mRNA_M-pyrifera_M_contig113031.2704.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113031.2704.1
Unique NamemRNA_M-pyrifera_M_contig113031.2704.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113031.2704.1 vs. uniprot
Match: A0A2D6G4Q3_9PROT (DUF4440 domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D6G4Q3_9PROT)

HSP 1 Score: 66.6 bits (161), Expect = 6.490e-13
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    7 MEINIPAVHAEITEAFWRYTHAVIENDIDTVTTLFWHSSHTL 132
            MEINIP V AE+TEAFW+Y  A++ NDIDTVT LFW S HTL
Sbjct:    1 MEINIPEVQAEVTEAFWQYDRALLANDIDTVTELFWDSPHTL 42
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BLAST of mRNA_M-pyrifera_M_contig113031.2704.1 vs. uniprot
Match: A0A0Q8WK67_9BURK (Uncharacterized protein n=2 Tax=Achromobacter TaxID=222 RepID=A0A0Q8WK67_9BURK)

HSP 1 Score: 54.3 bits (129), Expect = 4.090e-8
Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    7 MEINIPAVHAEITEAFWRYTHAVIENDIDTVTTLFWHSSHTL 132
            M+IN+P V AE+TEAF RY  A++ ND+  + TLFW+S HTL
Sbjct:    1 MDINLPEVVAEVTEAFERYEAALVANDVSVLDTLFWNSPHTL 42
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BLAST of mRNA_M-pyrifera_M_contig113031.2704.1 vs. uniprot
Match: UPI0019EAD497 (Oxalurate catabolism protein HpxZ n=1 Tax=Acetobacteraceae bacterium H6797 TaxID=2571211 RepID=UPI0019EAD497)

HSP 1 Score: 54.3 bits (129), Expect = 4.340e-8
Identity = 23/42 (54.76%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    7 MEINIPAVHAEITEAFWRYTHAVIENDIDTVTTLFWHSSHTL 132
            MEINIP VHAE++EAF  Y  A+  ND++T+  LFW+S H +
Sbjct:    1 MEINIPEVHAEVSEAFAHYEKALTTNDVETLDALFWNSEHVI 42
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BLAST of mRNA_M-pyrifera_M_contig113031.2704.1 vs. uniprot
Match: A0A848NC95_9BURK (Oxalurate catabolism protein HpxZ n=32 Tax=Alcaligenaceae TaxID=506 RepID=A0A848NC95_9BURK)

HSP 1 Score: 50.8 bits (120), Expect = 9.320e-7
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    7 MEINIPAVHAEITEAFWRYTHAVIENDIDTVTTLFWHSSHTL 132
            M+IN+PAV AE+T AF RY  A++ N +D +  LFW S HTL
Sbjct:    1 MDINLPAVVAEVTMAFARYEAALVNNQVDVLDELFWDSPHTL 42
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BLAST of mRNA_M-pyrifera_M_contig113031.2704.1 vs. uniprot
Match: A0A1Y2QYG7_9BURK (DUF4440 domain-containing protein n=1 Tax=Hydrogenophaga sp. IBVHS1 TaxID=1985169 RepID=A0A1Y2QYG7_9BURK)

HSP 1 Score: 50.4 bits (119), Expect = 1.290e-6
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    7 MEINIPAVHAEITEAFWRYTHAVIENDIDTVTTLFWHSSHTL 132
            ME+NIP V AE+TEAF RY  A+  ND+  +  LFW S HTL
Sbjct:    1 MEVNIPDVLAEVTEAFERYEKALTTNDVAVLDELFWDSPHTL 42
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BLAST of mRNA_M-pyrifera_M_contig113031.2704.1 vs. uniprot
Match: UPI0019B109AE (Oxalurate catabolism protein HpxZ n=1 Tax=Rhizobacter sp. TaxID=1909292 RepID=UPI0019B109AE)

HSP 1 Score: 50.4 bits (119), Expect = 1.290e-6
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    7 MEINIPAVHAEITEAFWRYTHAVIENDIDTVTTLFWHSSHTL 132
            MEINIPAV AE+T AF RY  A++ N +  +  LFW S HTL
Sbjct:    1 MEINIPAVIAEVTAAFARYEDALVNNKVAVLDELFWRSPHTL 42
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BLAST of mRNA_M-pyrifera_M_contig113031.2704.1 vs. uniprot
Match: A0A1Q9Y5E2_9PSED (DUF4440 domain-containing protein n=2 Tax=unclassified Pseudomonas TaxID=196821 RepID=A0A1Q9Y5E2_9PSED)

HSP 1 Score: 50.1 bits (118), Expect = 1.920e-6
Identity = 21/41 (51.22%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:   10 EINIPAVHAEITEAFWRYTHAVIENDIDTVTTLFWHSSHTL 132
            +I++PAVHAE+T AF RY  A++ NDI  +  LFWH   T+
Sbjct:    5 QIDLPAVHAEVTAAFQRYERALVSNDIAVLDELFWHDPRTV 45
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BLAST of mRNA_M-pyrifera_M_contig113031.2704.1 vs. uniprot
Match: A0A1H8LTL5_9PROT (Uncharacterized protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1H8LTL5_9PROT)

HSP 1 Score: 50.1 bits (118), Expect = 2.140e-6
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    7 MEINIPAVHAEITEAFWRYTHAVIENDIDTVTTLFWHSSHTL 132
            MEINIP V AE+T+AF  Y  A+  ND+D +  LFW S HTL
Sbjct:    1 MEINIPDVVAEVTDAFNHYEKALNSNDVDVLDELFWKSPHTL 42
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BLAST of mRNA_M-pyrifera_M_contig113031.2704.1 vs. uniprot
Match: A0A2W7IXM8_9PSED (Uncharacterized protein DUF3225 n=2 Tax=Pseudomonas TaxID=286 RepID=A0A2W7IXM8_9PSED)

HSP 1 Score: 49.3 bits (116), Expect = 3.830e-6
Identity = 21/41 (51.22%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:   10 EINIPAVHAEITEAFWRYTHAVIENDIDTVTTLFWHSSHTL 132
            +I++PAVHAE+T AF RY  A+  NDI  +  LFWH + T+
Sbjct:    5 QIDLPAVHAEVTIAFQRYEQALTSNDIGVLDELFWHDARTI 45
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BLAST of mRNA_M-pyrifera_M_contig113031.2704.1 vs. uniprot
Match: UPI001D09BD99 (oxalurate catabolism protein HpxZ n=2 Tax=Acidisoma TaxID=512381 RepID=UPI001D09BD99)

HSP 1 Score: 49.3 bits (116), Expect = 4.460e-6
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    4 GMEINIPAVHAEITEAFWRYTHAVIENDIDTVTTLFWHSSHTL 132
             MEIN PA  AE+T  F RY  A++ ND+DT+T LFW S+ T+
Sbjct:    2 SMEINKPAPLAELTAEFERYEVALVTNDVDTLTALFWDSAETI 44
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113031.2704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A2D6G4Q3_9PROT6.490e-1371.43DUF4440 domain-containing protein n=1 Tax=Rhodospi... [more]
A0A0Q8WK67_9BURK4.090e-857.14Uncharacterized protein n=2 Tax=Achromobacter TaxI... [more]
UPI0019EAD4974.340e-854.76Oxalurate catabolism protein HpxZ n=1 Tax=Acetobac... [more]
A0A848NC95_9BURK9.320e-754.76Oxalurate catabolism protein HpxZ n=32 Tax=Alcalig... [more]
A0A1Y2QYG7_9BURK1.290e-657.14DUF4440 domain-containing protein n=1 Tax=Hydrogen... [more]
UPI0019B109AE1.290e-657.14Oxalurate catabolism protein HpxZ n=1 Tax=Rhizobac... [more]
A0A1Q9Y5E2_9PSED1.920e-651.22DUF4440 domain-containing protein n=2 Tax=unclassi... [more]
A0A1H8LTL5_9PROT2.140e-657.14Uncharacterized protein n=2 Tax=Alphaproteobacteri... [more]
A0A2W7IXM8_9PSED3.830e-651.22Uncharacterized protein DUF3225 n=2 Tax=Pseudomona... [more]
UPI001D09BD994.460e-653.49oxalurate catabolism protein HpxZ n=2 Tax=Acidisom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113031contigM-pyrifera_M_contig113031:450..581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size126
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815644.0235345-UTR-M-pyrifera_M_contig113031:449..4551622815644.0235345-UTR-M-pyrifera_M_contig113031:449..455Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig113031 450..455 +
1692277502.3043795-UTR-M-pyrifera_M_contig113031:449..4551692277502.3043795-UTR-M-pyrifera_M_contig113031:449..455Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig113031 450..455 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815644.0376272-CDS-M-pyrifera_M_contig113031:455..5811622815644.0376272-CDS-M-pyrifera_M_contig113031:455..581Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113031 456..581 +
1692277502.3226728-CDS-M-pyrifera_M_contig113031:455..5811692277502.3226728-CDS-M-pyrifera_M_contig113031:455..581Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113031 456..581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113031.2704.1prot_M-pyrifera_M_contig113031.2704.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113031 456..581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113031.2704.1

>prot_M-pyrifera_M_contig113031.2704.1 ID=prot_M-pyrifera_M_contig113031.2704.1|Name=mRNA_M-pyrifera_M_contig113031.2704.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=42bp
MEINIPAVHAEITEAFWRYTHAVIENDIDTVTTLFWHSSHTL
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mRNA from alignment at M-pyrifera_M_contig113031:450..581+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113031.2704.1 ID=mRNA_M-pyrifera_M_contig113031.2704.1|Name=mRNA_M-pyrifera_M_contig113031.2704.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=132bp|location=Sequence derived from alignment at M-pyrifera_M_contig113031:450..581+ (Macrocystis pyrifera P11B4 male)
CGTGGCATGGAAATCAATATCCCCGCGGTACACGCGGAGATCACCGAGGC
GTTCTGGCGCTACACGCATGCAGTGATCGAGAACGATATCGATACGGTCA
CCACACTGTTCTGGCACAGCTCACACACGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113031:450..581+

>mRNA_M-pyrifera_M_contig113031.2704.1 ID=mRNA_M-pyrifera_M_contig113031.2704.1|Name=mRNA_M-pyrifera_M_contig113031.2704.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig113031:450..581+ (Macrocystis pyrifera P11B4 male)
ATGGAAATCAATATCCCCGCGGTACACGCGGAGATCACCGAGGCGTTCTG
GCGCTACACGCATGCAGTGATCGAGAACGATATCGATACGGTCACCACAC
TGTTCTGGCACAGCTCACACACGCTGATGGAAATCAATATCCCCGCGGTA
CACGCGGAGATCACCGAGGCGTTCTGGCGCTACACGCATGCAGTGATCGA
GAACGATATCGATACGGTCACCACACTGTTCTGGCACAGCTCACACACGC
TG
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