mRNA_M-pyrifera_M_contig113389.2799.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113389.2799.1
Unique NamemRNA_M-pyrifera_M_contig113389.2799.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113389.2799.1 vs. uniprot
Match: A0A518IT66_9BACT (Site-specific DNA-methyltransferase (adenine-specific) n=1 Tax=Rosistilla oblonga TaxID=2527990 RepID=A0A518IT66_9BACT)

HSP 1 Score: 68.9 bits (167), Expect = 1.950e-12
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:   31 ENYDERFELPNGISAVRRLSGLKTPSITESLFVRAAVD 144
            E YDERFELPNG SAVRRLSG +TPSITESLFVRAAVD
Sbjct:  315 EIYDERFELPNGTSAVRRLSGRQTPSITESLFVRAAVD 352
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BLAST of mRNA_M-pyrifera_M_contig113389.2799.1 vs. uniprot
Match: M2B738_9BACT (Uncharacterized protein n=1 Tax=Rhodopirellula europaea 6C TaxID=1263867 RepID=M2B738_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 4.420e-10
Identity = 28/38 (73.68%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   31 ENYDERFELPNGISAVRRLSGLKTPSITESLFVRAAVD 144
            E YDERFEL NG  AVRRL GL+TPS+TESLF RA  D
Sbjct:   13 EIYDERFELSNGTIAVRRLGGLETPSVTESLFDRAGYD 50
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113389.2799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A518IT66_9BACT1.950e-1289.47Site-specific DNA-methyltransferase (adenine-speci... [more]
M2B738_9BACT4.420e-1073.68Uncharacterized protein n=1 Tax=Rhodopirellula eur... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113389contigM-pyrifera_M_contig113389:158..307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815649.0534203-CDS-M-pyrifera_M_contig113389:157..3071622815649.0534203-CDS-M-pyrifera_M_contig113389:157..307Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113389 158..307 +
1692277504.430689-CDS-M-pyrifera_M_contig113389:157..3071692277504.430689-CDS-M-pyrifera_M_contig113389:157..307Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113389 158..307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113389.2799.1prot_M-pyrifera_M_contig113389.2799.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113389 158..307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113389.2799.1

>prot_M-pyrifera_M_contig113389.2799.1 ID=prot_M-pyrifera_M_contig113389.2799.1|Name=mRNA_M-pyrifera_M_contig113389.2799.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=50bp
MHPQQQGIALENYDERFELPNGISAVRRLSGLKTPSITESLFVRAAVDT*
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mRNA from alignment at M-pyrifera_M_contig113389:158..307+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113389.2799.1 ID=mRNA_M-pyrifera_M_contig113389.2799.1|Name=mRNA_M-pyrifera_M_contig113389.2799.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=150bp|location=Sequence derived from alignment at M-pyrifera_M_contig113389:158..307+ (Macrocystis pyrifera P11B4 male)
ATGCATCCGCAACAGCAGGGGATTGCGCTCGAAAACTACGACGAGCGATT
TGAACTACCCAACGGGATAAGTGCAGTCAGGCGATTGAGCGGACTGAAGA
CGCCTTCTATCACGGAGTCGCTGTTCGTTCGTGCAGCCGTCGATACATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113389:158..307+

>mRNA_M-pyrifera_M_contig113389.2799.1 ID=mRNA_M-pyrifera_M_contig113389.2799.1|Name=mRNA_M-pyrifera_M_contig113389.2799.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig113389:158..307+ (Macrocystis pyrifera P11B4 male)
ATGCATCCGCAACAGCAGGGGATTGCGCTCGAAAACTACGACGAGCGATT
TGAACTACCCAACGGGATAAGTGCAGTCAGGCGATTGAGCGGACTGAAGA
CGCCTTCTATCACGGAGTCGCTGTTCGTTCGTGCAGCCGTCGATACATGA
ATGCATCCGCAACAGCAGGGGATTGCGCTCGAAAACTACGACGAGCGATT
TGAACTACCCAACGGGATAAGTGCAGTCAGGCGATTGAGCGGACTGAAGA
CGCCTTCTATCACGGAGTCGCTGTTCGTTCGTGCAGCCGTCGATACATGA
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