mRNA_M-pyrifera_M_contig1130.2701.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1130.2701.1
Unique NamemRNA_M-pyrifera_M_contig1130.2701.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1130.2701.1 vs. uniprot
Match: D7FLT8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLT8_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 5.830e-42
Identity = 73/98 (74.49%), Postives = 79/98 (80.61%), Query Frame = 2 
Query:   23 MASALGRAAMVGVKGIPAAGASRRVAVSDAAKRGFKTNPYVEEWMGKREISEKTFTFTPGVSFGLAMTIVIFPAMVYSNIKSGMETKDAKTGRKREYF 316
            M+SALGRA  VG +G PAAGA RRV    A  RG KTNP+VEEWMGKREISEKTFTFTP VS GL M IV+FP +VY NIK+GMETKDAK GRKREYF
Sbjct:    1 MSSALGRALSVGARGFPAAGAGRRVGEVAARGRGLKTNPHVEEWMGKREISEKTFTFTPKVSLGLLMAIVVFPVVVYGNIKAGMETKDAKEGRKREYF 98
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BLAST of mRNA_M-pyrifera_M_contig1130.2701.1 vs. uniprot
Match: A0A7S3UZX4_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZX4_HETAK)

HSP 1 Score: 72.8 bits (177), Expect = 8.830e-14
Identity = 34/69 (49.28%), Postives = 46/69 (66.67%), Query Frame = 2 
Query:  110 AAKRGFKTNPYVEEWMGKREISEKTFTFTPGVSFGLAMTIVIFPAMVYSNIKSGMETKDAKTGRKREYF 316
            A+ RG K N +VEEW GKREI+E+TFT+T   +  L M + +FPA VY   K  +E +DA  G++REY 
Sbjct:   36 ASIRGLKKNAFVEEWNGKREITEQTFTYTGQTTRSLLMWMGVFPAFVYVMTKGELEKRDASKGKRREYM 104
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1130.2701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLT8_ECTSI5.830e-4274.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3UZX4_HETAK8.830e-1449.28Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1130contigM-pyrifera_M_contig1130:10411..14840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_001290.1
Exons2
Model size482
Cds size297
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1130.2701.1prot_M-pyrifera_M_contig1130.2701.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1130 10433..14677 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815643.794072-UTR-M-pyrifera_M_contig1130:10410..104321622815643.794072-UTR-M-pyrifera_M_contig1130:10410..10432Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1130 10411..10432 +
1692277502.1710339-UTR-M-pyrifera_M_contig1130:10410..104321692277502.1710339-UTR-M-pyrifera_M_contig1130:10410..10432Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1130 10411..10432 +
1622815643.834299-UTR-M-pyrifera_M_contig1130:14677..148401622815643.834299-UTR-M-pyrifera_M_contig1130:14677..14840Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1130 14678..14840 +
1692277502.212568-UTR-M-pyrifera_M_contig1130:14677..148401692277502.212568-UTR-M-pyrifera_M_contig1130:14677..14840Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1130 14678..14840 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815643.8080847-CDS-M-pyrifera_M_contig1130:10432..105581622815643.8080847-CDS-M-pyrifera_M_contig1130:10432..10558Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1130 10433..10558 +
1692277502.1907265-CDS-M-pyrifera_M_contig1130:10432..105581692277502.1907265-CDS-M-pyrifera_M_contig1130:10432..10558Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1130 10433..10558 +
1622815643.821312-CDS-M-pyrifera_M_contig1130:14506..146771622815643.821312-CDS-M-pyrifera_M_contig1130:14506..14677Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1130 14507..14677 +
1692277502.2029727-CDS-M-pyrifera_M_contig1130:14506..146771692277502.2029727-CDS-M-pyrifera_M_contig1130:14506..14677Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1130 14507..14677 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1130.2701.1

>prot_M-pyrifera_M_contig1130.2701.1 ID=prot_M-pyrifera_M_contig1130.2701.1|Name=mRNA_M-pyrifera_M_contig1130.2701.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
MASALGRAAMVGVKGIPAAGASRRVAVSDAAKRGFKTNPYVEEWMGKREI
SEKTFTFTPGVSFGLAMTIVIFPAMVYSNIKSGMETKDAKTGRKREYF*
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mRNA from alignment at M-pyrifera_M_contig1130:10411..14840+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1130.2701.1 ID=mRNA_M-pyrifera_M_contig1130.2701.1|Name=mRNA_M-pyrifera_M_contig1130.2701.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4430bp|location=Sequence derived from alignment at M-pyrifera_M_contig1130:10411..14840+ (Macrocystis pyrifera P11B4 male)
AAACGCACAGCGAAACCTTGCAATGGCTTCCGCTCTAGGTAGAGCCGCCA
TGGTGGGAGTCAAGGGTATCCCTGCTGCAGGAGCAAGCCGAAGAGTGGCG
GTGTCTGACGCTGCGAAACGGGGATTCAAGACGAACCCGTACGTCGAGGT
GAACGAAGAAAGTTGTCTTTGCTTTTCCACGTTGTACTACGTATGTATAT
TACATACAAAGAGACAGGCAACAGCAGCGATGTTGCAGGTATTGCAGAGT
GTTTTGGAGCCTTCGTGTCGAGTGCGATGCATCTCTTCCCGCACACGGAC
AAGTTGATGTAAAGGCGCAGAGGACCTGGGCCGCTTGGCGTAGCAATGGT
CAGCCGGCTCTCGAGCAGAACGACAGCGAAACAGCGAAACGATTTTCCTT
GCTCTCCATGTCGAACTACTGCTGTCGCTGTACCCTGGCACGTAGTTGTA
GACACTATTAATAGCCTGTCCGATGTTTGCACGTGTCAACACGATTACCA
ACCCTCTAATCACTTGGCGCCCTGATCCCACGCCGACCTGATTAGCTAGA
CCTAACCCCACCCGGACCTGAGCCCTGCAATCCGACCCTGGGTATGTAAA
TAGCCGCCGGCAAGGCCCACCAGCACCCGGATCCCACACGACTTCACTTT
CTCCACCAAAATCGGGGTTTCCACTGACAGAACCGCCATGGCCAAGCGGG
AACTGCTCTAAAACTAGTATAACAAATATTTGCGCCCTCGACGTTTCGAC
GAGCTCTAATTGCACACCGGGTGTACAACTTTGATATACGCCACGCACCT
CCATCCTTCTCCCGCTTGGCACCCTGATCCCACCCCGACCTGGTCCCACC
CGGATCTAAGCCCTCCAAACTGAATCTGGTGTACCATTCATCAGCCACCC
GCAGCGTCCAGCTGGCACCCTGAGTCCACCCCGCGACTTTTTTTTTTTTT
TTAATCAATAGTTTTACTTTCCAGCCTACTCGTACCTGGTATAATAGAAG
GTTTTGCCCTCAGCGATCTTCTGGACAAGCCGTGGTCACAGGCGTCGTCC
CTTCTCCCCCCCGGTACGTGCCTTTATTTTTTGTCGCGAATAGGGTTCAG
CATTTCCGCTGCTCGTCGATTTTCATCGAATGTAGCTTACTCACGCTCTC
ACGCTTGCCGCTAGTCATTTTTTTCATGCACGAAATTGATCTTGATAGGC
ACGCGGACCACCTACCAAGCCACCGGGGACGCCGGCTGACTTGAAGACTT
GAACCAATAAAATCAAGGGTTTCCACCAAATACAGAAGAGCAGCACGGAA
ATTGTACGCGCCCACTTCGCGACGAGGTCCCTAATTGCCGCACTACCTTG
CAAAGTCGTGCAACGCCACCACTGCTGTATGATTGGTTGAGGCTGGCGTT
TCGGCCGGCCGGCGTTCTTTGTTGACGCCACCGAAACACGCGGGGACCCG
CGCGACCGGCCCTGCCGGCCCTGACTGGGGTTTAGGGTTGCAAGGTGGTG
TTGCAGAGGCACCCCGTTCTGCGTTCGGGGCTGCCGGTATACGTCGAGAG
CAGATCATGCTCGACATGTTGTAAAATGAAAAGTGCCATATTGATAGAAG
ACCTTTGGTTCGGTAGAGGTATGTCGTCATGAAGTTTCTGAGGGTCGCTT
ACCTCACTTAGCCTCTCCTATGTCGCTTCATATTAATATAATGAGAGTAT
ACAGTAGTTCGAAGTACAATGAACCTACGCAATGGACATGCTCCGTACTG
ATATCACACGCTTAAGCACGTCCAACTTTTACAAGTAAGCAAAGGCATCC
ATCTACGTGCAGGCTACATCAACCGCAACTTACTATCTCCCCCGTGCTGC
GCACAGCAACATGGTGACCTACCGTAACGCCTCTCTCTCTCTGTCGCCCA
ACACCCTCGCTGAAACCATCCTAATCTAACTCTTCTCGTAGTTGCAACCA
CAGCAGTTTGTACCCAAACCGTGGGTGCACTACGAGTAGACTACTGCTGT
GGGTGCCCTGCTAGTAGTAAAGGGGTGGCTGATTTAGCGTCCGGGATGTT
GCCTCCCAAACCTTGGTGTACATCAAGGCGTCCGGGATGTTGCCTCCCAA
ACCTTGGTGTACATCGCCTTGTGCAGCATTGCCGGTAGCCCGCATGGCGG
TACGTATGGACTCGGCCCGCATGAGCTAAACATCACGGGCACAAAAACTA
ACCCTTGAATGGTCACGTATGGACTCGGTCCGCATGAGTTAAACATCACG
GGCACTAAAACTTACCCTTGAATGGTCTCAAGAGTCGGCCAACTCGTATA
GAGAGACGGACCACTACGAAATCAAACTGTCCAGGACTGCTTTAACATTG
TCTCCGGTATGCTTCCTTCGTCTCAAACATCGTCTCGTGTCGTGCGTGCT
GACGTACAGGACCTGGTGCAATCGAACATCAGAAGCATGCCCAACTACTG
ACTATTAATACTGTTGCACCATGTATAACTCAGCCCGACGGGGCAAACAT
CCATGCCTTGCCAACCGACCGTTCTCACGACATGAGTTTAAGAGTACCTA
CAGCCTACAGCCCAGGTACTGCTGTAGTTACTATCTGCTTTTTCTACGGT
GGTGGACTGAAGTATCAAGGTACTTTTATACGTACTACGGCTTCTGCTGG
TGTACCCCAATTATCTTTTGGCACACTACAAAAACTCAATATAGCGGATT
CCCCTATGATGGTAATTGTTCCCCTGTCAGTTTGCTGTCGGCGAAGGTAC
TATTACGGGGGACCATAGTAAATAGGACCAAATTGTTAGTAAAAATATGG
AAATATGTGGGTGTCTGTGTGCACCGTAGGTCCTATTATTAACTATGATC
CCCCGTACTAGCCATTTTCCGGAGTCGGTCGGGGACGCACTAACCGCCCT
TTCTGCTTCATTATGATGTTTCTGCTTTGTTCTGGTACCAAATATTTACC
ACCAGTAACTTTGACGCAGCCTTCATACAAACTCGTTTCACCAGCAATAC
CAGTATGAGCACACGAAAACGGACCATGAATAATACTCGTGTATCGTGGT
GTATCCGCCTGTCCTCTGCCTCTTGTCGTGTAGAGACTCCCTCGTGAATA
CCTCCTCGATCAAAAACACCCGCAATATTGCGTTGGGTACACATGTAATG
CAACATGCAGTAAAAGATGGGCAATGCACGACGCGGCTGCAGTATTTTGG
GTACATCGATAGAGCTTTCCTGCCGAATGCTCACAACGTATACCCGAGGG
CATGGTGCGGTTGTACTGCCGACTGATGTAGCGGACTGTAAAAAAAAGAC
TCCTGTACCTGGCTTGCTTGTATCCGGTACTGGCCAGCCCCTGCTGTGGG
AATTAACTGCAGCGTATTTACTTGTATATACGAAAACACTCCCATGTACC
CAAGGGTATTTTCAGCACAACCTCGTTTGTGGTGGCATTTCTCCATTGAC
CCCTTTAGAAATTGCCCTCTGCATTGGGGACAAGCTGCCCGAATGTAATG
TTGGATCATTTTTGCAGCAGTCAGGGGTATGTACCGTGTGGCACTATCAC
CGTAGGGTGATAAGTTAACACACCCCCTCCGACGATTTTTTAAGCCGATT
TTCTCGACAACGGAGAGGAGGGTGCAAGCGCCGAGCGATGAGTCTGTGGA
AAGCTCTCGACGATTTCTTTTTGCAGTTCGACATTTTGCGTTGTGAATGC
TCCTCATGTTTGGAGAAACTCGGCTCGGACATCTATCCCAGGGGGTGTGG
TATCTCATCACCCGCGTGATAGTGTTATACGGCAGCAAGCCGGCAGATGA
AAGTACATTGTTGTCGGCTGGAATTCAAGAGAAGCCATCATTTGAAGCCT
ATATAGACCAATAATTCGTACGAGTTGTGCTGGACTTGCCGTCCATCTCG
AGGGCACGAGCGGCTATACGTAAAACGAAGCAACAACTGAGACATGCAAC
AGCTCGTCCCTCGAACTTCCGCCCCCCCCCCCCCCCCATACGTCTACCGT
CGTGAGTGACATGAGTACGCCCCCCCCCCCGTTAGCTTAGCGTATCCCAC
CATGAACTCGTAACCCTTTCGCTTGCTTGGTCGTACTCGCGCACAGGAAT
GGATGGGGAAGCGAGAAATTTCGGAGAAAACGTTCACCTTCACCCCTGGC
GTATCGTTTGGGTTGGCCATGACCATCGTCATCTTCCCGGCGATGGTTTA
CAGCAACATCAAGTCGGGCATGGAAACAAAGGACGCCAAGACGGGCAGGA
AGCGCGAGTACTTTTAGATTGGTGACGTTAAAAAAAGCCCCACCGTGGTC
GAACGAACGGAAGCACGCTGCGTATGGATGCACGGGAAATTCTGCATCTT
GCGTTGCAGTAAAGCTCTCGACGAGAGAAAGAAAGAGGGTTCTGTTGTAG
GTTCGCAACGGGCAGGGGCGAGAGGGGAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1130:10411..14840+

>mRNA_M-pyrifera_M_contig1130.2701.1 ID=mRNA_M-pyrifera_M_contig1130.2701.1|Name=mRNA_M-pyrifera_M_contig1130.2701.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig1130:10411..14840+ (Macrocystis pyrifera P11B4 male)
ATGGCTTCCGCTCTAGGTAGAGCCGCCATGGTGGGAGTCAAGGGTATCCC
TGCTGCAGGAGCAAGCCGAAGAGTGGCGGTGTCTGACGCTGCGAAACGGG
GATTCAAGACGAACCCGTACGTCGAGATGGCTTCCGCTCTAGGTAGAGCC
GCCATGGTGGGAGTCAAGGGTATCCCTGCTGCAGGAGCAAGCCGAAGAGT
GGCGGTGTCTGACGCTGCGAAACGGGGATTCAAGACGAACCCGTACGTCG
AGGAATGGATGGGGAAGCGAGAAATTTCGGAGAAAACGTTCACCTTCACC
CCTGGCGTATCGTTTGGGTTGGCCATGACCATCGTCATCTTCCCGGCGAT
GGTTTACAGCAACATCAAGTCGGGCATGGAAACAAAGGACGCCAAGACGG
GCAGGAAGCGCGAGTACTTTTAGGAATGGATGGGGAAGCGAGAAATTTCG
GAGAAAACGTTCACCTTCACCCCTGGCGTATCGTTTGGGTTGGCCATGAC
CATCGTCATCTTCCCGGCGATGGTTTACAGCAACATCAAGTCGGGCATGG
AAACAAAGGACGCCAAGACGGGCAGGAAGCGCGAGTACTTTTAG
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