mRNA_M-pyrifera_M_contig113509.2817.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113509.2817.1
Unique NamemRNA_M-pyrifera_M_contig113509.2817.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113509.2817.1 vs. uniprot
Match: D8REC3_SELML (Mannosyltransferase n=8 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8REC3_SELML)

HSP 1 Score: 150 bits (378), Expect = 9.680e-41
Identity = 70/120 (58.33%), Postives = 88/120 (73.33%), Query Frame = 1 
Query:    1 CYSTTDVGKGMSGAVDSFFWQHWIWPEGSVFWYNAVLGKSVNWGTSPFHWYCSSALPRALLAALPLAAVGLAMGWRRLWRLAIPVAAFVAIYSFQPHKELRFVFYALPMANLAAAYGVSR 360
            C     V  G++ AVDS  W+ W+WPE  VFW+N+VL +S  WG SPFHWY SSALPRA+LAA PL+ VGLA+  RR+ RLA+PV  FV +YS  PHKELRF+ +A+PM NLAAA  ++R
Sbjct:  172 CIPAAIVSAGLTFAVDSILWRRWVWPEWEVFWFNSVLNRSSEWGVSPFHWYFSSALPRAMLAAYPLSFVGLALD-RRIRRLALPVYGFVILYSKLPHKELRFILFAVPMLNLAAAAAIAR 290
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BLAST of mRNA_M-pyrifera_M_contig113509.2817.1 vs. uniprot
Match: UPI000D1D04FB (dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase-like isoform X1 n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1D04FB)

HSP 1 Score: 148 bits (374), Expect = 4.590e-40
Identity = 69/120 (57.50%), Postives = 87/120 (72.50%), Query Frame = 1 
Query:    1 CYSTTDVGKGMSGAVDSFFWQHWIWPEGSVFWYNAVLGKSVNWGTSPFHWYCSSALPRALLAALPLAAVGLAMGWRRLWRLAIPVAAFVAIYSFQPHKELRFVFYALPMANLAAAYGVSR 360
            C     V  G++  VDS  W+ W+WPE  VFW+N+VL +S  WG SPFHWY SSALPRA+LAA PL+ VGLA+  RR+ RLA+PV  FV +YS  PHKELRF+ +A+PM NLAAA  ++R
Sbjct:  224 CIPAAIVSAGLTFVVDSIMWRRWVWPEWEVFWFNSVLNRSSEWGVSPFHWYFSSALPRAMLAAYPLSFVGLALD-RRIRRLALPVYGFVILYSKLPHKELRFILFAVPMLNLAAAAAIAR 342
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BLAST of mRNA_M-pyrifera_M_contig113509.2817.1 vs. uniprot
Match: UPI001455A375 (dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455A375)

HSP 1 Score: 140 bits (353), Expect = 7.620e-37
Identity = 68/124 (54.84%), Postives = 83/124 (66.94%), Query Frame = 1 
Query:   13 TDVGKGMSGAV---------DSFFWQHWIWPEGSVFWYNAVLGKSVNWGTSPFHWYCSSALPRALLAALPLAAVGLAMGWRRLWRLAIPVAAFVAIYSFQPHKELRFVFYALPMANLAAAYGVS 357
            T +G G+ GAV         DSFFWQ+W+WPEG+V WYN VL KS NWGTSPF WY  SA+PRAL ++L L  +G  +  RR+WR  +P   FV ++SF PHKELRF+ Y  PM N AAA  VS
Sbjct:  256 TLIGWGIVGAVLSLGSTVLIDSFFWQYWLWPEGTVLWYNTVLNKSSNWGTSPFLWYFYSAIPRALASSLMLVPIGCFVD-RRIWRFLLPPIGFVFLFSFLPHKELRFIIYTFPMLNTAAAVAVS 378
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BLAST of mRNA_M-pyrifera_M_contig113509.2817.1 vs. uniprot
Match: A0A8B7XMP0_ACAPL (Mannosyltransferase n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XMP0_ACAPL)

HSP 1 Score: 140 bits (353), Expect = 7.860e-37
Identity = 64/113 (56.64%), Postives = 78/113 (69.03%), Query Frame = 1 
Query:   19 VGKGMSGAVDSFFWQHWIWPEGSVFWYNAVLGKSVNWGTSPFHWYCSSALPRALLAALPLAAVGLAMGWRRLWRLAIPVAAFVAIYSFQPHKELRFVFYALPMANLAAAYGVS 357
            +  G +   DSFFWQ+W+WPEG+V WYN VL KS NWGTSPF WY  SA+PRA+ A+L L  VG  +  RR+WR  +P   FV +YSF PHKELRF+ Y  PM N AAA  +S
Sbjct:  268 LSLGATVLTDSFFWQYWLWPEGAVLWYNTVLNKSSNWGTSPFMWYFYSAIPRAMAASLMLVPVGCFVD-RRVWRFLLPPMGFVFLYSFLPHKELRFIIYVFPMLNTAAAVAIS 379
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BLAST of mRNA_M-pyrifera_M_contig113509.2817.1 vs. uniprot
Match: A0A2P6NAG9_9EUKA (Mannosyltransferase n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NAG9_9EUKA)

HSP 1 Score: 139 bits (349), Expect = 2.130e-36
Identity = 58/114 (50.88%), Postives = 81/114 (71.05%), Query Frame = 1 
Query:   19 VGKGMSGAVDSFFWQHWIWPEGSVFWYNAVLGKSVNWGTSPFHWYCSSALPRALLAALPLAAVGLAMGWRRLWRLAIPVAAFVAIYSFQPHKELRFVFYALPMANLAAAYGVSR 360
            +   ++  +DS FW+ ++WPEG V WYN    +S  WGTSPFHWY S+ALPR+LLAALPL+   +   +R++W++  P   F+++YSF PHKELRFVFY +P+ NL AA G+ R
Sbjct:  248 ISLALTVIIDSIFWKRFLWPEGEVLWYNTYQNESHKWGTSPFHWYFSNALPRSLLAALPLSLYAICTDFRKVWKVLTPSVVFLSLYSFLPHKELRFVFYVIPIFNLTAAVGLHR 361
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BLAST of mRNA_M-pyrifera_M_contig113509.2817.1 vs. uniprot
Match: UPI0018D6E474 (LOW QUALITY PROTEIN: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D6E474)

HSP 1 Score: 139 bits (349), Expect = 2.810e-36
Identity = 61/113 (53.98%), Postives = 79/113 (69.91%), Query Frame = 1 
Query:   19 VGKGMSGAVDSFFWQHWIWPEGSVFWYNAVLGKSVNWGTSPFHWYCSSALPRALLAALPLAAVGLAMGWRRLWRLAIPVAAFVAIYSFQPHKELRFVFYALPMANLAAAYGVS 357
            +  G +  +DS+FWQ+W+WPEGSV WYN VL KS NWGTSPF WY  SA+PRA+ A+L L  +G  +  RR+WR  +P   FV +YSF PHKELRF+ Y  P+ N AAA  ++
Sbjct:  268 LSLGTTVVMDSYFWQYWLWPEGSVLWYNTVLNKSSNWGTSPFMWYFYSAIPRAMAASLMLVPIGCFLD-RRVWRFLLPPIGFVFLYSFLPHKELRFIIYVFPLLNTAAAVAIA 379
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BLAST of mRNA_M-pyrifera_M_contig113509.2817.1 vs. uniprot
Match: A0A1Y1HPD7_KLENI (Mannosyltransferase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HPD7_KLENI)

HSP 1 Score: 135 bits (339), Expect = 4.330e-35
Identity = 62/120 (51.67%), Postives = 80/120 (66.67%), Query Frame = 1 
Query:    1 CYSTTDVGKGMSGAVDSFFWQHWIWPEGSVFWYNAVLGKSVNWGTSPFHWYCSSALPRALLAALPLAAVGLAMGWRRLWRLAIPVAAFVAIYSFQPHKELRFVFYALPMANLAAAYGVSR 360
            C+        ++ AVDSFFW  W+WPEG V W+N VL KS +WG SP+HWY +SALPRALL A PLA +G  +  RR   L  P+  FV++YS+ PHKELRF+F A P+ N +AA  + R
Sbjct:  213 CFVAAVASLAVTVAVDSFFWGRWLWPEGEVLWFNTVLNKSADWGVSPWHWYFTSALPRALLGAYPLALLGAFLD-RRAGSLLWPILLFVSLYSYLPHKELRFIFPAFPIFNTSAAVAIER 331
[Close]
BLAST of mRNA_M-pyrifera_M_contig113509.2817.1 vs. uniprot
Match: UPI00064BCA3F (dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase n=1 Tax=Ochotona princeps TaxID=9978 RepID=UPI00064BCA3F)

HSP 1 Score: 133 bits (334), Expect = 1.200e-34
Identity = 62/108 (57.41%), Postives = 75/108 (69.44%), Query Frame = 1 
Query:   28 GMSGAVDSFFWQHWIWPEGSVFWYNAVLGKSVNWGTSPFHWYCSSALPRALLAALPLAAVGLAMGWRRLWRLAIPVAAFVAIYSFQPHKELRFVFYALPMANLAAAYG 351
            G++ AVDS+FWQHW+WPEG V WYN VL KS NWG +PF WY  SALPR L  +L L  +G+  G  RL  LA+P   FVA+YS  PHKELRF+ Y  P+ N+ AA G
Sbjct:  171 GLTVAVDSYFWQHWVWPEGEVLWYNTVLNKSSNWGVAPFLWYFYSALPRGLGCSLLLVPLGMVDGRARL--LALPSLGFVALYSLLPHKELRFILYTFPVLNIVAARG 276
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BLAST of mRNA_M-pyrifera_M_contig113509.2817.1 vs. uniprot
Match: A0A2G8L076_STIJA (Mannosyltransferase n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8L076_STIJA)

HSP 1 Score: 131 bits (329), Expect = 1.270e-34
Identity = 61/112 (54.46%), Postives = 76/112 (67.86%), Query Frame = 1 
Query:   19 VGKGMSGAVDSFFWQHWIWPEGSVFWYNAVLGKSVNWGTSPFHWYCSSALPRALLAALPLAAVGLAMGWRRLWRLAIPVAAFVAIYSFQPHKELRFVFYALPMANLAAAYGV 354
             G GM+  VDSFFWQ W+WPEG V WYN +L KS++WGTSPF WY  SALPRAL  +L L  +GL +  R+L    +P   F+ +YS  PHKELRF+ Y  PM N+A+A  V
Sbjct:   66 TGLGMTVLVDSFFWQRWLWPEGEVLWYNTILNKSIDWGTSPFFWYFYSALPRALGTSLLLIPLGLIVD-RKLRSFLLPPLGFMLLYSILPHKELRFIIYVFPMFNVASACAV 176
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BLAST of mRNA_M-pyrifera_M_contig113509.2817.1 vs. uniprot
Match: A0A3S3MNC2_9MAGN (Mannosyltransferase n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3MNC2_9MAGN)

HSP 1 Score: 133 bits (334), Expect = 2.960e-34
Identity = 62/120 (51.67%), Postives = 84/120 (70.00%), Query Frame = 1 
Query:    1 CYSTTDVGKGMSGAVDSFFWQHWIWPEGSVFWYNAVLGKSVNWGTSPFHWYCSSALPRALLAALPLAAVGLAMGWRRLWRLAIPVAAFVAIYSFQPHKELRFVFYALPMANLAAAYGVSR 360
            C ST  +G G+S  VD+  WQ  +WPE  V W+N+VL +S  WGT PFHWY +SALPR+LLAA PL  +G+ +  RR+ R  +PV +F+ +YS  PHKELRF+F ++P+ NL+AA   SR
Sbjct:  224 CISTALIGAGLSLLVDTVMWQRIVWPELEVLWFNSVLNRSSEWGTHPFHWYFTSALPRSLLAAYPLCLLGVLVD-RRILRFILPVFSFILLYSKLPHKELRFIFGSIPIFNLSAAIAASR 342
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113509.2817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8REC3_SELML9.680e-4158.33Mannosyltransferase n=8 Tax=Selaginella moellendor... [more]
UPI000D1D04FB4.590e-4057.50dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosy... [more]
UPI001455A3757.620e-3754.84dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosy... [more]
A0A8B7XMP0_ACAPL7.860e-3756.64Mannosyltransferase n=1 Tax=Acanthaster planci Tax... [more]
A0A2P6NAG9_9EUKA2.130e-3650.88Mannosyltransferase n=1 Tax=Planoprotostelium fung... [more]
UPI0018D6E4742.810e-3653.98LOW QUALITY PROTEIN: dol-P-Man:Man(7)GlcNAc(2)-PP-... [more]
A0A1Y1HPD7_KLENI4.330e-3551.67Mannosyltransferase n=1 Tax=Klebsormidium nitens T... [more]
UPI00064BCA3F1.200e-3457.41dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosy... [more]
A0A2G8L076_STIJA1.270e-3454.46Mannosyltransferase n=1 Tax=Stichopus japonicus Ta... [more]
A0A3S3MNC2_9MAGN2.960e-3451.67Mannosyltransferase n=1 Tax=Cinnamomum micranthum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113509contigM-pyrifera_M_contig113509:186..551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score143.7
Seed ortholog evalue5.3e-32
Seed eggNOG ortholog88036.EFJ29419
KEGG koko:K03847
KEGG ReactionR06260
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
KEGG ModuleM00055
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006464,GO:0006486,GO:0006487,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0012505,GO:0019538,GO:0019941,GO:0030163,GO:0030433,GO:0033554,GO:0034645,GO:0034976,GO:0036211,GO:0036503,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051603,GO:0051716,GO:0070085,GO:0071704,GO:1901135,GO:1901137,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698
EggNOG free text desc.dol-P-Man Man(7)GlcNAc(2)-PP-Dol
EggNOG OGs37M2I@33090,3G7EG@35493,KOG2516@1,KOG2516@2759
EC2.4.1.260
COG Functional cat.G
CAZyGT22
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Exons1
Model size366
Cds size336
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815649.9773178-UTR-M-pyrifera_M_contig113509:185..2151622815649.9773178-UTR-M-pyrifera_M_contig113509:185..215Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig113509 186..215 +
1692277504.826356-UTR-M-pyrifera_M_contig113509:185..2151692277504.826356-UTR-M-pyrifera_M_contig113509:185..215Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig113509 186..215 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815649.9926865-CDS-M-pyrifera_M_contig113509:215..5511622815649.9926865-CDS-M-pyrifera_M_contig113509:215..551Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113509 216..551 +
1692277504.8395612-CDS-M-pyrifera_M_contig113509:215..5511692277504.8395612-CDS-M-pyrifera_M_contig113509:215..551Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113509 216..551 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113509.2817.1prot_M-pyrifera_M_contig113509.2817.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113509 216..551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113509.2817.1

>prot_M-pyrifera_M_contig113509.2817.1 ID=prot_M-pyrifera_M_contig113509.2817.1|Name=mRNA_M-pyrifera_M_contig113509.2817.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
MSGAVDSFFWQHWIWPEGSVFWYNAVLGKSVNWGTSPFHWYCSSALPRAL
LAALPLAAVGLAMGWRRLWRLAIPVAAFVAIYSFQPHKELRFVFYALPMA
NLAAAYGVSRA*
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mRNA from alignment at M-pyrifera_M_contig113509:186..551+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113509.2817.1 ID=mRNA_M-pyrifera_M_contig113509.2817.1|Name=mRNA_M-pyrifera_M_contig113509.2817.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig113509:186..551+ (Macrocystis pyrifera P11B4 male)
TGTTACAGCACGACTGACGTTGGCAAAGGTATGAGTGGTGCAGTGGACTC
CTTTTTCTGGCAGCATTGGATCTGGCCAGAGGGGTCGGTGTTCTGGTACA
ACGCAGTACTGGGCAAGTCTGTGAACTGGGGCACATCTCCTTTCCACTGG
TACTGTTCTTCAGCGCTGCCTCGCGCACTCCTTGCGGCACTGCCGTTGGC
GGCCGTGGGCCTCGCGATGGGATGGAGGCGCCTGTGGCGTTTGGCCATCC
CAGTCGCAGCGTTCGTGGCCATCTACTCCTTCCAGCCACACAAGGAGTTA
CGTTTTGTCTTCTACGCCCTTCCTATGGCCAACTTGGCGGCGGCCTACGG
AGTTTCTCGCGCGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113509:186..551+

>mRNA_M-pyrifera_M_contig113509.2817.1 ID=mRNA_M-pyrifera_M_contig113509.2817.1|Name=mRNA_M-pyrifera_M_contig113509.2817.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig113509:186..551+ (Macrocystis pyrifera P11B4 male)
ATGAGTGGTGCAGTGGACTCCTTTTTCTGGCAGCATTGGATCTGGCCAGA
GGGGTCGGTGTTCTGGTACAACGCAGTACTGGGCAAGTCTGTGAACTGGG
GCACATCTCCTTTCCACTGGTACTGTTCTTCAGCGCTGCCTCGCGCACTC
CTTGCGGCACTGCCGTTGGCGGCCGTGGGCCTCGCGATGGGATGGAGGCG
CCTGTGGCGTTTGGCCATCCCAGTCGCAGCGTTCGTGGCCATCTACTCCT
TCCAGCCACACAAGGAGTTACGTTTTGTCTTCTACGCCCTTCCTATGGCC
AACTTGGCGGCGGCCTACGGAGTTTCTCGCGCGTAAATGAGTGGTGCAGT
GGACTCCTTTTTCTGGCAGCATTGGATCTGGCCAGAGGGGTCGGTGTTCT
GGTACAACGCAGTACTGGGCAAGTCTGTGAACTGGGGCACATCTCCTTTC
CACTGGTACTGTTCTTCAGCGCTGCCTCGCGCACTCCTTGCGGCACTGCC
GTTGGCGGCCGTGGGCCTCGCGATGGGATGGAGGCGCCTGTGGCGTTTGG
CCATCCCAGTCGCAGCGTTCGTGGCCATCTACTCCTTCCAGCCACACAAG
GAGTTACGTTTTGTCTTCTACGCCCTTCCTATGGCCAACTTGGCGGCGGC
CTACGGAGTTTCTCGCGCGTAA
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