mRNA_M-pyrifera_M_contig11332.2782.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11332.2782.1
Unique NamemRNA_M-pyrifera_M_contig11332.2782.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig11332.2782.1 vs. uniprot
Match: A0A6H5JZ97_9PHAE (CS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZ97_9PHAE)

HSP 1 Score: 375 bits (963), Expect = 1.650e-124
Identity = 250/409 (61.12%), Postives = 272/409 (66.50%), Query Frame = 1
Query:    4 KFDDVLKNLTGQAGSLEALLGVFFSFLHRNTDFYVTFDPATTTRPGMGFPPGKAEQLLLRAFNSLPFKQYGGQQQXXXXXXXXXXXXXXXXXXXXXXXXPH----SRXXXXXXXXXXXXXXPGEVVDGESXXXXXXXXXXXXXXXXXXXQGSESSPNATCREG-VGPSSSLRTAPSPQAVTSVAPAAFESNNTRVRYTDSGKQVPIGNGGVTPKYYWTQTVSEATVYVDVPPGTRSKDVYCRIQPRRLKLRVRGAGATASPTTMVTSTAXXXXXXXAAPNGSAGGAAPEDGEDVIIDGELPSAVSREGSMWSLNDGKTVVISFEKATRTWWKSVVEGDPEIDTSKVDSTSKISEYDEETQSTIRKIMFDERQKALGLPTSDQISSDSLLEKAKSLPGSPFLPGGALFSG 1215
            KFDDVL+NL GQAGSLEALLG FFSFLHRNTDFYVTFDP  T R GMGFP GKAE+LLLRAF S P+K YG Q +                        P     SR              P        XXXXXXXXXXXXXXXXXXX         T  EG V PSS            +  PAA  +    VRYT+ GKQVPIGNGGVT +YYWTQTV+EATVYVDVPPGTRSKDV C IQPR LKL+VRGAG             XXXXXXX A             EDV+ DGELPSAVSRE SMWSLNDGKTVVISFEK T++WWKSVVEGDPEIDTSKVDST+KISEYD ETQ  IRKIMFD+RQK+LGLPTSD++++D+LLE+AK LPGSPFLPGG LF G
Sbjct:    7 KFDDVLRNLAGQAGSLEALLGAFFSFLHRNTDFYVTFDPTKTARAGMGFPAGKAEKLLLRAFRSFPYKSYGVQDEQLPAAAGRGRGPSTAKETAATKIGPAGGSTSRKNDTGVDTALGSGGPAXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXTPGEGSVAPSSXXXXXXXXPTTANGKPAA--AGCISVRYTEDGKQVPIGNGGVTDRYYWTQTVNEATVYVDVPPGTRSKDVTCIIQPRWLKLKVRGAGTAXXXXXXXXXXXXXXXXXXGA-------------EDVVFDGELPSAVSREDSMWSLNDGKTVVISFEKTTKSWWKSVVEGDPEIDTSKVDSTTKISEYDGETQGAIRKIMFDQRQKSLGLPTSDELNADALLERAKVLPGSPFLPGGVLFEG 394          
BLAST of mRNA_M-pyrifera_M_contig11332.2782.1 vs. uniprot
Match: A0A7S3XL32_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XL32_HETAK)

HSP 1 Score: 239 bits (611), Expect = 2.720e-72
Identity = 174/404 (43.07%), Postives = 223/404 (55.20%), Query Frame = 1
Query:    7 FDDVLKNLTGQAGSLEALLGVFFSFLHRNTDFYVTFDPATTTRPGMGFPPGKAEQLLLRAFNSLPFKQY----GGQQQXXXXXXXXXXXXXXXXXXXXXXXXPHSRXXXXXXXXXXXXXXPGEVVDGESXXXXXXXXXXXXXXXXXXXQGSESSPNATC-REGVGPSSSLRTAPSPQAVTSVAPAAFESNNTRVRYTDSGKQVPIGNGGVTPKYYWTQTVSEATVYVDVPPGTRSKDVYCRIQPRRLKLRVRGAGATASPTTMVTSTAXXXXXXXAAPNGSAGGAAPEDGEDVIIDGELPSAVSREGSMWSLNDGKTVVISFEKATRTWWKSVVEGDPEIDTSKVDSTSKISEYDEETQSTIRKIMFDERQKALGLPTSDQISSDSLLEKAKSLPGSPFLPGGA 1203
            +D+VL  L GQ G ++ LL  FFSFLHR TDFYV        +  MGF  G AE++LL++F   P+K           XXXXXXXXXXXXXXXXXXXXXXXX    XXX           P ++ D +                    Q     P+A    E  G      TAP+P         A       VRYTD G Q+PIGNGG+T  YYWTQT+ E T+YVD+P GTR+KD+   I P  +K++++                                       + II+GE P   +   SMW+L D +T+VI+ EK T+TWW+SV++GDPEID  KVDST+K+ +YDEETQ+TIRKIMFD++QKALGLPTS+++    +LE+AK   GSPFLPGGA
Sbjct:    9 YDNVLLGLAGQCGGIQPLLAAFFSFLHRKTDFYVVHAD-DDNQAKMGFRAGAAEKILLQSFRKFPYKPMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPADKAAPVQHEPDDINDSQE-------------------QKKPDGPSAAAAHENAGDQLQRGTAPAPV-------PASSGPGLEVRYTDEGLQIPIGNGGITENYYWTQTLGEVTLYVDIPAGTRAKDLQVEISPSSIKIKLKAES------------------------------------EAIIEGEFPHTANASESMWTLEDNRTLVITLEKVTQTWWRSVIKGDPEIDAQKVDSTTKVEDYDEETQATIRKIMFDQKQKALGLPTSEELKMQGILEQAKYAKGSPFLPGGA 349          
BLAST of mRNA_M-pyrifera_M_contig11332.2782.1 vs. uniprot
Match: A0A7S2SV46_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV46_9STRA)

HSP 1 Score: 236 bits (601), Expect = 6.890e-71
Identity = 161/400 (40.25%), Postives = 207/400 (51.75%), Query Frame = 1
Query:   10 DDVLKNLTGQAGSLEALLGVFFSFLHRNTDFYVTFDPATTTRPGMGFPPGKAEQLLLRAFNSLPFKQYGGQQQXXXXXXXXXXXXXXXXXXXXXXXXPHSRXXXXXXXXXXXXXXPGEVVDGESXXXXXXXXXXXXXXXXXXXQGSESSPNATCREGVGPSSSLRTAPSPQAVTSVAPAAFESNNTRVRYTDSGKQVPIGNGGVTPKYYWTQTVSEATVYVDVPPGTRSKDVYCRIQPRRLKLRVRGAGATASPTTMVTSTAXXXXXXXAAPNGSAGGAAPEDGEDVIIDGELPSAVSREGSMWSLNDGK-----TVVISFEKATRTWWKSVVEGDPEIDTSKVDSTSKISEYDEETQSTIRKIMFDERQKALGLPTSDQISSDSLLEKAKSLPGSPFLP 1194
            D++L +L  + G +E LLG FFSFLHR TDFYV +DP +  +  MGFP G +E++LLR F S P K Y  +                          P S               P EV     XXXXXXXXXXX                   R   GP +S   A  P A T      F      V+YTD GKQVPIGNGGVT +Y WTQT+ E TVY+ VP GTR+ D+ C I P++L+L+++                                       + I+DG++P  V  + SMW + D       TVVI+ +K  +TWW  VV GDP ID + VDST KI EYD ETQ  IRKIMFD++QK+LGLPTSD+++++++LEKAK +PGSPFLP
Sbjct:   14 DELLMSLASKLGGIEPLLGTFFSFLHRKTDFYVQYDPKSVPQARMGFPAGVSEKMLLRKFRSFPTKDYAAE-------VARLEEAQGLRRPAGPKLRPSSEARRAAQKVPVAPSEPMEVAAXXXXXXXXXXXXXX------------------ARTVTGPDASSSQA-GPAAGTPAPKMPFP----EVKYTDKGKQVPIGNGGVTSRYTWTQTLYEVTVYIPVPQGTRAADILCTIAPKKLQLKLKKE------------------------------------PEWILDGDMPETVRPDESMWVVEDDPAGDFGTVVITLDKIKKTWWDVVVVGDPAIDATMVDSTCKIDEYDPETQGAIRKIMFDQKQKSLGLPTSDELTTEAILEKAKYMPGSPFLP 347          
BLAST of mRNA_M-pyrifera_M_contig11332.2782.1 vs. uniprot
Match: A0A835Z5P8_9STRA (Nuclear migration protein nudC-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P8_9STRA)

HSP 1 Score: 195 bits (496), Expect = 2.730e-56
Identity = 135/407 (33.17%), Postives = 181/407 (44.47%), Query Frame = 1
Query:    4 KFDDVLKNLTGQAGSLEALLGVFFSFLHRNTDFYVTFDPA--TTTRPGMGFPPGKAEQLLLRAFNSLPFKQYGGQQQXXXXXXXXXXXXXXXXXXXXXXXXPHSRXXXXXXXXXXXXXXPGEVVDGESXXXXXXXXXXXXXXXXXXXQGSESSPNATCREGVGPSSSLRTAPSPQAVTSVAPAAFESNNTRVRYTDSGKQVPIGNGGVTPK--YYWTQTVSEATVYVDVPPGTRSKDVYCRIQPRRLKLRVRGAGATASPTTMVTSTAXXXXXXXAAPNGSAGGAAPEDGEDVIIDGELP-SAVSREGSMWSLN-DGKTVVISFEKATRTWWKSVVEGDPEIDTSKVDSTSKISEYDEETQSTIRKIMFDERQKALGLPTSDQISSDSLLEKAKSLPGSPFLPGGAL 1206
            ++D++L  + GQ GS++ LL   FSFLHR TDFYV +DPA   + RP MGF  GKAE+LLL+AF S                                                          DG                              T ++   P +                                KQ P+GNGG  P   Y WTQT+ E TVYVDVP GTR +D+ C I  R L  +++GAG   +                                      E+P +A++   S+W+L+ D   +V++ EK  +TWW   +EG PEIDTSKVDST K+ +YDE+TQ+ IRKIMFD++QK +GLPTSD++++  LLEKAK  PGSPF+PGG L
Sbjct:    6 RYDELLMTMAGQLGSIDGLLRTLFSFLHRKTDFYVEWDPALLASERPTMGFVSGKAEELLLQAFQS--------------------------------------------------------TTDGGG---------------------------VTAQQSQQPGT--------------------------------KQTPVGNGGACPDHGYCWTQTLQEVTVYVDVPKGTRGRDMVCDIGTRSLSCKLKGAGGQQASK------------------------------------EIPFTALAARRSLWNLDSDDGVLVVTLEKVAKTWWACALEGHPEIDTSKVDSTCKVGDYDEDTQAAIRKIMFDQKQKRMGLPTSDELTASDLLEKAKLAPGSPFMPGGPL 261          
BLAST of mRNA_M-pyrifera_M_contig11332.2782.1 vs. uniprot
Match: A0A2D4C6K1_PYTIN (CS domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C6K1_PYTIN)

HSP 1 Score: 178 bits (451), Expect = 3.900e-49
Identity = 92/215 (42.79%), Postives = 127/215 (59.07%), Query Frame = 1
Query:  544 AAFESNNTRVRYTDSGKQVPIGNGGVTPKYYWTQTVSEATVYVDVPPGTRSKDVYCRIQPRRLKLRVRGAGATASPTTMVTSTAXXXXXXXAAPNGSAGGAAPEDGEDVIIDGELPSAVSREGSMWSLNDGKTVVISFEKATRTWWKSVVEGDPEIDTSKVDSTSKISEYDEETQSTIRKIMFDERQKALGLPTSDQISSDSLLEKAKSLPGSPF 1188
            A  +     V+ TD GKQ+PIGNGG+T KY WTQT+ + TV V VP GT +K + C I+P+RL++ VR +   ++    V                            V++DGE P  +  + S+WSL +G T+ +S EK  +TWW SV+ GD EIDTS+VDST  I EYD  TQ  IRK MFD++Q+ LGLPTS+++++  LL KA+  P SP 
Sbjct:  124 APMQQTQAPVKLTDKGKQLPIGNGGITDKYTWTQTLEDVTVLVPVPEGTSAKQIECDIRPQRLRVAVRSSSTHSTKNPSV----------------------------VLLDGEFPEKIRADESLWSLENGHTLELSLEKIRQTWWASVLRGDAEIDTSEVDSTRAIGEYDAATQGAIRKAMFDQQQRQLGLPTSEELATQELLAKARLAPNSPI 310          
BLAST of mRNA_M-pyrifera_M_contig11332.2782.1 vs. uniprot
Match: A0A6S8EVI0_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8EVI0_9STRA)

HSP 1 Score: 166 bits (419), Expect = 3.720e-45
Identity = 89/209 (42.58%), Postives = 120/209 (57.42%), Query Frame = 1
Query:  574 RYTDSGKQVPIGNGGVTPKYYWTQTVSEATVYVDVPPGTRSKDVYCRIQPRRLKLRVRGAGATASPTTMVTSTAXXXXXXXAAPNGSAGGAAPEDGEDVIIDGELPS--AVSREGSMWSLNDGK-TVVISFEKATRTWWKSVVEGDPEIDTSKVDSTSKISEYDEETQSTIRKIMFDERQKALGLPTSDQISSDSLLEKAKSLPGSPFL 1191
            RY   GKQVP GNGG    YYW Q++ E T+YV VPPGT SKD+ C I P  +++ V+G                                     + +I++G  P    V+     WS  + + T+ IS +K  +TWW SVV+G+PEIDT  VDS  K+ EYD+ETQ+TIR+IMFD+ QK  GLPTS +I+++ +LEKAK + GSPFL
Sbjct:   71 RYNKDGKQVPEGNGGKGENYYWQQSLYEITIYVQVPPGTNSKDIVCEIDPGTIRVGVKG-------------------------------------KSLILEGNYPENYKVNTGECFWSFEEAENTITISLDKREQTWWPSVVQGEPEIDTQNVDSKRKVDEYDDETQATIRRIMFDQNQKRKGLPTSGEITTNGVLEKAKYIKGSPFL 242          
BLAST of mRNA_M-pyrifera_M_contig11332.2782.1 vs. uniprot
Match: A0A7R9U371_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U371_9STRA)

HSP 1 Score: 168 bits (426), Expect = 4.070e-45
Identity = 87/210 (41.43%), Postives = 125/210 (59.52%), Query Frame = 1
Query:  571 VRYTDSGKQVPIGNGGVTPKYYWTQTVSEATVYVDVPPGTRSKDVYCRIQPRRLKLRVRGAGATASPTTMVTSTAXXXXXXXAAPNGSAGGAAPEDGEDVIIDGELPSAVSREGSMWSLNDGKTVVISFEKATRTWWKSVVEGDPEIDTSKVDSTSKISEYDEETQSTIRKIMFDERQKALGLPTSDQISSDSLLEKAKSLPGSPFLPGG 1200
            ++  + GKQ+P+ NGG T KY W+QT+ EAT++V +P G R++D+   I P  L +R +                                      +DVI+ G+ P  +  + S+W++++G  + IS +KA R WW S + GD EIDT++VDS +KI +YD+ETQ  IRKIMFD++QKALGLPTSD++    L E+AK  PGSPFLPGG
Sbjct:  162 LKVNEDGKQIPVNNGGATDKYVWSQTLGEATMHVPLPEGMRARDIRVEILPSGLTVRKKAD------------------------------------DDVILAGQWPRRIQGDESVWTVDNG-ILTISLDKADRAWWSSALVGDVEIDTTQVDSRTKIDDYDDETQGVIRKIMFDQKQKALGLPTSDELEKQELFERAKFAPGSPFLPGG 334          
BLAST of mRNA_M-pyrifera_M_contig11332.2782.1 vs. uniprot
Match: A0A7S3H6E3_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H6E3_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.050e-43
Identity = 88/209 (42.11%), Postives = 117/209 (55.98%), Query Frame = 1
Query:  577 YTDSGKQVPIGNGGVTPKYYWTQTVSEATVYVDVPPGTRSKDVYCRIQPRRLKLRVRGAGATASPTTMVTSTAXXXXXXXAAPNGSAGGAAPEDGEDVIIDGELPSAVSREGSMWSLNDG-----KTVVISFEKATRTWWKSVVEGDPEIDTSKVDSTSKISEYDEETQSTIRKIMFDERQKALGLPTSDQISSDSLLEKAKSLPGSPF 1188
            YT  GKQ PIGNGG+   YYWTQT+ + TVY+D   G R KDV C I+ + LK+ +RG                                      +V++DG L   V  + SMW+++       + +VI+ EK   TWWK V+ G  EIDT+KVDST  I EYD+ TQ+ IRKIMFD++QK LG PTS++ + D+LL KA  +PGSP 
Sbjct:  153 YTPDGKQYPIGNGGIGENYYWTQTLRDVTVYIDTAAGCRGKDVKCDIKAQALKVAIRG--------------------------------------EVVVDGALEGVVKTQESMWTISTTTDSAIQQIVITLEKTRPTWWKHVISGHEEIDTTKVDSTQNIGEYDDNTQAAIRKIMFDQKQKLLGQPTSEESAMDALLAKASLVPGSPI 323          
BLAST of mRNA_M-pyrifera_M_contig11332.2782.1 vs. uniprot
Match: A0A7S3NQ58_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NQ58_9STRA)

HSP 1 Score: 161 bits (408), Expect = 5.420e-43
Identity = 91/215 (42.33%), Postives = 124/215 (57.67%), Query Frame = 1
Query:  571 VRYTDSGKQVPIGNGGVTPKYYWTQTVSEATVYVDVPPGTRSKDVYCRIQPRRLKLRVRGAGATASPTTMVTSTAXXXXXXXAAPNGSAGGAAPEDGEDVIIDGELPSAVSREGSMWSL-----NDGKTVVISFEKATRTWWKSV-VEGDPE--IDTSKVDSTSKISEYDEETQSTIRKIMFDERQKALGLPTSDQISSDSLLEKAKSLPGSPFL 1191
            V+Y   GKQ+P+GNGGV   + WTQT++E T+Y +VP   +++D+ C+I   RL+L++                                      G    I     + ++ +GSMW+L     N+  ++V+S EK T TWW SV     P+  IDT+KVDS+ KI EYDE TQ+TIRKIMFD+RQKA GLPTSD+I ++ LLEK K LPGSPFL
Sbjct:  101 VQYNQDGKQIPVGNGGVAENHTWTQTLTETTIYFEVPSDIKARDITCKISSTRLELKI--------------------------------------GNGDHISDRFYAKIAEDGSMWTLDREEANNRASLVLSLEKVTETWWPSVFANAAPKELIDTTKVDSSKKIDEYDEYTQATIRKIMFDQRQKARGLPTSDEIQNNELLEKVKYLPGSPFL 277          
BLAST of mRNA_M-pyrifera_M_contig11332.2782.1 vs. uniprot
Match: B8BPW1_THAPS (CS domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BPW1_THAPS)

HSP 1 Score: 161 bits (407), Expect = 1.200e-41
Identity = 127/412 (30.83%), Postives = 180/412 (43.69%), Query Frame = 1
Query:   19 LKNLTGQAGSLEALLGVFFSFLHRNTDFYVTF--DPATTTRPGMGFPPGKAEQLLLRAFNSLPFKQYGGQQQXXXXXXXXXXXXXXXXXXXXXXXXPHSRXXXXXXXXXXXXXXPGEVVDGESXXXXXXXXXXXXXXXXXXXQGSESSPNATCREGVGPSSSLRTAPSPQAVTSVAPAAFESNNTRVRYTDSGKQVPIGNGGVTPKYYWTQTVSEATVYVDVPPGTRSKDVYCRIQPRRLKLRVRGAGATASPTTMVTSTAXXXXXXXAAPNGSAGGAAPEDGEDVIIDGELPSAVSREGSMWSLNDGK-----------TVVISFEKATRTWWKSVVEGDPEIDTSKVDSTSKISEYDEETQSTIRKIMFDERQKALGLPTSDQISSDSLLEKAKSLPGS--PFLPGGALF 1209
            L NL+G  G L  L   FFSFL+R TDFY     D +  +   MGF  G+AEQ+L+ +F   P ++ G ++                         P                 P   V+                      Q   +S  AT +     S ++ T  +   +TS  P   E+N   +RYTD GKQVP+GNGG   +Y WTQT+ E T+++ +P GTR+KD+   I    L +    A    S    V                  GG +P     V ++G L   V      W+L   K           T+ ++ +K  +TWW +V+ GDP IDT+ VDST  I  YDE+TQ+ IR+IMFD+RQ+ LGLP+SD+I  +     +    GS  P LP G  +
Sbjct:   30 LANLSG--GDLRKLFYAFFSFLNRRTDFYCILPDDGSGASGRNMGFKEGQAEQILIASFRQFPLRRVGNKKAP-----------------------PQKHDGTPSASNSVAADAPSAKVEVAESPKTITSTTSPSSEEVKAVQ--PASDEATTKSDNSNSETVDTNKAVATITSK-PKKDEANKNTIRYTDEGKQVPVGNGGSATRYVWTQTLEEVTIHIPLPEGTRAKDLNVDIAASTLSIHQTDAAFAKSDAAAVAGV-------------GGGGVSPS--SFVPLEGTLFGKVRPAECTWTLESTKSNNNDETHNMTTLQLTLDKIQKTWWSTVLSGDPIIDTTMVDSTRHIDTYDEKTQAQIRRIMFDQRQEQLGLPSSDKIMGEERSVSSGGDGGSKVPTLPSGVEY 398          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11332.2782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZ97_9PHAE1.650e-12461.12CS domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S3XL32_HETAK2.720e-7243.07Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2SV46_9STRA6.890e-7140.25Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835Z5P8_9STRA2.730e-5633.17Nuclear migration protein nudC-like protein n=1 Ta... [more]
A0A2D4C6K1_PYTIN3.900e-4942.79CS domain-containing protein n=2 Tax=Pythium insid... [more]
A0A6S8EVI0_9STRA3.720e-4542.58Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7R9U371_9STRA4.070e-4541.43Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3H6E3_9STRA1.050e-4342.11Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A7S3NQ58_9STRA5.420e-4342.33Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
B8BPW1_THAPS1.200e-4130.83CS domain-containing protein n=1 Tax=Thalassiosira... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11332contigM-pyrifera_M_contig11332:6154..8845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score376.3
Seed ortholog evalue1.8e-101
Seed eggNOG ortholog2880.D8LL35
Preferred nameNUDCD3
KEGG koko:K21867
KEGG TC1.A.1.4
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005856,GO:0005868,GO:0005875,GO:0006457,GO:0006810,GO:0006996,GO:0007097,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044380,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044782,GO:0046907,GO:0051082,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0060271,GO:0070727,GO:0070925,GO:0071539,GO:0071840,GO:0072698,GO:0120031,GO:0120036,GO:1902494,GO:1905508,GO:1905793
EggNOG free text desc.unfolded protein binding
EggNOG OGsKOG2265@1,KOG2265@2759
Ec32 ortholog descriptionHSP20-like chaperone
Ec32 orthologEc-26_003380.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons3
Model size1230
Cds size1230
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11332.2782.1prot_M-pyrifera_M_contig11332.2782.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11332 6154..8845 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815648.353004-CDS-M-pyrifera_M_contig11332:6153..63601622815648.353004-CDS-M-pyrifera_M_contig11332:6153..6360Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11332 6154..6360 -
1692277504.184095-CDS-M-pyrifera_M_contig11332:6153..63601692277504.184095-CDS-M-pyrifera_M_contig11332:6153..6360Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11332 6154..6360 -
1622815648.3676074-CDS-M-pyrifera_M_contig11332:7741..84321622815648.3676074-CDS-M-pyrifera_M_contig11332:7741..8432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11332 7742..8432 -
1692277504.194202-CDS-M-pyrifera_M_contig11332:7741..84321692277504.194202-CDS-M-pyrifera_M_contig11332:7741..8432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11332 7742..8432 -
1622815648.3814611-CDS-M-pyrifera_M_contig11332:8513..88451622815648.3814611-CDS-M-pyrifera_M_contig11332:8513..8845Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11332 8514..8845 -
1692277504.2023036-CDS-M-pyrifera_M_contig11332:8513..88451692277504.2023036-CDS-M-pyrifera_M_contig11332:8513..8845Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11332 8514..8845 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11332.2782.1

>prot_M-pyrifera_M_contig11332.2782.1 ID=prot_M-pyrifera_M_contig11332.2782.1|Name=mRNA_M-pyrifera_M_contig11332.2782.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=410bp
MKFDDVLKNLTGQAGSLEALLGVFFSFLHRNTDFYVTFDPATTTRPGMGF
PPGKAEQLLLRAFNSLPFKQYGGQQQQQQQPRSGTGKGRGAGRGAALAAV
PHSRSSAAVVPSSSSSSKPGEVVDGESRTATPQQQQQQHQQQGSGSQGSE
SSPNATCREGVGPSSSLRTAPSPQAVTSVAPAAFESNNTRVRYTDSGKQV
PIGNGGVTPKYYWTQTVSEATVYVDVPPGTRSKDVYCRIQPRRLKLRVRG
AGATASPTTMVTSTAEAAAAAPAAPNGSAGGAAPEDGEDVIIDGELPSAV
SREGSMWSLNDGKTVVISFEKATRTWWKSVVEGDPEIDTSKVDSTSKISE
YDEETQSTIRKIMFDERQKALGLPTSDQISSDSLLEKAKSLPGSPFLPGG
ALFSGGSNGG
back to top

mRNA from alignment at M-pyrifera_M_contig11332:6154..8845-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11332.2782.1 ID=mRNA_M-pyrifera_M_contig11332.2782.1|Name=mRNA_M-pyrifera_M_contig11332.2782.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2692bp|location=Sequence derived from alignment at M-pyrifera_M_contig11332:6154..8845- (Macrocystis pyrifera P11B4 male)
ATGAAGTTTGACGACGTGTTGAAGAACCTGACGGGACAAGCGGGTTCTCT TGAGGCCCTCCTCGGGGTGTTCTTCTCCTTCCTACACAGGAACACGGACT TCTACGTCACGTTTGACCCGGCGACAACCACGAGGCCGGGTATGGGCTTC CCGCCTGGCAAAGCGGAGCAGCTTCTCCTTCGCGCTTTCAACTCCCTCCC GTTCAAGCAATACGGTGGGCAGCAGCAGCAGCAGCAGCAGCCACGTTCAG GGACAGGGAAAGGTAGAGGGGCCGGGAGAGGAGCAGCACTGGCCGCCGTC CCGCACAGCAGATCTTCAGCTGCAGTGGTGCCGTCCACCAGCCGCTCTGT CGGGCAGGGAGGTAAACCCAAGGTGGCACCAGCGTCCCACGCGCCAGGGG TAGTGGGTATGAGCAGCAGCAGCAGCAGCAGCAAACCGGGAGAGGTGGTA GACGGCGAATCAAGAACTGCAACTCCGCAACAGCAGCAGCAACAGCATCA GCAACAGGGAAGCGGCAGCCAAGGGTCTGAATCGTCGCCGAATGCAACGT GCAGGGAAGGTGTTGGCCCTAGCTCCTCGTTGCGGACAGCCCCTTCCCCC CAGGCTGTCACCTCCGTCGCCCCCGCGGCCTTTGAATCGAACAACACCCG CGTGCGTTACACCGACAGCGGGAAGCAAGTGCCCATCGGAAACGGCGGCG TGACTCCCAAGTACTACTGGACGCAAACGGTGAGCGAAGCTACCGTCTAC GTCGACGTGCCGCCTGGCACCCGCTCGAAGGATGTGTATTGCCGCATCCA ACCTCGAAGGCTGAAGCTTAGGGTTAGAGGAGCCGGGGCGACGGCATCAC CAACAACTATGGTAACATCGACGGCAGAAGCGGCGGCGGCGGCGCCAGCA GCGCCAAATGGATCCGCGGGGGGGGCGGCGCCGGAAGACGGAGAAGATGT GATCATCGACGGGGAGCTGCCGAGCGCTGTGTCGCGGGAGGGCAGCATGT GGAGCCTCAACGACGGCAAGACGGTCGTGATTTCGTTCGAAAAGGCGACC AGGACGTGGTGGAAGAGCGTCGTGGAAGGCGACCCGGAGATAGACACCTC CAAGGTGAGCCACTGCTGTATTATATAGTGTAGGTATGACACGCACGATG AAGGTTTGTTGTATTTACCAACACTTGGGCGGATTGTCCTTCCACTTGTC TGGTGTGGAAGCTACGGCTTGTCCTCAACGCCTTTGTGGTGTACGGTATG GTAAGAGGTGATTCGAGGGAGGCGACTACAGCATTTTTCTGTTCTTGTAG TAGGGAATGCGTATTTTGCTTCATGCTCCCGACTGGTCGATGTGATCAGG CTTGGGGCATGTGCCGGTACCTTGCTGAGAATATCGTCTCAATTGCGCGT CCAGACGGAACGGCGCCATGCGAGCGTTAATTTGTTTCACACCTCGGACA CTTGAAATATATCATGATCATGACTATCCACAGTAGTTCCTCACCTGCCG TTGCGAGGTGTTGTACAGGTTTTGCACGTACTAGTACATACCCGACCCAG GAAACATGTACGCGTAGATAATGCAATTTCTCCTCTTGGTTGCCACTTGT ATTGCAATTGCTGGCAGACTTGAAATATGCACAGCAGTGCCAAAGCGCAC TGCAGCAACGATCCCCCCCTACCCTCCATCGGCCCTTGAGGTGGTCTGCG CGCTTTCGACACAACGCTTGTCTTGCCTCGGTGATGGCATCGCTTGCATT CGTTTATCCCACTTTGGGGTCTTCAGAGAAGAAACTTGATAAAAAAGGAC GGTTACAGAGACGGTCACTGCGTGATTGGGGGGTGATACAGAGGTTGGTG TCCGAGTTACAATGGTTGATGCAAGGAATGGCACGGCGCGGTCGCAACAC GAACGTACTGCTAGGCGCTCACTCTGCTCGTATATACGCGATCGATAACA CCAAAGTTACCAACCATTCTTTTGGTCGCTATCCCTCAAAAGGGGGTCCC GAAGAGGTCAAGATGAAGGCAGAAACTCCAAGCCACATGTGGCTTTGGGG ATGCTGCTCGCACTGATCGTTTTTACTGGCGTCTTTGGCGCTGATGAGGA AGAACGGTGTACACAATCTCACTAGGGGTTGCTCGCTTGACGCGAGGACC CGATCACCGCGTAATTTCTGATCATGATAGACCTACTTGCTTGGAGTTGC TCGCTGGAAGCGAGGACCCGATCACAGCGTAACTTTTGTCATAAGAGACC TACTTGCTTGGCGCACTGCTGAAGTAGCAAGGCAGCCGTATGCAGCGATG ACGGTCGAACGCCGAGGATAGCCCCTGAGGTGCCAAAGCAACAACCACGC CGCGCTTGCTTGAGATACGACAAGCCAGTCGTTTTCAATGATCACGCCGT TCCTAATATGCCACCCTATCGGCCATCACACTCTCGCCTGTCTTCCGCCG CTCGTTCCCCTGTGTCTCAACAACAATAATGGCAGGTGGATTCCACGTCT AAGATAAGCGAGTACGACGAGGAGACCCAAAGCACGATCCGCAAGATCAT GTTCGACGAGCGGCAGAAAGCTCTCGGCCTCCCCACGAGTGACCAAATTT CCTCCGACTCGCTGCTGGAGAAGGCGAAAAGCTTGCCGGGCAGCCCCTTC CTGCCGGGGGGCGCTCTGTTCAGCGGGGGTAGCAACGGGGGT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig11332:6154..8845-

>mRNA_M-pyrifera_M_contig11332.2782.1 ID=mRNA_M-pyrifera_M_contig11332.2782.1|Name=mRNA_M-pyrifera_M_contig11332.2782.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2460bp|location=Sequence derived from alignment at M-pyrifera_M_contig11332:6154..8845- (Macrocystis pyrifera P11B4 male)
ATGAAGTTTGACGACGTGTTGAAGAACCTGACGGGACAAGCGGGTTCTCT
TGAGGCCCTCCTCGGGGTGTTCTTCTCCTTCCTACACAGGAACACGGACT
TCTACGTCACGTTTGACCCGGCGACAACCACGAGGCCGGGTATGGGCTTC
CCGCCTGGCAAAGCGGAGCAGCTTCTCCTTCGCGCTTTCAACTCCCTCCC
GTTCAAGCAATACGGTGGGCAGCAGCAGCAGCAGCAGCAGCCACGTTCAG
GGACAGGGAAAGGTAGAGGGGCCGGGAGAGGAGCAGCACTGGCCGCCGTC
CCGCACAGCAGATCTTCAGCTGCAGTGGTGCCATGAAGTTTGACGACGTG
TTGAAGAACCTGACGGGACAAGCGGGTTCTCTTGAGGCCCTCCTCGGGGT
GTTCTTCTCCTTCCTACACAGGAACACGGACTTCTACGTCACGTTTGACC
CGGCGACAACCACGAGGCCGGGTATGGGCTTCCCGCCTGGCAAAGCGGAG
CAGCTTCTCCTTCGCGCTTTCAACTCCCTCCCGTTCAAGCAATACGGTGG
GCAGCAGCAGCAGCAGCAGCAGCCACGTTCAGGGACAGGGAAAGGTAGAG
GGGCCGGGAGAGGAGCAGCACTGGCCGCCGTCCCGCACAGCAGATCTTCA
GCTGCAGTGGTGCCCAGCAGCAGCAGCAGCAGCAAACCGGGAGAGGTGGT
AGACGGCGAATCAAGAACTGCAACTCCGCAACAGCAGCAGCAACAGCATC
AGCAACAGGGAAGCGGCAGCCAAGGGTCTGAATCGTCGCCGAATGCAACG
TGCAGGGAAGGTGTTGGCCCTAGCTCCTCGTTGCGGACAGCCCCTTCCCC
CCAGGCTGTCACCTCCGTCGCCCCCGCGGCCTTTGAATCGAACAACACCC
GCGTGCGTTACACCGACAGCGGGAAGCAAGTGCCCATCGGAAACGGCGGC
GTGACTCCCAAGTACTACTGGACGCAAACGGTGAGCGAAGCTACCGTCTA
CGTCGACGTGCCGCCTGGCACCCGCTCGAAGGATGTGTATTGCCGCATCC
AACCTCGAAGGCTGAAGCTTAGGGTTAGAGGAGCCGGGGCGACGGCATCA
CCAACAACTATGGTAACATCGACGGCAGAAGCGGCGGCGGCGGCGCCAGC
AGCGCCAAATGGATCCGCGGGGGGGGCGGCGCCGGAAGACGGAGAAGATG
TGATCATCGACGGGGAGCTGCCGAGCGCTGTGTCGCGGGAGGGCAGCATG
TGGAGCCTCAACGACGGCAAGACGGTCGTGATTTCGTTCGAAAAGGCGAC
CAGGACGTGGTGGAAGAGCGTCGTGGAAGGCGACCCGGAGATAGACACCT
CCAAGCAGCAGCAGCAGCAGCAGCAAACCGGGAGAGGTGGTAGACGGCGA
ATCAAGAACTGCAACTCCGCAACAGCAGCAGCAACAGCATCAGCAACAGG
GAAGCGGCAGCCAAGGGTCTGAATCGTCGCCGAATGCAACGTGCAGGGAA
GGTGTTGGCCCTAGCTCCTCGTTGCGGACAGCCCCTTCCCCCCAGGCTGT
CACCTCCGTCGCCCCCGCGGCCTTTGAATCGAACAACACCCGCGTGCGTT
ACACCGACAGCGGGAAGCAAGTGCCCATCGGAAACGGCGGCGTGACTCCC
AAGTACTACTGGACGCAAACGGTGAGCGAAGCTACCGTCTACGTCGACGT
GCCGCCTGGCACCCGCTCGAAGGATGTGTATTGCCGCATCCAACCTCGAA
GGCTGAAGCTTAGGGTTAGAGGAGCCGGGGCGACGGCATCACCAACAACT
ATGGTAACATCGACGGCAGAAGCGGCGGCGGCGGCGCCAGCAGCGCCAAA
TGGATCCGCGGGGGGGGCGGCGCCGGAAGACGGAGAAGATGTGATCATCG
ACGGGGAGCTGCCGAGCGCTGTGTCGCGGGAGGGCAGCATGTGGAGCCTC
AACGACGGCAAGACGGTCGTGATTTCGTTCGAAAAGGCGACCAGGACGTG
GTGGAAGAGCGTCGTGGAAGGCGACCCGGAGATAGACACCTCCAAGGTGG
ATTCCACGTCTAAGATAAGCGAGTACGACGAGGAGACCCAAAGCACGATC
CGCAAGATCATGTTCGACGAGCGGCAGAAAGCTCTCGGCCTCCCCACGAG
TGACCAAATTTCCTCCGACTCGCTGCTGGAGAAGGCGAAAAGCTTGCCGG
GCAGCCCCTTCCTGCCGGGGGGCGCTCTGTTCAGCGGGGGTAGCAACGGG
GGTGTGGATTCCACGTCTAAGATAAGCGAGTACGACGAGGAGACCCAAAG
CACGATCCGCAAGATCATGTTCGACGAGCGGCAGAAAGCTCTCGGCCTCC
CCACGAGTGACCAAATTTCCTCCGACTCGCTGCTGGAGAAGGCGAAAAGC
TTGCCGGGCAGCCCCTTCCTGCCGGGGGGCGCTCTGTTCAGCGGGGGTAG
CAACGGGGGT
back to top