mRNA_M-pyrifera_M_contig11341.2804.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11341.2804.1
Unique NamemRNA_M-pyrifera_M_contig11341.2804.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11341.2804.1 vs. uniprot
Match: D7G5E6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5E6_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.420e-25
Identity = 53/82 (64.63%), Postives = 61/82 (74.39%), Query Frame = -3 
Query:  148 DGDSSKTSKSSSTEEKVSEPPVLPDSRLHLVALDVKWFTTFHRAVLGARNAMVLAGDMIEKNMEKMVRPKGTNTQGGGMYSF 393
            DGDS        TEEK SE    PDS  HL+ALDVKWF + H  +L AR+++VLA DMIEKNMEK++RPKGTNTQGGGMYSF
Sbjct:  163 DGDSXXXXXXXXTEEKTSESSFAPDSANHLIALDVKWFVSLHHTLLRARDSLVLAADMIEKNMEKLLRPKGTNTQGGGMYSF 244
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BLAST of mRNA_M-pyrifera_M_contig11341.2804.1 vs. uniprot
Match: A0A2D4BJC1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJC1_PYTIN)

HSP 1 Score: 55.8 bits (133), Expect = 1.130e-6
Identity = 30/80 (37.50%), Postives = 48/80 (60.00%), Query Frame = -3 
Query:  154 DGDSSKTSKSSSTEEKVSEPPVLPDSRLHLVALDVKWFTTFHRAVLGARNAMVLAGDMIEKNMEKMVRPKGTNTQGGGMY 393
            +GD  KT  ++  +E  +  PV+ D   ++VA+DVKW+    R +   R+A  +A D IEKN +K+++P+G    G GMY
Sbjct:  165 EGDEKKTVVATVGKETATAQPVVEDWIANVVAIDVKWYFHLARVLELVRDAYAIAFDRIEKNKDKILKPRGQERSGYGMY 244
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11341.2804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5E6_ECTSI1.420e-2564.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2D4BJC1_PYTIN1.130e-637.50Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11341contigM-pyrifera_M_contig11341:2233..2627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size396
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815649.2852638-CDS-M-pyrifera_M_contig11341:2232..25981622815649.2852638-CDS-M-pyrifera_M_contig11341:2232..2598Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11341 2233..2598 +
1692277504.496662-CDS-M-pyrifera_M_contig11341:2232..25981692277504.496662-CDS-M-pyrifera_M_contig11341:2232..2598Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11341 2233..2598 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815649.29804-UTR-M-pyrifera_M_contig11341:2598..26271622815649.29804-UTR-M-pyrifera_M_contig11341:2598..2627Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11341 2599..2627 +
1692277504.5151598-UTR-M-pyrifera_M_contig11341:2598..26271692277504.5151598-UTR-M-pyrifera_M_contig11341:2598..2627Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11341 2599..2627 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11341.2804.1prot_M-pyrifera_M_contig11341.2804.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11341 2233..2598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11341.2804.1

>prot_M-pyrifera_M_contig11341.2804.1 ID=prot_M-pyrifera_M_contig11341.2804.1|Name=mRNA_M-pyrifera_M_contig11341.2804.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
SFLPLAPRCEQVQRSNQLKAQLGRDQATPGHADVESERKQSSTKPVSPLE
RVHAAPLRVGALRTNHLLHVLLDHVPRQNHRVPSPEYRAMESGEPLNVQG
HEVEARVRQDRRLGHLFFRAG*
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mRNA from alignment at M-pyrifera_M_contig11341:2233..2627+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11341.2804.1 ID=mRNA_M-pyrifera_M_contig11341.2804.1|Name=mRNA_M-pyrifera_M_contig11341.2804.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=395bp|location=Sequence derived from alignment at M-pyrifera_M_contig11341:2233..2627+ (Macrocystis pyrifera P11B4 male)
TCCTTCCTGCCCCTCGCCCCCCGATGTGAGCAAGTACAACGTAGCAACCA
GCTCAAGGCACAACTCGGCCGAGACCAGGCAACGCCAGGCCACGCCGACG
TCGAGTCAGAAAGAAAGCAAAGCAGCACTAAGCCAGTCAGCCCACTAGAA
CGAGTACATGCCGCCCCCCTGCGTGTTGGTGCCCTTCGGACGAACCATCT
TCTCCATGTTCTTCTCGATCATGTCCCCCGCCAGAACCATCGCGTTCCTA
GCCCCGAGTACCGCGCGATGGAAAGTGGTGAACCACTTAACGTCCAGGGC
CACGAGGTGGAGGCGCGAGTCCGGCAAGACCGGCGGCTCGGACACCTTTT
CTTCCGTGCTGGATGATTTCGATGTCTTCGAGGAGTCGCCATCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11341:2233..2627+

>mRNA_M-pyrifera_M_contig11341.2804.1 ID=mRNA_M-pyrifera_M_contig11341.2804.1|Name=mRNA_M-pyrifera_M_contig11341.2804.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig11341:2233..2627+ (Macrocystis pyrifera P11B4 male)
TCCTTCCTGCCCCTCGCCCCCCGATGTGAGCAAGTACAACGTAGCAACCA
GCTCAAGGCACAACTCGGCCGAGACCAGGCAACGCCAGGCCACGCCGACG
TCGAGTCAGAAAGAAAGCAAAGCAGCACTAAGCCAGTCAGCCCACTAGAA
CGAGTACATGCCGCCCCCCTGCGTGTTGGTGCCCTTCGGACGAACCATCT
TCTCCATGTTCTTCTCGATCATGTCCCCCGCCAGAACCATCGCGTTCCTA
GCCCCGAGTACCGCGCGATGGAAAGTGGTGAACCACTTAACGTCCAGGGC
CACGAGGTGGAGGCGCGAGTCCGGCAAGACCGGCGGCTCGGACACCTTTT
CTTCCGTGCTGGATGATCCTTCCTGCCCCTCGCCCCCCGATGTGAGCAAG
TACAACGTAGCAACCAGCTCAAGGCACAACTCGGCCGAGACCAGGCAACG
CCAGGCCACGCCGACGTCGAGTCAGAAAGAAAGCAAAGCAGCACTAAGCC
AGTCAGCCCACTAGAACGAGTACATGCCGCCCCCCTGCGTGTTGGTGCCC
TTCGGACGAACCATCTTCTCCATGTTCTTCTCGATCATGTCCCCCGCCAG
AACCATCGCGTTCCTAGCCCCGAGTACCGCGCGATGGAAAGTGGTGAACC
ACTTAACGTCCAGGGCCACGAGGTGGAGGCGCGAGTCCGGCAAGACCGGC
GGCTCGGACACCTTTTCTTCCGTGCTGGATGA
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