mRNA_M-pyrifera_M_contig113198.2750.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113198.2750.1
Unique NamemRNA_M-pyrifera_M_contig113198.2750.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113198.2750.1 vs. uniprot
Match: UPI00069A9FBA (response regulator n=1 Tax=Desulfonatronum thioautotrophicum TaxID=617001 RepID=UPI00069A9FBA)

HSP 1 Score: 108 bits (271), Expect = 4.990e-26
Identity = 63/130 (48.46%), Postives = 81/130 (62.31%), Query Frame = 1
Query:    1 IVIIEDDEVDTEAARRLLARADIGALEVDSYTRLGDAREQLARGEVDVILLDLGLPDVYGLEAVETAHRFAPATPIIVLSGNDDEELAVASLRCGAQDYILKASLDLDTLRRAVRLALARADSERSLRRS 390
            ++++EDD  D    R  L    IG+ E    T LG+ARE +   + DV+LLDL LPD  GLE V      A   P++VL+G DDEELA+  L  GAQDY++K   D D L RA+R ALARA +ER+LRRS
Sbjct:   11 VLLVEDDPGDAGLIRNALKDKRIGSFEETWVTSLGEAREIMDAVQFDVVLLDLSLPDSQGLETVRGGLEAARDMPVVVLTGRDDEELALRILEMGAQDYLVKGRHDADALLRALRHALARARTERALRRS 140          
BLAST of mRNA_M-pyrifera_M_contig113198.2750.1 vs. uniprot
Match: A0A7C3T8C5_9BACT (PAS domain S-box protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7C3T8C5_9BACT)

HSP 1 Score: 111 bits (278), Expect = 8.390e-26
Identity = 51/128 (39.84%), Postives = 88/128 (68.75%), Query Frame = 1
Query:    1 IVIIEDDEVDTEAARRLLARADIGALEVDSYTRLGDAREQLARGEVDVILLDLGLPDVYGLEAVETAHRFAPATPIIVLSGNDDEELAVASLRCGAQDYILKASLDLDTLRRAVRLALARADSERSLR 384
            I+IIEDD +D ++ +RL+AR+ +   +V+S   + DAR+ LA+G+ D++L DLGLPD +G++ ++     AP  P+++LSG DDE  A+ +++ G QDY++K  +D   L R+++ A+ R  +ER +R
Sbjct:   14 ILIIEDDLIDRKSLQRLIARSSLADAQVESVGSIKDARDVLAKGQYDIVLSDLGLPDSHGMDTIKALRTLAPELPLVILSGLDDEATAILAVQQGVQDYLIKGQVDSQLLVRSIKYAIERKKAERQMR 141          
BLAST of mRNA_M-pyrifera_M_contig113198.2750.1 vs. uniprot
Match: A0A2V8S939_9BACT (GGDEF domain-containing response regulator n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8S939_9BACT)

HSP 1 Score: 107 bits (268), Expect = 1.490e-24
Identity = 56/127 (44.09%), Postives = 79/127 (62.20%), Query Frame = 1
Query:    1 IVIIEDDEVDTEAARRLLARADIGALEVDSYTRLGDAREQLARGEVDVILLDLGLPDVYGLEAVETAHRFAPATPIIVLSGNDDEELAVASLRCGAQDYILKASLDLDTLRRAVRLALARADSERSL 381
            ++++ED+  D    R LL  A     E+   TRL +A   L +   D +LLDLGLPD YGLEAV+     APA PI+VLSG+ DE LAV +++CGAQDY++K     + L R++R A+ R   E+S+
Sbjct:    4 LLLVEDNPGDARMVRELLQEAGSAPFEITHVTRLSEAVRCLGQDGFDAVLLDLGLPDAYGLEAVDPIKNAAPAIPIVVLSGHQDERLAVQAVQCGAQDYLIKGRESGELLARSIRYAIERKRMEQSM 130          
BLAST of mRNA_M-pyrifera_M_contig113198.2750.1 vs. uniprot
Match: A0A351CF86_9DELT (Uncharacterized protein n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A351CF86_9DELT)

HSP 1 Score: 103 bits (257), Expect = 3.490e-24
Identity = 58/141 (41.13%), Postives = 86/141 (60.99%), Query Frame = 1
Query:    1 IVIIEDDEVDTEAARRLLARADIGALEVDSYTRLGDAREQLARGEVDVILLDLGLPDVYGLEAVETAHRFAPATPIIVLSGNDDEELAVASLRCGAQDYILKASLDLDTLRRAVRLALARADSERSLRRSVLKLLVRSDDL 423
            I++IED+  D    R LL+ +   ++++    RL D R  L   E DV+LLDL LPD  G+E +   +  AP   ++VL+G DDEE A+ SLR GAQDY++K  +D D L R +R +L R  +E++L +S  KL  ++ DL
Sbjct:    7 ILLIEDNPGDIRLIRELLSESQRSSVDITVSERLSDGRSALVNQEFDVVLLDLTLPDSQGIETLRKVYPDAPHAAVVVLTGLDDEETALTSLREGAQDYLVKDRMDPDALWRTIRYSLERKQAEQALVQSERKLKAKTADL 147          
BLAST of mRNA_M-pyrifera_M_contig113198.2750.1 vs. uniprot
Match: A0A2V9DQ63_9BACT (Hybrid sensor histidine kinase/response regulator (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9DQ63_9BACT)

HSP 1 Score: 100 bits (250), Expect = 8.510e-24
Identity = 51/120 (42.50%), Postives = 75/120 (62.50%), Query Frame = 1
Query:    1 IVIIEDDEVDTEAARRLLARADIGALEVDSYTRLGDAREQLARGEVDVILLDLGLPDVYGLEAVETAHRFAPATPIIVLSGNDDEELAVASLRCGAQDYILKASLDLDTLRRAVRLALAR 360
            ++++ED+  D    R + +    G+ E+    R+ +A   LA+G VD+ LLDLGLPD  GLE V  AH  AP  P+IVL+G DDE LA  +++ GAQDY++K  ++   L RA+R A+ R
Sbjct:    8 VLLVEDNAGDARLLREMFSTERAGSFELTHLLRMSEAVAHLAKGGVDIALLDLGLPDAQGLETVRRAHAVAPDVPVIVLTGLDDEALAAEAMKEGAQDYLIKGQIENRALPRALRHAIER 127          
BLAST of mRNA_M-pyrifera_M_contig113198.2750.1 vs. uniprot
Match: A0A533BK49_9BACT (Uncharacterized protein n=1 Tax=Nitrospira sp. TaxID=70125 RepID=A0A533BK49_9BACT)

HSP 1 Score: 105 bits (262), Expect = 8.640e-24
Identity = 60/135 (44.44%), Postives = 88/135 (65.19%), Query Frame = 1
Query:    1 IVIIEDDEVDTEAARRLLA-RADIGALEVDSYTRLGDAREQLARGEVDVILLDLGLPDVYGLEAVETAHRFAPATPIIVLSGNDDEELAVASLRCGAQDYILKASLDLDTLRRAVRLALARADSERSLRRSVLKL 402
            +++IED+E D    R +LA + D+G +E++   RL     +L  G++D++LLDL LPD +GLE  +T  R AP  PI+VL+G DDE +A  ++R GAQDY++K  LD   L RA R A+ R  +ER+LR S  +L
Sbjct:    3 VLLIEDNEDDAILIREMLAEKKDLG-IELEWVDRLSRGLTELGSGKIDLVLLDLSLPDSHGLETFDTVQRCAPDVPIVVLTGLDDEAMANQAVRRGAQDYLVKGRLDSYLLTRAARYAVERKQAERALRESEAQL 136          
BLAST of mRNA_M-pyrifera_M_contig113198.2750.1 vs. uniprot
Match: D6Z2H1_DESAT (Response regulator receiver modulated diguanylate cyclase/phosphodiesterase n=1 Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) TaxID=589865 RepID=D6Z2H1_DESAT)

HSP 1 Score: 105 bits (262), Expect = 1.050e-23
Identity = 60/134 (44.78%), Postives = 84/134 (62.69%), Query Frame = 1
Query:    1 IVIIEDDEVDTEAARRLLARADIGALEVDSYTRLGDAREQLARGEVDVILLDLGLPDVYGLEAVETAHRFAPATPIIVLSGNDDEELAVASLRCGAQDYILKASLDLDTLRRAVRLALARADSERSLRRSVLKL 402
            ++++ED+  D    +R L  A  G   V++   L + R+ +A  + DV+LLDL LPD  GLE VE+  R AP TPI+VL+G+DDEELA A+L  GAQDY+ K +L   +L RA+R A+ RA  E  L  S  +L
Sbjct:   14 VLVVEDEPGDALLVQRTLLGAGSGRYAVETAASLAETRQIIAGRQPDVLLLDLALPDSTGLETVESVRRQAPQTPIVVLTGHDDEELAQAALEAGAQDYLTKNTLGSYSLSRAIRYAVTRARLENRLLESNRRL 147          
BLAST of mRNA_M-pyrifera_M_contig113198.2750.1 vs. uniprot
Match: UPI00069C1F65 (PAS domain-containing protein n=1 Tax=Desulfonatronum thioautotrophicum TaxID=617001 RepID=UPI00069C1F65)

HSP 1 Score: 103 bits (256), Expect = 7.070e-23
Identity = 61/130 (46.92%), Postives = 79/130 (60.77%), Query Frame = 1
Query:    1 IVIIEDDEVDTEAARRLLARADIGALEVDSYTRLGDAREQLARGEVDVILLDLGLPDVYGLEAVETAHRFAPATPIIVLSGNDDEELAVASLRCGAQDYILKASLDLDTLRRAVRLALARADSERSLRRS 390
            ++++EDD  D    R  L     G  E    T LG+ARE+L+    D +LLDL LPD  GLE V      A   P++VL+G +DEELA+  L  GAQDY++K   D D L RA+R ALARA +ER+LRRS
Sbjct:   11 LLLVEDDPGDAGLIRHALRDDRFGRFEATWVTTLGEARERLSARHFDAVLLDLTLPDSQGLETVLGGLEAARDVPVVVLTGWNDEELALRILEMGAQDYLVKGRHDTDALLRALRHALARARTERALRRS 140          
BLAST of mRNA_M-pyrifera_M_contig113198.2750.1 vs. uniprot
Match: C6HW18_9BACT (Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Leptospirillum ferrodiazotrophum TaxID=412449 RepID=C6HW18_9BACT)

HSP 1 Score: 103 bits (256), Expect = 7.440e-23
Identity = 56/124 (45.16%), Postives = 79/124 (63.71%), Query Frame = 1
Query:    1 IVIIEDDEVDTEAARRLLARADIGALEVDSYTRLGDAREQLARGEVDVILLDLGLPDVYGLEAVETAHRFAPATPIIVLSGNDDEELAVASLRCGAQDYILKASLDLDTLRRAVRLALARADSE 372
            I+ +ED+  D    R +L  AD   +E+   +R+G+ R +LA+G +DVILLDL LPD  GL AVE  H   P  P++VLS   DEELAVASL+ GAQD+++K  ++   L R++  A+ R D E
Sbjct:    8 ILFVEDNPGDIRLVREMLIAADEERIELSFVSRVGEVRTRLAQGGIDVILLDLNLPDANGLSAVEHIHADFPEIPLVVLSSVIDEELAVASLQAGAQDFLVKGMINGPLLTRSIFYAIKRKDLE 131          
BLAST of mRNA_M-pyrifera_M_contig113198.2750.1 vs. uniprot
Match: A0A517Z600_9PLAN (Phosphoserine phosphatase RsbU n=1 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517Z600_9PLAN)

HSP 1 Score: 101 bits (251), Expect = 1.190e-22
Identity = 57/121 (47.11%), Postives = 75/121 (61.98%), Query Frame = 1
Query:    1 IVIIEDDEVDTEAARRLLARADIGALEVDSYTRLGDAREQLARGEVDVILLDLGLPDVYGLEAVETAHRFAPATPIIVLSGNDDEELAVASLRCGAQDYILKASLDLDTLRRAVRLALARA 363
            I+++ED++ D E  RR L R      E+     L  AR  +A G  D+I+LDL LPD  GLE     H  A  TPI+VLSG DDEE+A  ++  GAQDY++K+SLD + L RA+R AL RA
Sbjct:    9 ILLVEDEQTDAELIRRTLQRRFSIPFELIHAPDLATARTLVAAGAPDLIVLDLSLPDSSGLETFRNLHAAAADTPIVVLSGYDDEEIAADAVGLGAQDYLVKSSLDANVLTRALRFALERA 129          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113198.2750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00069A9FBA4.990e-2648.46response regulator n=1 Tax=Desulfonatronum thioaut... [more]
A0A7C3T8C5_9BACT8.390e-2639.84PAS domain S-box protein n=1 Tax=Phycisphaerales b... [more]
A0A2V8S939_9BACT1.490e-2444.09GGDEF domain-containing response regulator n=1 Tax... [more]
A0A351CF86_9DELT3.490e-2441.13Uncharacterized protein n=1 Tax=Desulfobacteraceae... [more]
A0A2V9DQ63_9BACT8.510e-2442.50Hybrid sensor histidine kinase/response regulator ... [more]
A0A533BK49_9BACT8.640e-2444.44Uncharacterized protein n=1 Tax=Nitrospira sp. Tax... [more]
D6Z2H1_DESAT1.050e-2344.78Response regulator receiver modulated diguanylate ... [more]
UPI00069C1F657.070e-2346.92PAS domain-containing protein n=1 Tax=Desulfonatro... [more]
C6HW18_9BACT7.440e-2345.16Diguanylate cyclase/phosphodiesterase with PAS/PAC... [more]
A0A517Z600_9PLAN1.190e-2247.11Phosphoserine phosphatase RsbU n=1 Tax=Maioricimon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113198contigM-pyrifera_M_contig113198:37..459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score105.5
Seed ortholog evalue2e-20
Seed eggNOG ortholog589865.DaAHT2_1048
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM EAL domain
EggNOG OGs1MU2C@1224,2MIPM@213118,2WIK8@28221,42M0W@68525,COG5001@1,COG5001@2
Ec32 ortholog descriptionResponse receiver
Ec32 orthologEc-08_005640.1
COG Functional cat.T
Best tax levelDesulfobacterales
Best eggNOG OGNA|NA|NA
Exons1
Model size423
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815646.761744-CDS-M-pyrifera_M_contig113198:36..4591622815646.761744-CDS-M-pyrifera_M_contig113198:36..459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113198 37..459 -
1692277503.5420184-CDS-M-pyrifera_M_contig113198:36..4591692277503.5420184-CDS-M-pyrifera_M_contig113198:36..459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113198 37..459 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113198.2750.1prot_M-pyrifera_M_contig113198.2750.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113198 37..459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113198.2750.1

>prot_M-pyrifera_M_contig113198.2750.1 ID=prot_M-pyrifera_M_contig113198.2750.1|Name=mRNA_M-pyrifera_M_contig113198.2750.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
IVIIEDDEVDTEAARRLLARADIGALEVDSYTRLGDAREQLARGEVDVIL
LDLGLPDVYGLEAVETAHRFAPATPIIVLSGNDDEELAVASLRCGAQDYI
LKASLDLDTLRRAVRLALARADSERSLRRSVLKLLVRSDDL
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mRNA from alignment at M-pyrifera_M_contig113198:37..459-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113198.2750.1 ID=mRNA_M-pyrifera_M_contig113198.2750.1|Name=mRNA_M-pyrifera_M_contig113198.2750.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig113198:37..459- (Macrocystis pyrifera P11B4 male)
ATCGTCATCATCGAAGACGACGAGGTCGACACCGAAGCGGCTCGCCGCCT CCTGGCCCGTGCGGACATCGGCGCCCTCGAGGTCGACAGCTACACGCGGC TCGGCGATGCTCGAGAGCAATTGGCACGGGGCGAGGTGGATGTCATCCTT CTCGATCTCGGCCTGCCCGACGTCTACGGCCTCGAAGCCGTGGAGACCGC GCACCGCTTCGCTCCGGCGACCCCGATCATCGTCCTGTCGGGCAACGACG ACGAGGAACTGGCTGTCGCCAGCCTGCGCTGCGGGGCACAGGATTACATT CTGAAGGCCTCGCTCGACCTGGACACGCTCCGCCGAGCGGTCAGGCTGGC GCTCGCTCGAGCAGATTCCGAGCGCTCGCTCCGACGCTCGGTGCTGAAAC TTCTCGTTCGCTCCGATGATCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113198:37..459-

>mRNA_M-pyrifera_M_contig113198.2750.1 ID=mRNA_M-pyrifera_M_contig113198.2750.1|Name=mRNA_M-pyrifera_M_contig113198.2750.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig113198:37..459- (Macrocystis pyrifera P11B4 male)
ATCGTCATCATCGAAGACGACGAGGTCGACACCGAAGCGGCTCGCCGCCT
CCTGGCCCGTGCGGACATCGGCGCCCTCGAGGTCGACAGCTACACGCGGC
TCGGCGATGCTCGAGAGCAATTGGCACGGGGCGAGGTGGATGTCATCCTT
CTCGATCTCGGCCTGCCCGACGTCTACGGCCTCGAAGCCGTGGAGACCGC
GCACCGCTTCGCTCCGGCGACCCCGATCATCGTCCTGTCGGGCAACGACG
ACGAGGAACTGGCTGTCGCCAGCCTGCGCTGCGGGGCACAGGATTACATT
CTGAAGGCCTCGCTCGACCTGGACACGCTCCGCCGAGCGGTCAGGCTGGC
GCTCGCTCGAGCAGATTCCGAGCGCTCGCTCCGACGCTCGGTGCTGAAAC
TTCTCGTTCGCTCCGATGATCTCATCGTCATCATCGAAGACGACGAGGTC
GACACCGAAGCGGCTCGCCGCCTCCTGGCCCGTGCGGACATCGGCGCCCT
CGAGGTCGACAGCTACACGCGGCTCGGCGATGCTCGAGAGCAATTGGCAC
GGGGCGAGGTGGATGTCATCCTTCTCGATCTCGGCCTGCCCGACGTCTAC
GGCCTCGAAGCCGTGGAGACCGCGCACCGCTTCGCTCCGGCGACCCCGAT
CATCGTCCTGTCGGGCAACGACGACGAGGAACTGGCTGTCGCCAGCCTGC
GCTGCGGGGCACAGGATTACATTCTGAAGGCCTCGCTCGACCTGGACACG
CTCCGCCGAGCGGTCAGGCTGGCGCTCGCTCGAGCAGATTCCGAGCGCTC
GCTCCGACGCTCGGTGCTGAAACTTCTCGTTCGCTCCGATGATCTC
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