mRNA_M-pyrifera_M_contig113233.2763.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113233.2763.1
Unique NamemRNA_M-pyrifera_M_contig113233.2763.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113233.2763.1 vs. uniprot
Match: UPI00199B78BA (GNAT family N-acetyltransferase n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=UPI00199B78BA)

HSP 1 Score: 103 bits (257), Expect = 2.620e-24
Identity = 47/90 (52.22%), Postives = 64/90 (71.11%), Query Frame = 1
Query:   34 SLTDDHWRVWNEIQDSNPALDSPYFRAEFTQAVSEVRDNVEVGLLQDGDEIVGCFPFHRRANDVGKPVGHPLSDFHGLVVGPDATWDAAD 303
            SL   +W+ W++IQ + PALDSPYFR EFTQAV++VR +VEV ++ +G E VG FPF R   ++GKPVG  LSD+HG++       DAA+
Sbjct:   12 SLAAVYWQRWSQIQAAEPALDSPYFRPEFTQAVAKVRRDVEVAVVLEGSEAVGFFPFQRGPLNIGKPVGGKLSDYHGVIARSTTPIDAAE 101          
BLAST of mRNA_M-pyrifera_M_contig113233.2763.1 vs. uniprot
Match: A0A7C1I062_9DELT (GNAT family N-acetyltransferase n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A7C1I062_9DELT)

HSP 1 Score: 100 bits (250), Expect = 2.620e-23
Identity = 47/87 (54.02%), Postives = 59/87 (67.82%), Query Frame = 1
Query:   37 LTDDHWRVWNEIQDSNPALDSPYFRAEFTQAVSEVRDNVEVGLLQDGDEIVGCFPFHRRANDVGKPVGHPLSDFHGLVVGPDATWDA 297
            LT D    W++IQ ++ AL SPYFR EFTQ V+ VRD+V VGL+Q G E+VG FPF R      +PVG  LSD+HG++  PDA W A
Sbjct:   11 LTPDLVARWSDIQRADQALASPYFRPEFTQTVAAVRDDVLVGLMQAGGEVVGFFPFQRGRGGSSRPVGLALSDYHGVIAAPDAQWTA 97          
BLAST of mRNA_M-pyrifera_M_contig113233.2763.1 vs. uniprot
Match: A0A2V6N2L9_9BACT (Acetyltransf_6 domain-containing protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V6N2L9_9BACT)

HSP 1 Score: 97.8 bits (242), Expect = 3.560e-22
Identity = 44/98 (44.90%), Postives = 63/98 (64.29%), Query Frame = 1
Query:    1 VMVTIHPHSARSLTDDHWRVWNEIQDSNPALDSPYFRAEFTQAVSEVRDNVEVGLLQDGDEIVGCFPFHRRANDVGKPVGHPLSDFHGLVVGPDATWD 294
            + +T+ P   R L  D    W E+Q SNP L SP+F  EFT  V+  R++VE+ L+Q+G E+VG FPF R +  +G+ VGHPLSD+HG+V   +  +D
Sbjct:    3 MQITLIP--GRELGRDLVDRWTELQRSNPLLISPFFAPEFTSVVAAARNDVEIALIQEGGEVVGFFPFQRESKTIGRAVGHPLSDYHGVVCASELVFD 98          
BLAST of mRNA_M-pyrifera_M_contig113233.2763.1 vs. uniprot
Match: UPI001F1013EC (GNAT family N-acetyltransferase n=1 Tax=Thioalkalivibrio sp. XN8 TaxID=2712863 RepID=UPI001F1013EC)

HSP 1 Score: 95.1 bits (235), Expect = 4.080e-21
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 1
Query:   61 WNEIQDSNPALDSPYFRAEFTQAVSEVRDNVEVGLLQDGDEIVGCFPFHRRANDVGKPVGHPLSDFHGLVVGPDATWDAAD 303
            W  +Q S+P   SPYFR E+ QAV+  R+++ + LL+DG+++VG FPFHR    V +P G  LSD HG++V P A W AAD
Sbjct:   26 WGSLQRSDPQFASPYFRPEYAQAVAATRNDLRICLLEDGNQVVGFFPFHRSRGGVARPAGLGLSDHHGVIVEPAAEWHAAD 106          
BLAST of mRNA_M-pyrifera_M_contig113233.2763.1 vs. uniprot
Match: A0A2E0SLL6_9PLAN (Acetyltransf_6 domain-containing protein n=1 Tax=Planctomyces sp. TaxID=37635 RepID=A0A2E0SLL6_9PLAN)

HSP 1 Score: 92.0 bits (227), Expect = 7.670e-20
Identity = 40/79 (50.63%), Postives = 56/79 (70.89%), Query Frame = 1
Query:   37 LTDDHWRVWNEIQDSNPALDSPYFRAEFTQAVSEVRDNVEVGLLQDGDEIVGCFPFHRRANDVGKPVGHPLSDFHGLVV 273
            LT    R W EIQ SNP LDSP+FR E+T+ VS VR +++V +++  + I G FPFHR   +VG+PVG+P++DF G+V 
Sbjct:   51 LTPRELRRWEEIQQSNPDLDSPFFRPEYTKLVSFVRKDMDVVIIEQHNRIFGFFPFHRDPYNVGRPVGYPMNDFQGIVA 129          
BLAST of mRNA_M-pyrifera_M_contig113233.2763.1 vs. uniprot
Match: A0A3E0PR02_9BACT (GNAT family N-acetyltransferase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0PR02_9BACT)

HSP 1 Score: 91.3 bits (225), Expect = 1.260e-19
Identity = 40/79 (50.63%), Postives = 54/79 (68.35%), Query Frame = 1
Query:   37 LTDDHWRVWNEIQDSNPALDSPYFRAEFTQAVSEVRDNVEVGLLQDGDEIVGCFPFHRRANDVGKPVGHPLSDFHGLVV 273
            LT D    W+++Q  NP+L SPYFR EFTQAV++VR +VEV +L+    +VG  PF R   +VG+PV   LSDFHG++ 
Sbjct:   35 LTPDEIAAWSDMQRGNPSLGSPYFRPEFTQAVADVRGDVEVAVLEQDGAVVGFLPFQRGRRNVGRPVAGLLSDFHGVIA 113          
BLAST of mRNA_M-pyrifera_M_contig113233.2763.1 vs. uniprot
Match: D2R106_PIRSD (Cellulose biosynthetic (CelD)-like protein n=2 Tax=Pirellula staleyi TaxID=125 RepID=D2R106_PIRSD)

HSP 1 Score: 89.4 bits (220), Expect = 5.880e-19
Identity = 42/86 (48.84%), Postives = 53/86 (61.63%), Query Frame = 1
Query:   37 LTDDHWRVWNEIQDSNPALDSPYFRAEFTQAVSEVRDNVEVGLLQDGDEIVGCFPFHRRANDVGKPVGHPLSDFHGLVVGPDATWD 294
            LT   W+ W   Q +   L SPYF  EFTQAVS VRD+VE+  L +  E+VG  PF R A ++GKPVG  LSD+HG++  P    D
Sbjct:   23 LTTFAWQAWERWQSTQAELQSPYFTPEFTQAVSLVRDDVEIAQLFEAGELVGVLPFQRGAFNLGKPVGGKLSDYHGVIGTPGLALD 108          
BLAST of mRNA_M-pyrifera_M_contig113233.2763.1 vs. uniprot
Match: UPI0012FFE6FC (GNAT family N-acetyltransferase n=1 Tax=Microvirga ossetica TaxID=1882682 RepID=UPI0012FFE6FC)

HSP 1 Score: 89.0 bits (219), Expect = 8.350e-19
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 1
Query:   28 ARSLTDDHWRVWNEIQDSNPALDSPYFRAEFTQAVSEVRDNVEVGLLQDGDEIVGCFPFHRRANDVGKPVGHPLSDFHGLVVGPDATWD 294
            A  L++D    W EI+  NPAL SP+FR EFT+AV++VRD+V V ++ +G   +  FPF R +   GKPVG P+SD+HGL+   D + D
Sbjct:    8 ANELSEDLVARWTEIRQKNPALFSPFFRPEFTRAVAKVRDDVFVAIIDNG---IAFFPFQRSSIGHGKPVGGPVSDYHGLIAASDFSCD 93          
BLAST of mRNA_M-pyrifera_M_contig113233.2763.1 vs. uniprot
Match: J2GB96_9CAUL (Protein involved in cellulose biosynthesis (CelD) n=2 Tax=unclassified Caulobacter TaxID=2648921 RepID=J2GB96_9CAUL)

HSP 1 Score: 89.0 bits (219), Expect = 8.630e-19
Identity = 39/98 (39.80%), Postives = 59/98 (60.20%), Query Frame = 1
Query:   10 TIHPHSARSLTDDHWRVWNEIQDSNPALDSPYFRAEFTQAVSEVRDNVEVGLLQDGDEIVGCFPFHRRANDVGKPVGHPLSDFHGLVVGPDATWDAAD 303
            T+HP   R L+    R+W ++  + PA  SP    +F +AV  VRD+  V +++   E++G  P HRR   + +P+G PLSD+HGLV GPDA  + A+
Sbjct:    6 TLHP---RELSAAERRIWRDMATAEPAFSSPLMGPDFARAVGAVRDDTRVAVIRRHGEVLGFLPHHRRPGHLARPIGSPLSDYHGLVSGPDADLNGAE 100          
BLAST of mRNA_M-pyrifera_M_contig113233.2763.1 vs. uniprot
Match: A0A517YAS8_9BACT (Acetyltransf_6 domain-containing protein n=1 Tax=Anatilimnocola aggregata TaxID=2528021 RepID=A0A517YAS8_9BACT)

HSP 1 Score: 86.3 bits (212), Expect = 7.730e-18
Identity = 44/88 (50.00%), Postives = 55/88 (62.50%), Query Frame = 1
Query:   31 RSLTDDHWRVWNEIQDSNPALDSPYFRAEFTQAVSEVRDNVEVGLLQDGDEIVGCFPFHRRANDVGKPVGHPLSDFHGLVVGPDATWD 294
            R L+ D    W EIQ SNPAL SPYFR EFTQAV+ VR +VEV +L++   I G FPF R      +PV   L+DF GL++ P  + D
Sbjct:   18 RELSGDLCARWAEIQCSNPALSSPYFRPEFTQAVAAVRTDVEVAVLENDAGIQGFFPFQRGWWGNSQPVAGRLTDFQGLIISPGVSCD 105          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113233.2763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00199B78BA2.620e-2452.22GNAT family N-acetyltransferase n=1 Tax=Pirellulac... [more]
A0A7C1I062_9DELT2.620e-2354.02GNAT family N-acetyltransferase n=1 Tax=Desulfobac... [more]
A0A2V6N2L9_9BACT3.560e-2244.90Acetyltransf_6 domain-containing protein n=1 Tax=V... [more]
UPI001F1013EC4.080e-2149.38GNAT family N-acetyltransferase n=1 Tax=Thioalkali... [more]
A0A2E0SLL6_9PLAN7.670e-2050.63Acetyltransf_6 domain-containing protein n=1 Tax=P... [more]
A0A3E0PR02_9BACT1.260e-1950.63GNAT family N-acetyltransferase n=1 Tax=Planctomyc... [more]
D2R106_PIRSD5.880e-1948.84Cellulose biosynthetic (CelD)-like protein n=2 Tax... [more]
UPI0012FFE6FC8.350e-1947.19GNAT family N-acetyltransferase n=1 Tax=Microvirga... [more]
J2GB96_9CAUL8.630e-1939.80Protein involved in cellulose biosynthesis (CelD) ... [more]
A0A517YAS8_9BACT7.730e-1850.00Acetyltransf_6 domain-containing protein n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113233contigM-pyrifera_M_contig113233:276..578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score101.3
Seed ortholog evalue2.7e-19
Seed eggNOG ortholog589865.DaAHT2_1765
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Acetyltransferase (GNAT) domain
EggNOG OGs1RFMQ@1224,COG5653@1,COG5653@2
COG Functional cat.M
Best tax levelProteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size303
Cds size300
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.376212-UTR-M-pyrifera_M_contig113233:275..2781622815647.376212-UTR-M-pyrifera_M_contig113233:275..278Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig113233 276..278 +
1692277503.7547216-UTR-M-pyrifera_M_contig113233:275..2781692277503.7547216-UTR-M-pyrifera_M_contig113233:275..278Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig113233 276..278 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.3899853-CDS-M-pyrifera_M_contig113233:278..5781622815647.3899853-CDS-M-pyrifera_M_contig113233:278..578Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113233 279..578 +
1692277503.7652104-CDS-M-pyrifera_M_contig113233:278..5781692277503.7652104-CDS-M-pyrifera_M_contig113233:278..578Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113233 279..578 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113233.2763.1prot_M-pyrifera_M_contig113233.2763.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113233 279..578 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113233.2763.1

>prot_M-pyrifera_M_contig113233.2763.1 ID=prot_M-pyrifera_M_contig113233.2763.1|Name=mRNA_M-pyrifera_M_contig113233.2763.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
MVTIHPHSARSLTDDHWRVWNEIQDSNPALDSPYFRAEFTQAVSEVRDNV
EVGLLQDGDEIVGCFPFHRRANDVGKPVGHPLSDFHGLVVGPDATWDAAD
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mRNA from alignment at M-pyrifera_M_contig113233:276..578+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113233.2763.1 ID=mRNA_M-pyrifera_M_contig113233.2763.1|Name=mRNA_M-pyrifera_M_contig113233.2763.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=303bp|location=Sequence derived from alignment at M-pyrifera_M_contig113233:276..578+ (Macrocystis pyrifera P11B4 male)
GTAATGGTGACAATCCATCCTCATTCAGCACGGAGTCTCACAGACGATCA TTGGAGAGTCTGGAATGAGATCCAGGATAGCAATCCAGCACTCGACAGTC CGTACTTTCGTGCCGAGTTTACGCAAGCAGTCTCCGAAGTCCGTGACAAC GTTGAAGTCGGCCTCTTGCAGGATGGGGATGAGATCGTAGGCTGCTTCCC ATTTCATCGTCGCGCGAATGACGTCGGCAAACCGGTGGGCCATCCGCTTT CAGATTTCCACGGTCTGGTTGTTGGACCTGATGCAACATGGGACGCCGCC GAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113233:276..578+

>mRNA_M-pyrifera_M_contig113233.2763.1 ID=mRNA_M-pyrifera_M_contig113233.2763.1|Name=mRNA_M-pyrifera_M_contig113233.2763.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig113233:276..578+ (Macrocystis pyrifera P11B4 male)
ATGGTGACAATCCATCCTCATTCAGCACGGAGTCTCACAGACGATCATTG
GAGAGTCTGGAATGAGATCCAGGATAGCAATCCAGCACTCGACAGTCCGT
ACTTTCGTGCCGAGTTTACGCAAGCAGTCTCCGAAGTCCGTGACAACGTT
GAAGTCGGCCTCTTGCAGGATGGGGATGAGATCGTAGGCTGCTTCCCATT
TCATCGTCGCGCGAATGACGTCGGCAAACCGGTGGGCCATCCGCTTTCAG
ATTTCCACGGTCTGGTTGTTGGACCTGATGCAACATGGGACGCCGCCGAT
ATGGTGACAATCCATCCTCATTCAGCACGGAGTCTCACAGACGATCATTG
GAGAGTCTGGAATGAGATCCAGGATAGCAATCCAGCACTCGACAGTCCGT
ACTTTCGTGCCGAGTTTACGCAAGCAGTCTCCGAAGTCCGTGACAACGTT
GAAGTCGGCCTCTTGCAGGATGGGGATGAGATCGTAGGCTGCTTCCCATT
TCATCGTCGCGCGAATGACGTCGGCAAACCGGTGGGCCATCCGCTTTCAG
ATTTCCACGGTCTGGTTGTTGGACCTGATGCAACATGGGACGCCGCCGAT
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