mRNA_M-pyrifera_M_contig113352.2791.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113352.2791.1
Unique NamemRNA_M-pyrifera_M_contig113352.2791.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113352.2791.1 vs. uniprot
Match: A0A5C6AJX2_9BACT (Uncharacterized protein n=1 Tax=Botrimarina colliarenosi TaxID=2528001 RepID=A0A5C6AJX2_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 6.720e-8
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 NATSGASEYDFLLDNFMVEIFGSNEGGDNCPGDANGDGTVDLLDLDI 141
            NATSGASE+DFLLDNF+VE+ GSN G    PGD NGD  VD  D  +
Sbjct:  409 NATSGASEFDFLLDNFLVEVNGSNAG---LPGDYNGDNVVDAADYTV 452
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BLAST of mRNA_M-pyrifera_M_contig113352.2791.1 vs. uniprot
Match: A0A517THN1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium MalM25 TaxID=2527998 RepID=A0A517THN1_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 1.510e-6
Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    1 NATSGASEYDFLLDNFMVEIFGSNEGGDNCPGDANGDGTVDLLDLDILGSNFGS 162
            NA+SG  E+DF++DNF VE+ GSNE     PGD NGD TVD  D  +   N G+
Sbjct:  398 NASSGGGEFDFIMDNFTVEVEGSNEA---LPGDFNGDLTVDAADYTVWRDNLGA 448
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113352.2791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5C6AJX2_9BACT6.720e-863.83Uncharacterized protein n=1 Tax=Botrimarina collia... [more]
A0A517THN1_9BACT1.510e-651.85Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113352contigM-pyrifera_M_contig113352:149..493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815648.7453632-CDS-M-pyrifera_M_contig113352:148..4931622815648.7453632-CDS-M-pyrifera_M_contig113352:148..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113352 149..493 +
1692277504.3272643-CDS-M-pyrifera_M_contig113352:148..4931692277504.3272643-CDS-M-pyrifera_M_contig113352:148..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113352 149..493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113352.2791.1prot_M-pyrifera_M_contig113352.2791.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113352 149..493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113352.2791.1

>prot_M-pyrifera_M_contig113352.2791.1 ID=prot_M-pyrifera_M_contig113352.2791.1|Name=mRNA_M-pyrifera_M_contig113352.2791.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
NATSGASEYDFLLDNFMVEIFGSNEGGDNCPGDANGDGTVDLLDLDILGS
NFGSTGTTFAQGDFNEDGTVDLLDLDILGSNFGMSKSSTSIPEPTSLLMI
ASVALATALRRRAS*
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mRNA from alignment at M-pyrifera_M_contig113352:149..493+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113352.2791.1 ID=mRNA_M-pyrifera_M_contig113352.2791.1|Name=mRNA_M-pyrifera_M_contig113352.2791.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig113352:149..493+ (Macrocystis pyrifera P11B4 male)
AACGCGACAAGCGGTGCGAGCGAGTACGACTTCCTCCTCGACAACTTCAT
GGTCGAGATCTTCGGCAGCAACGAGGGTGGCGATAACTGCCCCGGCGACG
CCAACGGCGACGGCACCGTGGACCTGCTCGACCTCGACATCCTCGGAAGC
AACTTCGGCAGCACGGGCACGACCTTCGCTCAGGGCGACTTCAACGAGGA
CGGCACGGTCGACCTGCTCGACTTGGACATCCTCGGAAGCAACTTCGGCA
TGAGCAAGTCGTCCACGTCGATCCCCGAGCCGACTTCGCTGCTGATGATC
GCATCGGTCGCCTTAGCGACCGCCCTCCGTCGCCGGGCCTCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113352:149..493+

>mRNA_M-pyrifera_M_contig113352.2791.1 ID=mRNA_M-pyrifera_M_contig113352.2791.1|Name=mRNA_M-pyrifera_M_contig113352.2791.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig113352:149..493+ (Macrocystis pyrifera P11B4 male)
AACGCGACAAGCGGTGCGAGCGAGTACGACTTCCTCCTCGACAACTTCAT
GGTCGAGATCTTCGGCAGCAACGAGGGTGGCGATAACTGCCCCGGCGACG
CCAACGGCGACGGCACCGTGGACCTGCTCGACCTCGACATCCTCGGAAGC
AACTTCGGCAGCACGGGCACGACCTTCGCTCAGGGCGACTTCAACGAGGA
CGGCACGGTCGACCTGCTCGACTTGGACATCCTCGGAAGCAACTTCGGCA
TGAGCAAGTCGTCCACGTCGATCCCCGAGCCGACTTCGCTGCTGATGATC
GCATCGGTCGCCTTAGCGACCGCCCTCCGTCGCCGGGCCTCGTGAAACGC
GACAAGCGGTGCGAGCGAGTACGACTTCCTCCTCGACAACTTCATGGTCG
AGATCTTCGGCAGCAACGAGGGTGGCGATAACTGCCCCGGCGACGCCAAC
GGCGACGGCACCGTGGACCTGCTCGACCTCGACATCCTCGGAAGCAACTT
CGGCAGCACGGGCACGACCTTCGCTCAGGGCGACTTCAACGAGGACGGCA
CGGTCGACCTGCTCGACTTGGACATCCTCGGAAGCAACTTCGGCATGAGC
AAGTCGTCCACGTCGATCCCCGAGCCGACTTCGCTGCTGATGATCGCATC
GGTCGCCTTAGCGACCGCCCTCCGTCGCCGGGCCTCGTGA
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