mRNA_M-pyrifera_M_contig113491.2812.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig113491.2812.1 vs. uniprot
Match: A0A0Q1CYM9_9ACTN (Methyltransferase FkbM n=4 Tax=Frankia TaxID=1854 RepID=A0A0Q1CYM9_9ACTN) HSP 1 Score: 58.2 bits (139), Expect = 1.580e-7 Identity = 33/72 (45.83%), Postives = 41/72 (56.94%), Query Frame = 1
Query: 19 FPLPGSGSGLQQPVHVDDVVRVVCSERSVDVERWGEGCEIIDVAGPRVMSVRELISTAAAGVGLPVRIIPTP 234
PLPG G L QPVHVDD+ V S D G G DVAGPR +S+R++++ AAA G V +P P
Sbjct: 160 LPLPGGGRRLHQPVHVDDLAATVLRALSADAA-VGRG---YDVAGPRALSLRQIVAAAAAAEGRRVYCVPVP 227
BLAST of mRNA_M-pyrifera_M_contig113491.2812.1 vs. uniprot
Match: F8B3G4_9ACTN (NAD-dependent epimerase/dehydratase n=2 Tax=Frankia TaxID=1854 RepID=F8B3G4_9ACTN) HSP 1 Score: 56.2 bits (134), Expect = 5.990e-7 Identity = 36/114 (31.58%), Postives = 56/114 (49.12%), Query Frame = 1
Query: 1 LKHCARFPLPGSGSGLQQPVHVDDVVRVVCSERSVDVERWGEGC--EIIDVAGPRVMSVRELISTAAAGVGLPVRIIPTPVPVIRLLCGVMTKVLTDPLITPAQLRMLVEGMHF 336
L+ PLPG GS LQQPVHVDD+ V + ++V C + ++AGP ++ R +++ AAA VG V +P P+ + ++ P + Q+ L E F
Sbjct: 154 LRRSPLLPLPGGGSRLQQPVHVDDLAAAVLAAARLEV------CVGRVYNLAGPEALTFRTIVAEAAAAVGRRVVTVPLPLRATLTVARGYERLAARPRLRAEQIARLAEDKAF 261
BLAST of mRNA_M-pyrifera_M_contig113491.2812.1 vs. uniprot
Match: UPI001A2212F8 (NAD(P)H-binding protein n=1 Tax=Candidatus Dormibacteraeota bacterium TaxID=2052315 RepID=UPI001A2212F8) HSP 1 Score: 53.9 bits (128), Expect = 4.020e-6 Identity = 34/104 (32.69%), Postives = 55/104 (52.88%), Query Frame = 1
Query: 19 FPLPGSGSGLQQPVHVDDVVRVVCSERSVDVERWGEGCEIIDVAGPRVMSVRELISTAAAGVGLPVRI-IPTPVPVIRLLCGVMTKVLTDPLITPAQLRMLVEG 327
P+ G G L QP+ +DDVVR V + +ER I++ GP ++ ++I +G +R+ + PV + + +M +VL +P +TPAQLRML
Sbjct: 168 IPVAGDGGALFQPISIDDVVRCVV----LSLER-APALREIEIGGPEQLTYDQIIDVVHDAIGAGMRVKVHVPVAALMPVAALMDRVLPNPPVTPAQLRMLARN 266
BLAST of mRNA_M-pyrifera_M_contig113491.2812.1 vs. uniprot
Match: A0A7W1CAI5_9BACT (Complex I NDUFA9 subunit family protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7W1CAI5_9BACT) HSP 1 Score: 53.5 bits (127), Expect = 4.320e-6 Identity = 37/99 (37.37%), Postives = 55/99 (55.56%), Query Frame = 1
Query: 22 PLPGSGSGLQQPVHVDDVVRVVCSERSVDVERWGEGCEIIDVAGPRVMSVRELISTAAAGVGLPVRIIPTPVPVIRLLCGVMTKVLTDPLITPAQLRML 318
PLPG G QPV V DV C ++ +E E + D+AGP V+++RE++S A +G +P PV +RL G+ ++L P +T QL+ML
Sbjct: 105 PLPGGGRTRFQPVWVGDVAE--CFLQAARMEATPE--PVYDLAGPVVLTLREIVSVLARILGKRRATVPIPVAPLRLAAGLAERILPRPPLTRDQLKML 199
BLAST of mRNA_M-pyrifera_M_contig113491.2812.1 vs. uniprot
Match: A0A522QFV5_9BACT (NAD-dependent epimerase/dehydratase family protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A522QFV5_9BACT) HSP 1 Score: 52.0 bits (123), Expect = 1.960e-5 Identity = 34/106 (32.08%), Postives = 58/106 (54.72%), Query Frame = 1
Query: 1 LKHCARFPLPGSGSGLQQPVHVDDVVRVVCSERSVDVERWGEGCEIIDVAGPRVMSVRELISTAAAGVGLPVRIIPTPVPVIRLLCGVMTKVLTDPLITPAQLRML 318
++ PL G GS QPV+V DV R++ +E G +++ GP VM+++EL+ AA +G+ +P P+P+I +L + + L +P I+P +R L
Sbjct: 168 IRKAPVIPLIGDGSSKVQPVYVGDVARLIVDA----LESPGAADRAVEIGGPEVMTMKELMLRIAALMGVHKLALPGPLPLI-MLAAALVQWLPNPPISPDAVRFL 268
BLAST of mRNA_M-pyrifera_M_contig113491.2812.1 vs. uniprot
Match: A0A516H4W7_9PROT (NADH-ubiquinone oxidoreductase n=1 Tax=Ferrovibrio terrae TaxID=2594003 RepID=A0A516H4W7_9PROT) HSP 1 Score: 50.4 bits (119), Expect = 6.650e-5 Identity = 34/112 (30.36%), Postives = 55/112 (49.11%), Query Frame = 1
Query: 1 LKHCARFPLPGSGSGLQQPVHVDDVVRVVCSERSVDVERWGEGCEIIDVAGPRVMSVRELISTAAAGVGLPVRIIPTPVPVIRLLCGVMTKVLTDPLITPAQLRMLVEGMHF 336
++ PLP G+ L QP+H DDVV C E ++ +R E + VAGP+V+S R+L+ +G ++P P +++ + V P I ++R L E F
Sbjct: 150 IRKFGAVPLPAGGTALLQPIHTDDVVS--CIEAAL--QRDEAPGEPVIVAGPQVISYRDLVQAVGRAIGTSPTVLPVPGFALQIAAALTAAVPGIPTIRIDEVRRLGEDKTF 257
BLAST of mRNA_M-pyrifera_M_contig113491.2812.1 vs. uniprot
Match: UPI001BC53031 (NAD(P)H-binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=UPI001BC53031) HSP 1 Score: 50.4 bits (119), Expect = 6.650e-5 Identity = 35/112 (31.25%), Postives = 56/112 (50.00%), Query Frame = 1
Query: 1 LKHCARFPLPGSGSGLQQPVHVDDVVRVVCSERSVDVERWGEGCEIIDVAGPRVMSVRELISTAAAGVGLPVRIIPTPVPVIRLLCGVMTKVLTDPLITPAQLRMLVEGMHF 336
++ PLP G+ L QP+H DDVV C E ++ +R E I VAGP V+S R+L+ +G P ++P P ++++ + + P I ++R L E F
Sbjct: 150 IRKFGAVPLPAGGTALLQPIHSDDVVS--CIEAAL--QRDDALGEPIIVAGPEVISYRDLVQVVGRAIGKPPIVLPVPGFALQIVAALTAVLPGIPTIRIDEVRRLGEDKTF 257
BLAST of mRNA_M-pyrifera_M_contig113491.2812.1 vs. uniprot
Match: UPI00105CD479 (SDR family oxidoreductase n=1 Tax=Lysobacter segetis TaxID=2492394 RepID=UPI00105CD479) HSP 1 Score: 50.4 bits (119), Expect = 7.570e-5 Identity = 34/102 (33.33%), Postives = 50/102 (49.02%), Query Frame = 1
Query: 25 LPGSGSGLQQPVHVDDVVRVVCSERSVDVERWGEGCEIIDVAGPRVMSVRELISTAAAGVGL-PVRIIPTPVPVIRLLCGVMTKVLTDPLITPAQLRMLVEG 327
LPG G PVH+DDV+ + V +I+ GP M++R + T +GL P+R+IP P+P++RL M V L+ P + ML G
Sbjct: 172 LPGGGVQRVAPVHLDDVIGAI-----VQALESASPPRLIEAVGPECMTLRAYLDTLRRSLGLGPLRVIPVPMPLVRLSARAMQHV-PGSLVEPETIAMLERG 267 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113491.2812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig113491.2812.1 >prot_M-pyrifera_M_contig113491.2812.1 ID=prot_M-pyrifera_M_contig113491.2812.1|Name=mRNA_M-pyrifera_M_contig113491.2812.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp LKHCARFPLPGSGSGLQQPVHVDDVVRVVCSERSVDVERWGEGCEIIDVAback to top mRNA from alignment at M-pyrifera_M_contig113491:4..396+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig113491.2812.1 ID=mRNA_M-pyrifera_M_contig113491.2812.1|Name=mRNA_M-pyrifera_M_contig113491.2812.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig113491:4..396+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig113491:4..396+ >mRNA_M-pyrifera_M_contig113491.2812.1 ID=mRNA_M-pyrifera_M_contig113491.2812.1|Name=mRNA_M-pyrifera_M_contig113491.2812.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig113491:4..396+ (Macrocystis pyrifera P11B4 male)back to top |