mRNA_M-pyrifera_M_contig11344.2806.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11344.2806.1
Unique NamemRNA_M-pyrifera_M_contig11344.2806.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11344.2806.1 vs. uniprot
Match: D8LD12_ECTSI (Argininosuccinate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD12_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 1.180e-32
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1 
Query:    1 KVYIEDLCKEFVTDFVFEAVKANATYEGRYLLGTSLARPVIAKRQVEIAQKEGAKYVSHGATGK 192
            KVYIEDLC+EFVTDFVFEAVKANA YEGRYLLGTSLARPVIAKRQVEIAQKEGAKYVSHGATGK
Sbjct:   70 KVYIEDLCEEFVTDFVFEAVKANAQYEGRYLLGTSLARPVIAKRQVEIAQKEGAKYVSHGATGK 133
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BLAST of mRNA_M-pyrifera_M_contig11344.2806.1 vs. uniprot
Match: A0A6H5KXG1_9PHAE (Argininosuccinate synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXG1_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.360e-32
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1 
Query:    1 KVYIEDLCKEFVTDFVFEAVKANATYEGRYLLGTSLARPVIAKRQVEIAQKEGAKYVSHGATGK 192
            KVYIEDLC+EFVTDFVFEAVKANA YEGRYLLGTSLARPVIAKRQVEIAQKEGAKYVSHGATGK
Sbjct:   70 KVYIEDLCEEFVTDFVFEAVKANAQYEGRYLLGTSLARPVIAKRQVEIAQKEGAKYVSHGATGK 133
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BLAST of mRNA_M-pyrifera_M_contig11344.2806.1 vs. uniprot
Match: A0A5E4LN10_9ARCH (Argininosuccinate synthase n=1 Tax=uncultured archaeon TaxID=115547 RepID=A0A5E4LN10_9ARCH)

HSP 1 Score: 114 bits (286), Expect = 7.330e-29
Identity = 55/64 (85.94%), Postives = 61/64 (95.31%), Query Frame = 1 
Query:    1 KVYIEDLCKEFVTDFVFEAVKANATYEGRYLLGTSLARPVIAKRQVEIAQKEGAKYVSHGATGK 192
            KVYIEDL KEFVTDF+F A+KANA YEGRYLLGTSLARPVIAK+Q+EIA+KEGA+YVSHGATGK
Sbjct:   55 KVYIEDLKKEFVTDFIFPAIKANAIYEGRYLLGTSLARPVIAKKQIEIAEKEGAEYVSHGATGK 118
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BLAST of mRNA_M-pyrifera_M_contig11344.2806.1 vs. uniprot
Match: A0A7S2UY94_9STRA (Argininosuccinate synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY94_9STRA)

HSP 1 Score: 112 bits (279), Expect = 3.870e-28
Identity = 54/64 (84.38%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:    1 KVYIEDLCKEFVTDFVFEAVKANATYEGRYLLGTSLARPVIAKRQVEIAQKEGAKYVSHGATGK 192
            KV+IEDL KEFVTD+VFEA+KANA YE RYLLGTS+ARPVIAKRQ+EIAQ EGAKYV+HGATGK
Sbjct:    1 KVFIEDLKKEFVTDYVFEAIKANAIYESRYLLGTSIARPVIAKRQIEIAQAEGAKYVAHGATGK 64
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BLAST of mRNA_M-pyrifera_M_contig11344.2806.1 vs. uniprot
Match: A0A524QSY1_9BACT (Argininosuccinate synthase (Fragment) n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A524QSY1_9BACT)

HSP 1 Score: 108 bits (269), Expect = 7.250e-28
Identity = 52/64 (81.25%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    1 KVYIEDLCKEFVTDFVFEAVKANATYEGRYLLGTSLARPVIAKRQVEIAQKEGAKYVSHGATGK 192
            KVY+EDL KEFVTDF+F A KANA YEGRYLLGT+LARP+IAKRQ+EIA KEGA YV+HGATGK
Sbjct:   56 KVYVEDLKKEFVTDFIFPAFKANALYEGRYLLGTALARPLIAKRQIEIAWKEGAPYVAHGATGK 119
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BLAST of mRNA_M-pyrifera_M_contig11344.2806.1 vs. uniprot
Match: W7U626_9STRA (Argininosuccinate synthase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U626_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.140e-27
Identity = 56/64 (87.50%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:    1 KVYIEDLCKEFVTDFVFEAVKANATYEGRYLLGTSLARPVIAKRQVEIAQKEGAKYVSHGATGK 192
            KVYIEDL +EFV D+VF AVKANA YEGRYLLGTSLARPVIAKRQVEIAQKEGAK++SHGATGK
Sbjct:   59 KVYIEDLREEFVKDYVFWAVKANAQYEGRYLLGTSLARPVIAKRQVEIAQKEGAKWLSHGATGK 122
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BLAST of mRNA_M-pyrifera_M_contig11344.2806.1 vs. uniprot
Match: A0A2P4YCH0_9STRA (Argininosuccinate synthase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YCH0_9STRA)

HSP 1 Score: 107 bits (268), Expect = 4.690e-27
Identity = 53/64 (82.81%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:    1 KVYIEDLCKEFVTDFVFEAVKANATYEGRYLLGTSLARPVIAKRQVEIAQKEGAKYVSHGATGK 192
            KVYIEDL +EFV +++FEAVKANA YE RYLLGTSLARPVIAK+QVEIAQ EGAKYV+HGATGK
Sbjct:   63 KVYIEDLREEFVKNYIFEAVKANAIYESRYLLGTSLARPVIAKKQVEIAQAEGAKYVAHGATGK 126
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BLAST of mRNA_M-pyrifera_M_contig11344.2806.1 vs. uniprot
Match: A0A662DYA2_9BACT (Argininosuccinate synthase (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A662DYA2_9BACT)

HSP 1 Score: 103 bits (257), Expect = 5.900e-27
Identity = 48/64 (75.00%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:    1 KVYIEDLCKEFVTDFVFEAVKANATYEGRYLLGTSLARPVIAKRQVEIAQKEGAKYVSHGATGK 192
            KV++EDL KEFVTD++F A KANA YEGRYLLGT++ARP+IAKRQ+EIA  +GA YVSHGATGK
Sbjct:   56 KVFVEDLKKEFVTDYIFPAFKANAIYEGRYLLGTAIARPIIAKRQIEIADAQGAVYVSHGATGK 119
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BLAST of mRNA_M-pyrifera_M_contig11344.2806.1 vs. uniprot
Match: A0A024FZ42_9STRA (Argininosuccinate synthase n=2 Tax=Albugo TaxID=65356 RepID=A0A024FZ42_9STRA)

HSP 1 Score: 109 bits (272), Expect = 8.360e-27
Identity = 54/64 (84.38%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:    1 KVYIEDLCKEFVTDFVFEAVKANATYEGRYLLGTSLARPVIAKRQVEIAQKEGAKYVSHGATGK 192
            KVYIEDL +EFV DF+FEAVKANA YE RYLLGTSLARPVIAK+QVEIAQKEGA +V+HGATGK
Sbjct:   63 KVYIEDLRREFVEDFIFEAVKANAIYESRYLLGTSLARPVIAKKQVEIAQKEGALFVAHGATGK 126
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BLAST of mRNA_M-pyrifera_M_contig11344.2806.1 vs. uniprot
Match: A0A842WKA0_9ARCH (Argininosuccinate synthase (Fragment) n=2 Tax=Candidatus Micrarchaeota archaeon TaxID=2250274 RepID=A0A842WKA0_9ARCH)

HSP 1 Score: 106 bits (265), Expect = 1.330e-26
Identity = 50/64 (78.12%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:    1 KVYIEDLCKEFVTDFVFEAVKANATYEGRYLLGTSLARPVIAKRQVEIAQKEGAKYVSHGATGK 192
            KVYIED+ +EFVT ++F+A+K NA YEG YLLGT+LARP+IAK+QVEIAQKEGAKYVSHGATGK
Sbjct:   58 KVYIEDMKEEFVTHYIFQALKGNAVYEGNYLLGTALARPLIAKKQVEIAQKEGAKYVSHGATGK 121
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11344.2806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD12_ECTSI1.180e-3296.88Argininosuccinate synthase n=1 Tax=Ectocarpus sili... [more]
A0A6H5KXG1_9PHAE1.360e-3296.88Argininosuccinate synthase n=1 Tax=Ectocarpus sp. ... [more]
A0A5E4LN10_9ARCH7.330e-2985.94Argininosuccinate synthase n=1 Tax=uncultured arch... [more]
A0A7S2UY94_9STRA3.870e-2884.38Argininosuccinate synthase n=1 Tax=Fibrocapsa japo... [more]
A0A524QSY1_9BACT7.250e-2881.25Argininosuccinate synthase (Fragment) n=1 Tax=Gemm... [more]
W7U626_9STRA2.140e-2787.50Argininosuccinate synthase n=3 Tax=Monodopsidaceae... [more]
A0A2P4YCH0_9STRA4.690e-2782.81Argininosuccinate synthase (Fragment) n=1 Tax=Phyt... [more]
A0A662DYA2_9BACT5.900e-2775.00Argininosuccinate synthase (Fragment) n=1 Tax=Acid... [more]
A0A024FZ42_9STRA8.360e-2784.38Argininosuccinate synthase n=2 Tax=Albugo TaxID=65... [more]
A0A842WKA0_9ARCH1.330e-2678.13Argininosuccinate synthase (Fragment) n=2 Tax=Cand... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11344contigM-pyrifera_M_contig11344:8601..9825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.2
Seed ortholog evalue1.1e-26
Seed eggNOG ortholog2880.D8LD12
Preferred nameASS1
KEGG rclassRC00380,RC00629
KEGG koko:K01940
KEGG ReactionR01954
KEGG Pathwayko00220,ko00250,ko01100,ko01110,ko01130,ko01230,ko05418,map00220,map00250,map01100,map01110,map01130,map01230,map05418
KEGG ModuleM00029,M00844,M00845
Hectar predicted targeting categoryother localisation
GOsGO:0000050,GO:0000052,GO:0000053,GO:0000323,GO:0001101,GO:0001505,GO:0001655,GO:0001822,GO:0001889,GO:0002237,GO:0002376,GO:0002526,GO:0003674,GO:0003824,GO:0004055,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005764,GO:0005773,GO:0005783,GO:0005829,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006531,GO:0006575,GO:0006807,GO:0006950,GO:0006952,GO:0006953,GO:0006954,GO:0006955,GO:0007162,GO:0007275,GO:0007494,GO:0007517,GO:0007568,GO:0007584,GO:0007623,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009066,GO:0009084,GO:0009410,GO:0009605,GO:0009607,GO:0009617,GO:0009636,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010043,GO:0010046,GO:0010243,GO:0012505,GO:0014070,GO:0014074,GO:0014075,GO:0015643,GO:0016020,GO:0016053,GO:0016597,GO:0016874,GO:0016879,GO:0019222,GO:0019627,GO:0019752,GO:0019867,GO:0022407,GO:0022408,GO:0030155,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031406,GO:0031667,GO:0031960,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032355,GO:0032496,GO:0032501,GO:0032502,GO:0032870,GO:0033554,GO:0033762,GO:0033993,GO:0034097,GO:0034201,GO:0034341,GO:0034405,GO:0034612,GO:0034616,GO:0034641,GO:0035295,GO:0035690,GO:0036094,GO:0036477,GO:0042221,GO:0042493,GO:0042802,GO:0042995,GO:0043005,GO:0043025,GO:0043167,GO:0043168,GO:0043177,GO:0043200,GO:0043204,GO:0043207,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044297,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0045428,GO:0045429,GO:0046394,GO:0046683,GO:0048511,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048565,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051384,GO:0051591,GO:0051704,GO:0051707,GO:0051716,GO:0055123,GO:0060359,GO:0060416,GO:0060538,GO:0060539,GO:0060541,GO:0061008,GO:0061061,GO:0065007,GO:0065008,GO:0070542,GO:0070852,GO:0070887,GO:0071216,GO:0071219,GO:0071222,GO:0071229,GO:0071230,GO:0071242,GO:0071310,GO:0071320,GO:0071345,GO:0071346,GO:0071356,GO:0071375,GO:0071377,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071398,GO:0071400,GO:0071407,GO:0071417,GO:0071418,GO:0071466,GO:0071495,GO:0071498,GO:0071499,GO:0071548,GO:0071549,GO:0071704,GO:0071941,GO:0072001,GO:0072350,GO:0097327,GO:0097458,GO:0098588,GO:0098805,GO:0120025,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901652,GO:1901653,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1903037,GO:1903038,GO:1903426,GO:1903428,GO:1904407,GO:2000377,GO:2000379
EggNOG free text desc.argininosuccinate synthase activity
EggNOG OGsCOG0137@1,KOG1706@2759
EC6.3.4.5
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons2
Model size193
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815649.4480975-CDS-M-pyrifera_M_contig11344:8601..86891622815649.4480975-CDS-M-pyrifera_M_contig11344:8601..8689Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11344 8602..8689 -
1692277504.6020064-CDS-M-pyrifera_M_contig11344:8601..86891692277504.6020064-CDS-M-pyrifera_M_contig11344:8601..8689Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11344 8602..8689 -
1622815649.460852-CDS-M-pyrifera_M_contig11344:9721..98251622815649.460852-CDS-M-pyrifera_M_contig11344:9721..9825Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11344 9722..9825 -
1692277504.6164699-CDS-M-pyrifera_M_contig11344:9721..98251692277504.6164699-CDS-M-pyrifera_M_contig11344:9721..9825Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11344 9722..9825 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11344.2806.1prot_M-pyrifera_M_contig11344.2806.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11344 8602..9825 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11344.2806.1

>prot_M-pyrifera_M_contig11344.2806.1 ID=prot_M-pyrifera_M_contig11344.2806.1|Name=mRNA_M-pyrifera_M_contig11344.2806.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=64bp
KVYIEDLCKEFVTDFVFEAVKANATYEGRYLLGTSLARPVIAKRQVEIAQ
KEGAKYVSHGATGK
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mRNA from alignment at M-pyrifera_M_contig11344:8601..9825-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11344.2806.1 ID=mRNA_M-pyrifera_M_contig11344.2806.1|Name=mRNA_M-pyrifera_M_contig11344.2806.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1225bp|location=Sequence derived from alignment at M-pyrifera_M_contig11344:8601..9825- (Macrocystis pyrifera P11B4 male)
AAGGTGTACATCGAAGACCTTTGCAAGGAGTTCGTGACGGACTTCGTGTT
CGAGGCGGTCAAGGCCAACGCCACGTACGAGGGCCGCTACCTCCTCGGCA
CGAGGTGAGTCCGTTCACCGCGTGAGGGGGCCGTTGTGTTTCTGCTGCGA
CTCGCGTACACCACTCGCCGCGCTTTGCTCTTGATCGCCTTGCTTGTTCT
CTTCCCTGACTTGACTTTGGAATGCCTTGGGTTGGCCTGGGTTGACTTGG
CTTGCATTGGCTTGCATTGCGTTGGCTTGCAATCGTCAGCGAGTCGTTAG
TGAGCGGCACTTTTTGCTATCGCGTTTCCGTCAGACGCGAGAATACGGAG
AGCAGCACTTTTCCCATCGCGTTTCCGTCAGACGCGAGAATGCTGCCTCC
GACACGGCGGTGACCAGGCTTTATAAGCGCGCACGCGCGTGTTCTCTCAA
AGCCCTACCGTTGTCCTACTTGCTGGCGCCCTCCTCCCTTCTCGGCTGCA
CCTACTGTATATCTACATTCAACAGTGATTCACCAAAAAAATATCGAGTC
ACCGCAGCAGTATCTCACGATACAGTTTCTTAACCGTAATGGTACCGTAC
GGTAATTTCCGTCCTGGGCTATAATATAACCTTAGCTGAGCTGACCTTTC
CCACCCCCACCGGGAAGAAAATAGAGGAATGTGACGTGGAAGAGTTTGGT
ACACTATGAGATATCAGCGAAAAAACGATCGCTATCCTCGGAGATAAATG
GTGGTCACAGGCGGCGAAACAGGAAGGGGATATGAGTAGCAAAAAGTCTG
TGTACTATATGGAAACAACGTCATGAGCGCCCCAATGTTGGAGGTGTCTC
TATTTGGAGTAGGAACCGTGGTCCGCCTCGAAAGGGATGCGTGGTCAAAC
GGCTAACGCAAGCAACAAATGAGTACGCCCTCCCCCGCCCCGGCCGCTCT
TTTTTGTTTTCACTGTGTCTTCTGTTTTGGAGCAGCCTGGCACGGTCGGT
GTTCCTGTATACCTGGCATACCGTATGGTATTGCACGGTACTTCCCCGTC
CTGAGCGGTAACCTGAGCTGAGCTTTGCTACCCCCCCCCGCCTCTCCGCC
TCGCTTTTTTTTGTTGATGCTTTTTTTTTCGAGCAGCCTGGCGCGGCCTG
TGATCGCGAAGCGGCAGGTGGAGATCGCCCAGAAGGAGGGGGCGAAGTAC
GTGTCGCACGGCGCTACCGGCAAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11344:8601..9825-

>mRNA_M-pyrifera_M_contig11344.2806.1 ID=mRNA_M-pyrifera_M_contig11344.2806.1|Name=mRNA_M-pyrifera_M_contig11344.2806.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig11344:8601..9825- (Macrocystis pyrifera P11B4 male)
AAGGTGTACATCGAAGACCTTTGCAAGGAGTTCGTGACGGACTTCGTGTT
CGAGGCGGTCAAGGCCAACGCCACGTACGAGGGCCGCTACCTCCTCGGCA
CGAGAAGGTGTACATCGAAGACCTTTGCAAGGAGTTCGTGACGGACTTCG
TGTTCGAGGCGGTCAAGGCCAACGCCACGTACGAGGGCCGCTACCTCCTC
GGCACGAGCCTGGCGCGGCCTGTGATCGCGAAGCGGCAGGTGGAGATCGC
CCAGAAGGAGGGGGCGAAGTACGTGTCGCACGGCGCTACCGGCAAGCCTG
GCGCGGCCTGTGATCGCGAAGCGGCAGGTGGAGATCGCCCAGAAGGAGGG
GGCGAAGTACGTGTCGCACGGCGCTACCGGCAAG
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