP5_9PLAN8.860e-627.27Uncharacterized protein n=1 Tax=Thalassoglobus nep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113718contigM-pyrifera_M_contig113718:4..489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size486
Cds size486
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815651.8510199-CDS-M-pyrifera_M_contig113718:3..4891622815651.8510199-CDS-M-pyrifera_M_contig113718:3..489Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113718 4..489 -
1692277505.7290425-CDS-M-pyrifera_M_contig113718:3..4891692277505.7290425-CDS-M-pyrifera_M_contig113718:3..489Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113718 4..489 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113718.2856.1prot_M-pyrifera_M_contig113718.2856.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113718 4..489 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113718.2856.1

>prot_M-pyrifera_M_contig113718.2856.1 ID=prot_M-pyrifera_M_contig113718.2856.1|Name=mRNA_M-pyrifera_M_contig113718.2856.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=162bp
VSQRLSYDVQFGRLSEVRLKIPPFLYDQLTPDVMDASFTFLLDGEVPLTT
DWTGPEVTVTLPNARLGKFDIVIDDYLPTPEQGSRPATLDVPIITSLDET
FSSVRLIVPDQPTLSVTVDHDDWTRLSTVADGMQWITGQPVTDVTIALDR
SLTKSPQRLKID
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mRNA from alignment at M-pyrifera_M_contig113718:4..489-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113718.2856.1 ID=mRNA_M-pyrifera_M_contig113718.2856.1|Name=mRNA_M-pyrifera_M_contig113718.2856.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig113718:4..489- (Macrocystis pyrifera P11B4 male)
GTTTCTCAACGTCTTTCTTATGACGTTCAATTTGGTCGGCTCTCAGAAGT
TCGCCTGAAGATCCCCCCTTTCCTTTACGACCAGCTGACGCCCGACGTCA
TGGATGCCTCCTTCACGTTTCTGCTCGATGGTGAAGTCCCATTGACAACC
GACTGGACTGGTCCAGAAGTGACAGTCACTTTGCCGAATGCCCGATTGGG
GAAATTTGACATTGTCATCGATGACTACTTGCCAACTCCTGAACAGGGAT
CGCGGCCGGCGACACTCGACGTTCCGATCATCACGAGTTTGGATGAGACC
TTCTCCTCAGTGCGACTGATTGTGCCCGATCAACCGACGCTTTCCGTCAC
GGTCGATCACGATGACTGGACGAGATTAAGCACCGTCGCAGATGGGATGC
AGTGGATCACAGGTCAGCCCGTCACAGATGTGACAATCGCATTGGACCGG
TCCCTCACCAAGAGTCCACAGAGGCTCAAGATCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113718:4..489-

>mRNA_M-pyrifera_M_contig113718.2856.1 ID=mRNA_M-pyrifera_M_contig113718.2856.1|Name=mRNA_M-pyrifera_M_contig113718.2856.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=972bp|location=Sequence derived from alignment at M-pyrifera_M_contig113718:4..489- (Macrocystis pyrifera P11B4 male)
GTTTCTCAACGTCTTTCTTATGACGTTCAATTTGGTCGGCTCTCAGAAGT
TCGCCTGAAGATCCCCCCTTTCCTTTACGACCAGCTGACGCCCGACGTCA
TGGATGCCTCCTTCACGTTTCTGCTCGATGGTGAAGTCCCATTGACAACC
GACTGGACTGGTCCAGAAGTGACAGTCACTTTGCCGAATGCCCGATTGGG
GAAATTTGACATTGTCATCGATGACTACTTGCCAACTCCTGAACAGGGAT
CGCGGCCGGCGACACTCGACGTTCCGATCATCACGAGTTTGGATGAGACC
TTCTCCTCAGTGCGACTGATTGTGCCCGATCAACCGACGCTTTCCGTCAC
GGTCGATCACGATGACTGGACGAGATTAAGCACCGTCGCAGATGGGATGC
AGTGGATCACAGGTCAGCCCGTCACAGATGTGACAATCGCATTGGACCGG
TCCCTCACCAAGAGTCCACAGAGGCTCAAGATCGACGTTTCTCAACGTCT
TTCTTATGACGTTCAATTTGGTCGGCTCTCAGAAGTTCGCCTGAAGATCC
CCCCTTTCCTTTACGACCAGCTGACGCCCGACGTCATGGATGCCTCCTTC
ACGTTTCTGCTCGATGGTGAAGTCCCATTGACAACCGACTGGACTGGTCC
AGAAGTGACAGTCACTTTGCCGAATGCCCGATTGGGGAAATTTGACATTG
TCATCGATGACTACTTGCCAACTCCTGAACAGGGATCGCGGCCGGCGACA
CTCGACGTTCCGATCATCACGAGTTTGGATGAGACCTTCTCCTCAGTGCG
ACTGATTGTGCCCGATCAACCGACGCTTTCCGTCACGGTCGATCACGATG
ACTGGACGAGATTAAGCACCGTCGCAGATGGGATGCAGTGGATCACAGGT
CAGCCCGTCACAGATGTGACAATCGCATTGGACCGGTCCCTCACCAAGAG
TCCACAGAGGCTCAAGATCGAC
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