mRNA_M-pyrifera_M_contig113391.2800.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113391.2800.1
Unique NamemRNA_M-pyrifera_M_contig113391.2800.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113391.2800.1 vs. uniprot
Match: UPI000A5AF682 (glycosyltransferase family 4 protein n=1 Tax=Methyloterricola oryzae TaxID=1495050 RepID=UPI000A5AF682)

HSP 1 Score: 158 bits (400), Expect = 2.010e-44
Identity = 71/131 (54.20%), Postives = 101/131 (77.10%), Query Frame = 1
Query:    7 KVVFINRFFYPDHSATSQLLTDLAFTLAENNLGKIYVITSRQKYDSPNAVLEQREIVNGVTIVRIWTSRFGRGSILGRAVDYLTFYFSAVISMLKIVQNNDIVVAKTDPPMISSAAWIVTTAKHARLVNWL 399
            K++F+NR+FYPDHSATSQ+L+DLAF LAEN   +I+V+TSRQ+YD   A L   E + GV+I R+WTSRFGR ++LGRA+DY +FY +A ++++++     ++VAKTDPP+IS  A +V   K A+LVNW+
Sbjct:    3 KLIFVNRYFYPDHSATSQMLSDLAFALAENQEFEIHVVTSRQRYDDAMAALSTEEKIRGVSIHRVWTSRFGRQNLLGRAIDYASFYVTAFVALMRLADEFSLIVAKTDPPLISVVAALVARIKSAKLVNWI 133          
BLAST of mRNA_M-pyrifera_M_contig113391.2800.1 vs. uniprot
Match: UPI0004082746 (glycosyltransferase family 4 protein n=1 Tax=Methylocaldum szegediense TaxID=73780 RepID=UPI0004082746)

HSP 1 Score: 153 bits (387), Expect = 2.450e-42
Identity = 72/133 (54.14%), Postives = 96/133 (72.18%), Query Frame = 1
Query:    1 NRKVVFINRFFYPDHSATSQLLTDLAFTLAENNLGKIYVITSRQKYDSPNAVLEQREIVNGVTIVRIWTSRFGRGSILGRAVDYLTFYFSAVISMLKIVQNNDIVVAKTDPPMISSAAWIVTTAKHARLVNWL 399
            N K++F+NR+FYPDHSATSQ+L+DLAF LA      + V+T RQ YD P+A L + E V GV I+RIWT+RFGRG +LGRAVDY +FY SA   +L++  + D++VAKTDPP+IS    +V   + A  VNW+
Sbjct:    3 NHKIIFVNRYFYPDHSATSQMLSDLAFDLARAGYS-VSVVTGRQLYDRPDAALSENESVGGVKILRIWTTRFGRGGLLGRAVDYASFYLSAFSMLLRLTASGDVIVAKTDPPLISVVCGLVALIRGAVSVNWI 134          
BLAST of mRNA_M-pyrifera_M_contig113391.2800.1 vs. uniprot
Match: Q609R1_METCA (Putative colanic acid biosynthesis glycosyl transferase n=4 Tax=Methylococcus capsulatus TaxID=414 RepID=Q609R1_METCA)

HSP 1 Score: 150 bits (378), Expect = 3.680e-41
Identity = 74/131 (56.49%), Postives = 97/131 (74.05%), Query Frame = 1
Query:    7 KVVFINRFFYPDHSATSQLLTDLAFTLAENNLGKIYVITSRQKYDSPNAVLEQREIVNGVTIVRIWTSRFGRGSILGRAVDYLTFYFSAVISMLKIVQNNDIVVAKTDPPMISSAAWIVTTAKHARLVNWL 399
            +++F+NRFFYPDHSATSQLL+DLAF L E++  K+ VITSRQ+YD P A L   E V GV + R+WTSRFGR  + GRA+DYL+FY SA   + ++ +  D++VAKTDPP+IS    +V   + ARLVNWL
Sbjct:    2 QILFLNRFFYPDHSATSQLLSDLAFALGESDR-KVRVITSRQRYDDPGADLPAFEAVGGVFVHRVWTSRFGRAWLPGRALDYLSFYVSAGWRLWRLTREGDVIVAKTDPPLISLVGAVVARLRGARLVNWL 131          
BLAST of mRNA_M-pyrifera_M_contig113391.2800.1 vs. uniprot
Match: A0A7T0JMJ8_9GAMM (Glycosyltransferase family 4 protein n=1 Tax=Methylomonas sp. LL1 TaxID=2785785 RepID=A0A7T0JMJ8_9GAMM)

HSP 1 Score: 150 bits (378), Expect = 3.680e-41
Identity = 72/132 (54.55%), Postives = 102/132 (77.27%), Query Frame = 1
Query:    7 KVVFINRFFYPDHSATSQLLTDLAFTLAENNLGK-IYVITSRQKYDSPNAVLEQREIVNGVTIVRIWTSRFGRGSILGRAVDYLTFYFSAVISMLKIVQNNDIVVAKTDPPMISSAAWIVTTAKHARLVNWL 399
            K +FINR+FYPDHSATSQ+LTDLAF LA+N+  + I+++TSRQ+YD  +A L   E++  V I R+ T+RFGR ++LGRA DYL+FY S+ ++++K+ ++ D ++AKTDPPMIS  A +V   K+A LVNWL
Sbjct:    8 KHIFINRYFYPDHSATSQMLTDLAFGLAKNSSNESIHIVTSRQRYDDASARLPAYEVIRNVHIHRVATTRFGRQNLLGRAFDYLSFYLSSFVTLIKLTKSGDTLIAKTDPPMISVIAALVAKLKNAHLVNWL 139          
BLAST of mRNA_M-pyrifera_M_contig113391.2800.1 vs. uniprot
Match: UPI00098B9AF2 (glycosyltransferase family 4 protein n=1 Tax=unclassified Methylocaldum TaxID=2622260 RepID=UPI00098B9AF2)

HSP 1 Score: 150 bits (379), Expect = 3.690e-41
Identity = 71/133 (53.38%), Postives = 95/133 (71.43%), Query Frame = 1
Query:    1 NRKVVFINRFFYPDHSATSQLLTDLAFTLAENNLGKIYVITSRQKYDSPNAVLEQREIVNGVTIVRIWTSRFGRGSILGRAVDYLTFYFSAVISMLKIVQNNDIVVAKTDPPMISSAAWIVTTAKHARLVNWL 399
            N K++F+NR+FYPDHSATSQ+L+DLAF LA      + V+TSRQ YD P A L + E + GV I RIWT+RFGR  +LGRA+DY +FY SA + +L++    D++VAKTDPP+IS    +V   + A LVNW+
Sbjct:    3 NHKIIFVNRYFYPDHSATSQMLSDLAFDLACEGY-PVNVVTSRQLYDRPTAELTKAEDIRGVRIFRIWTTRFGRAGLLGRALDYASFYLSAFLVLLRLTAKGDVIVAKTDPPLISVICGLVAVLRGAALVNWI 134          
BLAST of mRNA_M-pyrifera_M_contig113391.2800.1 vs. uniprot
Match: A0A2S5MGJ4_HYPSQ (Glycosyltransferase WbuB n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5MGJ4_HYPSQ)

HSP 1 Score: 150 bits (378), Expect = 5.370e-41
Identity = 73/131 (55.73%), Postives = 98/131 (74.81%), Query Frame = 1
Query:    7 KVVFINRFFYPDHSATSQLLTDLAFTLAENNLGKIYVITSRQKYDSPNAVLEQREIVNGVTIVRIWTSRFGRGSILGRAVDYLTFYFSAVISMLKIVQNNDIVVAKTDPPMISSAAWIVTTAKHARLVNWL 399
            +VVF+NR+FYPDHSATSQ+L+DLAF LAEN+  ++ VITS Q+YD P+A L   E +N + + R+ T+RFGR +ILGRA+DYLTFY SA   + ++ Q  D++VAKTDPPM+S     +  AK A L+NWL
Sbjct:    2 RVVFLNRYFYPDHSATSQMLSDLAFALAENDF-RVSVITSAQRYDDPDARLAHYETMNSIDVYRVSTTRFGRLNILGRAIDYLTFYASASRKLWQLAQAGDVIVAKTDPPMLSVIVAPIARAKRASLINWL 131          
BLAST of mRNA_M-pyrifera_M_contig113391.2800.1 vs. uniprot
Match: A0A831RSZ7_9GAMM (Glycosyltransferase WbuB n=1 Tax=Thiolapillus brandeum TaxID=1076588 RepID=A0A831RSZ7_9GAMM)

HSP 1 Score: 149 bits (376), Expect = 8.460e-41
Identity = 73/131 (55.73%), Postives = 95/131 (72.52%), Query Frame = 1
Query:    7 KVVFINRFFYPDHSATSQLLTDLAFTLAENNLGKIYVITSRQKYDSPNAVLEQREIVNGVTIVRIWTSRFGRGSILGRAVDYLTFYFSAVISMLKIVQNNDIVVAKTDPPMISSAAWIVTTAKHARLVNWL 399
            K++FINR+F+PDHSATSQLL DLAF LA  ++ ++ VI+SRQ YD P A L  RE + GV + R+WTS FGR +++GRA+DY+TFYFS +I +L      DI+VAKTDPP+IS  A      K A LVNW+
Sbjct:    2 KIIFINRYFFPDHSATSQLLGDLAFDLAGGDV-RVMVISSRQIYDDPAARLPAREQIRGVDVSRVWTSSFGRAALVGRAIDYITFYFSVLIRLLLEAGKGDIIVAKTDPPLISVVACFAAKRKGANLVNWV 131          
BLAST of mRNA_M-pyrifera_M_contig113391.2800.1 vs. uniprot
Match: UPI0003AA4D6E (glycosyltransferase family 4 protein n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI0003AA4D6E)

HSP 1 Score: 149 bits (377), Expect = 1.040e-40
Identity = 70/129 (54.26%), Postives = 95/129 (73.64%), Query Frame = 1
Query:   13 VFINRFFYPDHSATSQLLTDLAFTLAENNLGKIYVITSRQKYDSPNAVLEQREIVNGVTIVRIWTSRFGRGSILGRAVDYLTFYFSAVISMLKIVQNNDIVVAKTDPPMISSAAWIVTTAKHARLVNWL 399
            +F+NRFF+PDHSATSQ+L+DLAF LA     +I VITSRQ+Y+  N  L  RE++NGV + R+WTSRFGR +++GRAVDY TFY SA   + ++ +  D++VAKTDPPM+S     +   + A+LVNWL
Sbjct:    9 IFLNRFFHPDHSATSQILSDLAFELARGGR-RIVVITSRQRYEDTNERLPPREVINGVEVHRVWTSRFGRSNLVGRAVDYATFYLSATWRLWRLARKGDVIVAKTDPPMLSILVAPIAKLRRAKLVNWL 136          
BLAST of mRNA_M-pyrifera_M_contig113391.2800.1 vs. uniprot
Match: UPI001BBCDB4F (Glycosyltransferase family 4 protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=UPI001BBCDB4F)

HSP 1 Score: 149 bits (375), Expect = 1.080e-40
Identity = 72/132 (54.55%), Postives = 100/132 (75.76%), Query Frame = 1
Query:    7 KVVFINRFFYPDHSATSQLLTDLAFTLAE-NNLGKIYVITSRQKYDSPNAVLEQREIVNGVTIVRIWTSRFGRGSILGRAVDYLTFYFSAVISMLKIVQNNDIVVAKTDPPMISSAAWIVTTAKHARLVNWL 399
            K++FINR+FYPDHSATSQ+L+DLAF LA+ +N   I+++TSRQ+YD   A L   E++  V + RI T+RFGR ++ GRA+DYL+FY S+ + +LK+ Q  D ++AKTDPP+IS  A +V+T K A LVNWL
Sbjct:    8 KLIFINRYFYPDHSATSQMLSDLAFGLAKLDNRQSIHIVTSRQRYDDAAARLPAYEVIQDVHVHRIATTRFGRQNLPGRAIDYLSFYLSSFVCLLKLAQKGDTLIAKTDPPLISVVAALVSTIKRAHLVNWL 139          
BLAST of mRNA_M-pyrifera_M_contig113391.2800.1 vs. uniprot
Match: UPI00084A17AC (glycosyltransferase family 4 protein n=1 Tax=Candidatus Marithrix sp. Canyon 246 TaxID=1827136 RepID=UPI00084A17AC)

HSP 1 Score: 147 bits (372), Expect = 2.720e-40
Identity = 71/131 (54.20%), Postives = 94/131 (71.76%), Query Frame = 1
Query:    7 KVVFINRFFYPDHSATSQLLTDLAFTLAENNLGKIYVITSRQKYDSPNAVLEQREIVNGVTIVRIWTSRFGRGSILGRAVDYLTFYFSAVISMLKIVQNNDIVVAKTDPPMISSAAWIVTTAKHARLVNWL 399
            K++FINR+FYPD SATSQLLTDLAF L+++    I++ITS Q+YD P   L   EI N + I R+WT+RFGR  +LGRAVDYL+FYFSA   + ++    D+V+AKTDPP IS  A ++   + A L+NWL
Sbjct:    2 KIIFINRYFYPDQSATSQLLTDLAFDLSQDK--NIHIITSSQRYDDPKQKLPPFEIKNSIQIHRLWTTRFGRQRLLGRAVDYLSFYFSAAWRLWRLTSKADVVIAKTDPPFISVVAAVIVKLRGATLINWL 130          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113391.2800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000A5AF6822.010e-4454.20glycosyltransferase family 4 protein n=1 Tax=Methy... [more]
UPI00040827462.450e-4254.14glycosyltransferase family 4 protein n=1 Tax=Methy... [more]
Q609R1_METCA3.680e-4156.49Putative colanic acid biosynthesis glycosyl transf... [more]
A0A7T0JMJ8_9GAMM3.680e-4154.55Glycosyltransferase family 4 protein n=1 Tax=Methy... [more]
UPI00098B9AF23.690e-4153.38glycosyltransferase family 4 protein n=1 Tax=uncla... [more]
A0A2S5MGJ4_HYPSQ5.370e-4155.73Glycosyltransferase WbuB n=1 Tax=Hyphomicrobium sp... [more]
A0A831RSZ7_9GAMM8.460e-4155.73Glycosyltransferase WbuB n=1 Tax=Thiolapillus bran... [more]
UPI0003AA4D6E1.040e-4054.26glycosyltransferase family 4 protein n=1 Tax=Hypho... [more]
UPI001BBCDB4F1.080e-4054.55Glycosyltransferase family 4 protein n=1 Tax=Bacte... [more]
UPI00084A17AC2.720e-4054.20glycosyltransferase family 4 protein n=1 Tax=Candi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113391contigM-pyrifera_M_contig113391:179..577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score149.4
Seed ortholog evalue1.2e-33
Seed eggNOG ortholog243233.MCA1168
Preferred namewbjE
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glycosyl transferase 4-like domain
EggNOG OGs1MY5T@1224,1RS9J@1236,1XFU5@135618,COG0438@1,COG0438@2
COG Functional cat.H
Best tax levelMethylococcales
Best eggNOG OGNA|NA|NA
Exons1
Model size399
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815649.0897746-CDS-M-pyrifera_M_contig113391:178..5771622815649.0897746-CDS-M-pyrifera_M_contig113391:178..577Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113391 179..577 +
1692277504.4431674-CDS-M-pyrifera_M_contig113391:178..5771692277504.4431674-CDS-M-pyrifera_M_contig113391:178..577Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113391 179..577 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113391.2800.1prot_M-pyrifera_M_contig113391.2800.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113391 179..577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113391.2800.1

>prot_M-pyrifera_M_contig113391.2800.1 ID=prot_M-pyrifera_M_contig113391.2800.1|Name=mRNA_M-pyrifera_M_contig113391.2800.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
NRKVVFINRFFYPDHSATSQLLTDLAFTLAENNLGKIYVITSRQKYDSPN
AVLEQREIVNGVTIVRIWTSRFGRGSILGRAVDYLTFYFSAVISMLKIVQ
NNDIVVAKTDPPMISSAAWIVTTAKHARLVNWL
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mRNA from alignment at M-pyrifera_M_contig113391:179..577+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113391.2800.1 ID=mRNA_M-pyrifera_M_contig113391.2800.1|Name=mRNA_M-pyrifera_M_contig113391.2800.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=399bp|location=Sequence derived from alignment at M-pyrifera_M_contig113391:179..577+ (Macrocystis pyrifera P11B4 male)
AATAGGAAAGTAGTGTTCATCAATCGATTTTTCTATCCCGACCACTCGGC AACGAGCCAATTACTCACCGATTTAGCATTTACTCTCGCCGAGAACAACC TTGGCAAAATCTACGTAATAACCAGTCGCCAAAAATACGATTCGCCGAAC GCCGTATTAGAGCAAAGGGAAATTGTCAATGGAGTCACCATAGTCCGCAT TTGGACCAGCCGATTTGGCCGAGGGTCGATTTTAGGGCGTGCGGTGGACT ATCTAACATTTTATTTTTCGGCAGTAATCTCCATGCTGAAAATAGTGCAA AACAATGACATAGTTGTGGCAAAAACGGACCCACCGATGATTTCATCTGC CGCATGGATCGTAACGACGGCTAAGCACGCTCGATTAGTAAATTGGCTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113391:179..577+

>mRNA_M-pyrifera_M_contig113391.2800.1 ID=mRNA_M-pyrifera_M_contig113391.2800.1|Name=mRNA_M-pyrifera_M_contig113391.2800.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig113391:179..577+ (Macrocystis pyrifera P11B4 male)
AATAGGAAAGTAGTGTTCATCAATCGATTTTTCTATCCCGACCACTCGGC
AACGAGCCAATTACTCACCGATTTAGCATTTACTCTCGCCGAGAACAACC
TTGGCAAAATCTACGTAATAACCAGTCGCCAAAAATACGATTCGCCGAAC
GCCGTATTAGAGCAAAGGGAAATTGTCAATGGAGTCACCATAGTCCGCAT
TTGGACCAGCCGATTTGGCCGAGGGTCGATTTTAGGGCGTGCGGTGGACT
ATCTAACATTTTATTTTTCGGCAGTAATCTCCATGCTGAAAATAGTGCAA
AACAATGACATAGTTGTGGCAAAAACGGACCCACCGATGATTTCATCTGC
CGCATGGATCGTAACGACGGCTAAGCACGCTCGATTAGTAAATTGGCTAA
ATAGGAAAGTAGTGTTCATCAATCGATTTTTCTATCCCGACCACTCGGCA
ACGAGCCAATTACTCACCGATTTAGCATTTACTCTCGCCGAGAACAACCT
TGGCAAAATCTACGTAATAACCAGTCGCCAAAAATACGATTCGCCGAACG
CCGTATTAGAGCAAAGGGAAATTGTCAATGGAGTCACCATAGTCCGCATT
TGGACCAGCCGATTTGGCCGAGGGTCGATTTTAGGGCGTGCGGTGGACTA
TCTAACATTTTATTTTTCGGCAGTAATCTCCATGCTGAAAATAGTGCAAA
ACAATGACATAGTTGTGGCAAAAACGGACCCACCGATGATTTCATCTGCC
GCATGGATCGTAACGACGGCTAAGCACGCTCGATTAGTAAATTGGCTA
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