mRNA_M-pyrifera_M_contig113491.2812.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113491.2812.1
Unique NamemRNA_M-pyrifera_M_contig113491.2812.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113491.2812.1 vs. uniprot
Match: A0A0Q1CYM9_9ACTN (Methyltransferase FkbM n=4 Tax=Frankia TaxID=1854 RepID=A0A0Q1CYM9_9ACTN)

HSP 1 Score: 58.2 bits (139), Expect = 1.580e-7
Identity = 33/72 (45.83%), Postives = 41/72 (56.94%), Query Frame = 1
Query:   19 FPLPGSGSGLQQPVHVDDVVRVVCSERSVDVERWGEGCEIIDVAGPRVMSVRELISTAAAGVGLPVRIIPTP 234
             PLPG G  L QPVHVDD+   V    S D    G G    DVAGPR +S+R++++ AAA  G  V  +P P
Sbjct:  160 LPLPGGGRRLHQPVHVDDLAATVLRALSADAA-VGRG---YDVAGPRALSLRQIVAAAAAAEGRRVYCVPVP 227          
BLAST of mRNA_M-pyrifera_M_contig113491.2812.1 vs. uniprot
Match: F8B3G4_9ACTN (NAD-dependent epimerase/dehydratase n=2 Tax=Frankia TaxID=1854 RepID=F8B3G4_9ACTN)

HSP 1 Score: 56.2 bits (134), Expect = 5.990e-7
Identity = 36/114 (31.58%), Postives = 56/114 (49.12%), Query Frame = 1
Query:    1 LKHCARFPLPGSGSGLQQPVHVDDVVRVVCSERSVDVERWGEGC--EIIDVAGPRVMSVRELISTAAAGVGLPVRIIPTPVPVIRLLCGVMTKVLTDPLITPAQLRMLVEGMHF 336
            L+     PLPG GS LQQPVHVDD+   V +   ++V      C   + ++AGP  ++ R +++ AAA VG  V  +P P+     +     ++   P +   Q+  L E   F
Sbjct:  154 LRRSPLLPLPGGGSRLQQPVHVDDLAAAVLAAARLEV------CVGRVYNLAGPEALTFRTIVAEAAAAVGRRVVTVPLPLRATLTVARGYERLAARPRLRAEQIARLAEDKAF 261          
BLAST of mRNA_M-pyrifera_M_contig113491.2812.1 vs. uniprot
Match: UPI001A2212F8 (NAD(P)H-binding protein n=1 Tax=Candidatus Dormibacteraeota bacterium TaxID=2052315 RepID=UPI001A2212F8)

HSP 1 Score: 53.9 bits (128), Expect = 4.020e-6
Identity = 34/104 (32.69%), Postives = 55/104 (52.88%), Query Frame = 1
Query:   19 FPLPGSGSGLQQPVHVDDVVRVVCSERSVDVERWGEGCEIIDVAGPRVMSVRELISTAAAGVGLPVRI-IPTPVPVIRLLCGVMTKVLTDPLITPAQLRMLVEG 327
             P+ G G  L QP+ +DDVVR V     + +ER       I++ GP  ++  ++I      +G  +R+ +  PV  +  +  +M +VL +P +TPAQLRML   
Sbjct:  168 IPVAGDGGALFQPISIDDVVRCVV----LSLER-APALREIEIGGPEQLTYDQIIDVVHDAIGAGMRVKVHVPVAALMPVAALMDRVLPNPPVTPAQLRMLARN 266          
BLAST of mRNA_M-pyrifera_M_contig113491.2812.1 vs. uniprot
Match: A0A7W1CAI5_9BACT (Complex I NDUFA9 subunit family protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7W1CAI5_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 4.320e-6
Identity = 37/99 (37.37%), Postives = 55/99 (55.56%), Query Frame = 1
Query:   22 PLPGSGSGLQQPVHVDDVVRVVCSERSVDVERWGEGCEIIDVAGPRVMSVRELISTAAAGVGLPVRIIPTPVPVIRLLCGVMTKVLTDPLITPAQLRML 318
            PLPG G    QPV V DV    C  ++  +E   E   + D+AGP V+++RE++S  A  +G     +P PV  +RL  G+  ++L  P +T  QL+ML
Sbjct:  105 PLPGGGRTRFQPVWVGDVAE--CFLQAARMEATPE--PVYDLAGPVVLTLREIVSVLARILGKRRATVPIPVAPLRLAAGLAERILPRPPLTRDQLKML 199          
BLAST of mRNA_M-pyrifera_M_contig113491.2812.1 vs. uniprot
Match: A0A522QFV5_9BACT (NAD-dependent epimerase/dehydratase family protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A522QFV5_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 1.960e-5
Identity = 34/106 (32.08%), Postives = 58/106 (54.72%), Query Frame = 1
Query:    1 LKHCARFPLPGSGSGLQQPVHVDDVVRVVCSERSVDVERWGEGCEIIDVAGPRVMSVRELISTAAAGVGLPVRIIPTPVPVIRLLCGVMTKVLTDPLITPAQLRML 318
            ++     PL G GS   QPV+V DV R++       +E  G     +++ GP VM+++EL+   AA +G+    +P P+P+I +L   + + L +P I+P  +R L
Sbjct:  168 IRKAPVIPLIGDGSSKVQPVYVGDVARLIVDA----LESPGAADRAVEIGGPEVMTMKELMLRIAALMGVHKLALPGPLPLI-MLAAALVQWLPNPPISPDAVRFL 268          
BLAST of mRNA_M-pyrifera_M_contig113491.2812.1 vs. uniprot
Match: A0A516H4W7_9PROT (NADH-ubiquinone oxidoreductase n=1 Tax=Ferrovibrio terrae TaxID=2594003 RepID=A0A516H4W7_9PROT)

HSP 1 Score: 50.4 bits (119), Expect = 6.650e-5
Identity = 34/112 (30.36%), Postives = 55/112 (49.11%), Query Frame = 1
Query:    1 LKHCARFPLPGSGSGLQQPVHVDDVVRVVCSERSVDVERWGEGCEIIDVAGPRVMSVRELISTAAAGVGLPVRIIPTPVPVIRLLCGVMTKVLTDPLITPAQLRMLVEGMHF 336
            ++     PLP  G+ L QP+H DDVV   C E ++  +R     E + VAGP+V+S R+L+      +G    ++P P   +++   +   V   P I   ++R L E   F
Sbjct:  150 IRKFGAVPLPAGGTALLQPIHTDDVVS--CIEAAL--QRDEAPGEPVIVAGPQVISYRDLVQAVGRAIGTSPTVLPVPGFALQIAAALTAAVPGIPTIRIDEVRRLGEDKTF 257          
BLAST of mRNA_M-pyrifera_M_contig113491.2812.1 vs. uniprot
Match: UPI001BC53031 (NAD(P)H-binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=UPI001BC53031)

HSP 1 Score: 50.4 bits (119), Expect = 6.650e-5
Identity = 35/112 (31.25%), Postives = 56/112 (50.00%), Query Frame = 1
Query:    1 LKHCARFPLPGSGSGLQQPVHVDDVVRVVCSERSVDVERWGEGCEIIDVAGPRVMSVRELISTAAAGVGLPVRIIPTPVPVIRLLCGVMTKVLTDPLITPAQLRMLVEGMHF 336
            ++     PLP  G+ L QP+H DDVV   C E ++  +R     E I VAGP V+S R+L+      +G P  ++P P   ++++  +   +   P I   ++R L E   F
Sbjct:  150 IRKFGAVPLPAGGTALLQPIHSDDVVS--CIEAAL--QRDDALGEPIIVAGPEVISYRDLVQVVGRAIGKPPIVLPVPGFALQIVAALTAVLPGIPTIRIDEVRRLGEDKTF 257          
BLAST of mRNA_M-pyrifera_M_contig113491.2812.1 vs. uniprot
Match: UPI00105CD479 (SDR family oxidoreductase n=1 Tax=Lysobacter segetis TaxID=2492394 RepID=UPI00105CD479)

HSP 1 Score: 50.4 bits (119), Expect = 7.570e-5
Identity = 34/102 (33.33%), Postives = 50/102 (49.02%), Query Frame = 1
Query:   25 LPGSGSGLQQPVHVDDVVRVVCSERSVDVERWGEGCEIIDVAGPRVMSVRELISTAAAGVGL-PVRIIPTPVPVIRLLCGVMTKVLTDPLITPAQLRMLVEG 327
            LPG G     PVH+DDV+  +     V          +I+  GP  M++R  + T    +GL P+R+IP P+P++RL    M  V    L+ P  + ML  G
Sbjct:  172 LPGGGVQRVAPVHLDDVIGAI-----VQALESASPPRLIEAVGPECMTLRAYLDTLRRSLGLGPLRVIPVPMPLVRLSARAMQHV-PGSLVEPETIAMLERG 267          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113491.2812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A0Q1CYM9_9ACTN1.580e-745.83Methyltransferase FkbM n=4 Tax=Frankia TaxID=1854 ... [more]
F8B3G4_9ACTN5.990e-731.58NAD-dependent epimerase/dehydratase n=2 Tax=Franki... [more]
UPI001A2212F84.020e-632.69NAD(P)H-binding protein n=1 Tax=Candidatus Dormiba... [more]
A0A7W1CAI5_9BACT4.320e-637.37Complex I NDUFA9 subunit family protein n=1 Tax=Ge... [more]
A0A522QFV5_9BACT1.960e-532.08NAD-dependent epimerase/dehydratase family protein... [more]
A0A516H4W7_9PROT6.650e-530.36NADH-ubiquinone oxidoreductase n=1 Tax=Ferrovibrio... [more]
UPI001BC530316.650e-531.25NAD(P)H-binding protein n=1 Tax=Alphaproteobacteri... [more]
UPI00105CD4797.570e-533.33SDR family oxidoreductase n=1 Tax=Lysobacter seget... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113491contigM-pyrifera_M_contig113491:4..396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815649.7110236-CDS-M-pyrifera_M_contig113491:3..901622815649.7110236-CDS-M-pyrifera_M_contig113491:3..90Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113491 4..90 +
1692277504.703171-CDS-M-pyrifera_M_contig113491:3..901692277504.703171-CDS-M-pyrifera_M_contig113491:3..90Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113491 4..90 +
1622815649.723375-CDS-M-pyrifera_M_contig113491:147..3961622815649.723375-CDS-M-pyrifera_M_contig113491:147..396Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113491 148..396 +
1692277504.7165077-CDS-M-pyrifera_M_contig113491:147..3961692277504.7165077-CDS-M-pyrifera_M_contig113491:147..396Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113491 148..396 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113491.2812.1prot_M-pyrifera_M_contig113491.2812.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113491 4..396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113491.2812.1

>prot_M-pyrifera_M_contig113491.2812.1 ID=prot_M-pyrifera_M_contig113491.2812.1|Name=mRNA_M-pyrifera_M_contig113491.2812.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
LKHCARFPLPGSGSGLQQPVHVDDVVRVVCSERSVDVERWGEGCEIIDVA
GPRVMSVRELISTAAAGVGLPVRIIPTPVPVIRLLCGVMTKVLTDPLITP
AQLRMLVEGMHF
back to top

mRNA from alignment at M-pyrifera_M_contig113491:4..396+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113491.2812.1 ID=mRNA_M-pyrifera_M_contig113491.2812.1|Name=mRNA_M-pyrifera_M_contig113491.2812.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig113491:4..396+ (Macrocystis pyrifera P11B4 male)
CTGAAGCACTGCGCTCGCTTTCCTCTCCCTGGCAGCGGCAGCGGCCTCCA GCAGCCTGTGCATGTCGACGACGTCGTTCGAGTGGTGGTGGAGGAGGGCC TGGGCCTCCCCTCCCTCCCCCAGGCCTCCGCTGGCGCAGTGAAGTGCAGC GAAAGGTCAGTGGATGTGGAGCGATGGGGAGAGGGCTGTGAAATCATCGA CGTCGCAGGACCTCGCGTGATGAGTGTGAGGGAACTCATCAGCACCGCGG CCGCGGGCGTGGGTCTCCCAGTGAGGATCATCCCCACGCCTGTGCCTGTG ATCCGTCTCTTGTGTGGCGTAATGACGAAAGTGCTCACGGACCCTCTCAT TACTCCAGCGCAGCTGCGCATGCTCGTGGAGGGCATGCACTTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig113491:4..396+

>mRNA_M-pyrifera_M_contig113491.2812.1 ID=mRNA_M-pyrifera_M_contig113491.2812.1|Name=mRNA_M-pyrifera_M_contig113491.2812.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig113491:4..396+ (Macrocystis pyrifera P11B4 male)
CTGAAGCACTGCGCTCGCTTTCCTCTCCCTGGCAGCGGCAGCGGCCTCCA
GCAGCCTGTGCATGTCGACGACGTCGTTCGAGTGGTGCTGAAGCACTGCG
CTCGCTTTCCTCTCCCTGGCAGCGGCAGCGGCCTCCAGCAGCCTGTGCAT
GTCGACGACGTCGTTCGAGTGGTGTGCAGCGAAAGGTCAGTGGATGTGGA
GCGATGGGGAGAGGGCTGTGAAATCATCGACGTCGCAGGACCTCGCGTGA
TGAGTGTGAGGGAACTCATCAGCACCGCGGCCGCGGGCGTGGGTCTCCCA
GTGAGGATCATCCCCACGCCTGTGCCTGTGATCCGTCTCTTGTGTGGCGT
AATGACGAAAGTGCTCACGGACCCTCTCATTACTCCAGCGCAGCTGCGCA
TGCTCGTGGAGGGCATGCACTTCTGCAGCGAAAGGTCAGTGGATGTGGAG
CGATGGGGAGAGGGCTGTGAAATCATCGACGTCGCAGGACCTCGCGTGAT
GAGTGTGAGGGAACTCATCAGCACCGCGGCCGCGGGCGTGGGTCTCCCAG
TGAGGATCATCCCCACGCCTGTGCCTGTGATCCGTCTCTTGTGTGGCGTA
ATGACGAAAGTGCTCACGGACCCTCTCATTACTCCAGCGCAGCTGCGCAT
GCTCGTGGAGGGCATGCACTTC
back to top