mRNA_M-pyrifera_M_contig112961.2697.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112961.2697.1
Unique NamemRNA_M-pyrifera_M_contig112961.2697.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig112961.2697.1 vs. uniprot
Match: A0A5C7Q6S2_9DELT (DUF5131 family protein (Fragment) n=1 Tax=Desulfurellales bacterium TaxID=2482794 RepID=A0A5C7Q6S2_9DELT)

HSP 1 Score: 85.9 bits (211), Expect = 8.610e-20
Identity = 41/81 (50.62%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:   67 INHVIVGGESGLDSRPFRGEWAEDLRLQCRHTNVPFFFKQFGSNPYYGIETESEPKPLYLSDRKGGNPDEWPYGFNVRQMP 309
            I+  IVGGESG  +RPF  +WA DLR QC+   VPFFFKQ G++ + G        PL L+D+KGG+P EWP    VR+ P
Sbjct:    9 IDWCIVGGESGHGARPFNIQWARDLRDQCKAAGVPFFFKQAGAHAHCG----DGGYPLALTDKKGGDPSEWPEDLRVREFP 85
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BLAST of mRNA_M-pyrifera_M_contig112961.2697.1 vs. uniprot
Match: A0A2T1FXV2_9CYAN (Phage Gp37/Gp68 family protein n=1 Tax=filamentous cyanobacterium Phorm 6 TaxID=2107706 RepID=A0A2T1FXV2_9CYAN)

HSP 1 Score: 86.7 bits (213), Expect = 4.380e-18
Identity = 51/122 (41.80%), Postives = 65/122 (53.28%), Query Frame = 1 
Query:    1 LGLSCEPLLEEIDLRP-------------WLHNDMINHVIVGGESGLDSRPFRGEWAEDLRLQCRHTNVPFFFKQFGSN-----PYYGIETESEPKPLYLSDRKGGNPDEWPYGFNVRQMPE 312
            L LSCEPLLE +DL               WL  D ++ +I+GGESG+ +RP   +W   +  QCR TNV  F KQ GSN     PY     ++  + L   DRKGGN DE+P    +RQ PE
Sbjct:  193 LFLSCEPLLEAVDLTKIYRISNLTQTELTWL--DYLHWIILGGESGVGARPCHIDWIRSIVQQCRPTNVAVFVKQLGSNSIQSTPYIDGVAQNNFQ-LKFKDRKGGNIDEFPTDLQIRQFPE 311
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BLAST of mRNA_M-pyrifera_M_contig112961.2697.1 vs. uniprot
Match: A0A218QAM4_9CYAN (Phage Gp37Gp68 family protein n=1 Tax=Nodularia sp. NIES-3585 TaxID=1973477 RepID=A0A218QAM4_9CYAN)

HSP 1 Score: 84.3 bits (207), Expect = 2.580e-17
Identity = 48/115 (41.74%), Postives = 59/115 (51.30%), Query Frame = 1 
Query:    7 LSCEPLLEEIDL-------------RPW-LHNDMINHVIVGGESGLDSRPFRGEWAEDLRLQCRHTNVPFFFKQFGSNPYYGIETESEPKPLYLSDRKGGNPDEWPYGFNVRQMP 309
            LSCEPLLEEID                W L N+ I+ VIVGGESG +SRP   EW + +  QC  +N P F KQ GSN Y   +           DRKGG+  E+P    +R+ P
Sbjct:  181 LSCEPLLEEIDFVQADIFQKLISDDHEWELVNEYIHWVIVGGESGPNSRPCHVEWIQSIVTQCHSSNTPVFVKQLGSNVYLNQQR------FKTHDRKGGDIQEFPTQLRIRKFP 289
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BLAST of mRNA_M-pyrifera_M_contig112961.2697.1 vs. uniprot
Match: A0A6M0JCC8_9NOSO (Phage Gp37/Gp68 family protein n=3 Tax=Nostocaceae TaxID=1162 RepID=A0A6M0JCC8_9NOSO)

HSP 1 Score: 84.3 bits (207), Expect = 3.160e-17
Identity = 47/115 (40.87%), Postives = 62/115 (53.91%), Query Frame = 1 
Query:    7 LSCEPLLEEIDLRP-------------W-LHNDMINHVIVGGESGLDSRPFRGEWAEDLRLQCRHTNVPFFFKQFGSNPYYGIETESEPKPLYLSDRKGGNPDEWPYGFNVRQMP 309
            LSCEPLLEEIDLR              W L N+ I  ++VGGESG +SRP   EW E +  QC+ +  P F KQ G+N  +      E +     D+KGG+ +E+P    VR+ P
Sbjct:  197 LSCEPLLEEIDLRQGGAIQKLISDSYEWELVNEDIQWIVVGGESGPNSRPCHMEWIESIVQQCQQSQTPVFVKQLGANAIF------EGQRFKTRDKKGGDIEEFPQELQVREFP 305
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BLAST of mRNA_M-pyrifera_M_contig112961.2697.1 vs. uniprot
Match: UPI001687BDA6 (phage Gp37/Gp68 family protein n=1 Tax=Coleofasciculus sp. FACHB-T130 TaxID=2692792 RepID=UPI001687BDA6)

HSP 1 Score: 82.4 bits (202), Expect = 1.460e-16
Identity = 46/121 (38.02%), Postives = 62/121 (51.24%), Query Frame = 1 
Query:    7 LSCEPLLEEIDL-----------------RPWLHNDMINHVIVGGESGLDSRPFRGEWAEDLRLQCRHTNVPFFFKQFGSNPYYGIETES--EPKPLYLSDRKGGNPDEWPYGFNVRQMPE 312
            LSCEPLLEEI+L                       D+I+ VIVGGESG ++RP   +W   +  QC+H   P F KQ GS P    +TE+      L L  +KGG+ +E+P    +R+ PE
Sbjct:  178 LSCEPLLEEIELFNVDGEVSLAMQALDERETMFPADVIDWVIVGGESGHNARPCHLDWIRSIVSQCQHCETPVFVKQLGSLPLQSQKTETGFTTSDLRLKSKKGGDLEEFPNDLKIREFPE 298
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BLAST of mRNA_M-pyrifera_M_contig112961.2697.1 vs. uniprot
Match: A0A7X6HQB0_9CYAN (DUF5131 family protein n=1 Tax=Microcoleus sp. SU_5_3 TaxID=2720482 RepID=A0A7X6HQB0_9CYAN)

HSP 1 Score: 82.0 bits (201), Expect = 1.850e-16
Identity = 48/102 (47.06%), Postives = 57/102 (55.88%), Query Frame = 1 
Query:    7 LSCEPLLEEIDLRPWLHNDMINHVIVGGESGLDSRPFRGEWAEDLRLQCRHTNVPFFFKQFGS----NPYYGIETESEPKPLYLSDRKGGNPDEWPYGFNVR 300
            LSCEPLLE IDLR  L N  I+ VIVGGESG  +RP   EW   +  QC+  NVP F KQ G+    +  Y  E     + L L DRKGG+  EWP     +
Sbjct:  190 LSCEPLLESIDLRSHLTN--IDWVIVGGESGNKARPCHVEWIRSVIDQCKLANVPVFVKQLGAVAIESKGYFFENHGNYE-LKLRDRKGGDMQEWPIDLRFK 288
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BLAST of mRNA_M-pyrifera_M_contig112961.2697.1 vs. uniprot
Match: A0A6L5FZT9_9ACTN (DUF5131 family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A6L5FZT9_9ACTN)

HSP 1 Score: 81.6 bits (200), Expect = 1.880e-16
Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:    7 LSCEPLLEEIDLRPWLHNDMINHVIVGGESGLDSRPFRGEWAEDLRLQCRHTNVPFFFKQFG 192
            LSCEPLL E+DL PWL  D ++ VIVGGESG   RP   EW   +R QC    +PFFFKQ+G
Sbjct:  167 LSCEPLLGEVDLSPWLDPDSLHWVIVGGESGPQHRPVAIEWIRAIRDQCLDAGIPFFFKQWG 228
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BLAST of mRNA_M-pyrifera_M_contig112961.2697.1 vs. uniprot
Match: UPI000721025B (DUF5131 family protein n=1 Tax=Nostoc sp. NIES-3756 TaxID=1751286 RepID=UPI000721025B)

HSP 1 Score: 81.6 bits (200), Expect = 2.450e-16
Identity = 46/115 (40.00%), Postives = 59/115 (51.30%), Query Frame = 1 
Query:    7 LSCEPLLEEIDL-------------RPW-LHNDMINHVIVGGESGLDSRPFRGEWAEDLRLQCRHTNVPFFFKQFGSNPYYGIETESEPKPLYLSDRKGGNPDEWPYGFNVRQMP 309
            LSCEPLLEEID                W L N+ I+ +IVGGESG +SRP   EW E +  QC+ +  P F KQ GSN +   +           D+KGGN  E+P    +R+ P
Sbjct:  170 LSCEPLLEEIDFIQAGVFQRLINDQYEWELVNEDIDWIIVGGESGTNSRPCHIEWIESIVQQCQQSKTPVFVKQLGSNAFLNHQQ------FDTRDKKGGNIQEFPEHLQIREFP 278
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BLAST of mRNA_M-pyrifera_M_contig112961.2697.1 vs. uniprot
Match: A0A2K8T906_9NOSO (Bacteriophage protein gp37 n=2 Tax=Nostoc flagelliforme TaxID=1306274 RepID=A0A2K8T906_9NOSO)

HSP 1 Score: 81.3 bits (199), Expect = 4.630e-16
Identity = 45/115 (39.13%), Postives = 63/115 (54.78%), Query Frame = 1 
Query:    7 LSCEPLLEEIDLRP-------------W-LHNDMINHVIVGGESGLDSRPFRGEWAEDLRLQCRHTNVPFFFKQFGSNPYYGIETESEPKPLYLSDRKGGNPDEWPYGFNVRQMP 309
            LSCEPLLE+IDLR              W L N+ I  ++VGGESG +SRP   EW E +  QC+ +N   F KQ G+N  +G +           ++KGG+ +E+P    VR++P
Sbjct:  201 LSCEPLLEDIDLRQGGAIQKLISDSYEWELVNEDIQWIVVGGESGPNSRPCHIEWLESIVQQCQQSNTKVFVKQLGANAIFGGQQ------FKTRNKKGGDIEEFPEYLKVRELP 309
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BLAST of mRNA_M-pyrifera_M_contig112961.2697.1 vs. uniprot
Match: A0A7Y5KWF6_9DELT (Phage Gp37/Gp68 family protein n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A7Y5KWF6_9DELT)

HSP 1 Score: 81.6 bits (200), Expect = 4.990e-16
Identity = 39/97 (40.21%), Postives = 56/97 (57.73%), Query Frame = 1 
Query:   67 INHVIVGGESGLDSRPFRGEWAEDLRLQCRHTNVPFFFKQFGSNPYYGIET-ESEPKP--------------LYLSDRKGGNPDEWPYGFNVRQMPE 312
            ++ V+VGGESG  SRP+  +WA +L  QCR   VP F KQ G++P+  I   ES P P              +++ D+KGG+P+EWP    +R+ PE
Sbjct:  263 LSWVVVGGESGPSSRPYHVDWARELIAQCRDAAVPIFHKQLGASPHDRISNVESWPLPDSRFHGLPNSDDVVVFIKDKKGGDPEEWPEALRIREWPE 359
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112961.2697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5C7Q6S2_9DELT8.610e-2050.62DUF5131 family protein (Fragment) n=1 Tax=Desulfur... [more]
A0A2T1FXV2_9CYAN4.380e-1841.80Phage Gp37/Gp68 family protein n=1 Tax=filamentous... [more]
A0A218QAM4_9CYAN2.580e-1741.74Phage Gp37Gp68 family protein n=1 Tax=Nodularia sp... [more]
A0A6M0JCC8_9NOSO3.160e-1740.87Phage Gp37/Gp68 family protein n=3 Tax=Nostocaceae... [more]
UPI001687BDA61.460e-1638.02phage Gp37/Gp68 family protein n=1 Tax=Coleofascic... [more]
A0A7X6HQB0_9CYAN1.850e-1647.06DUF5131 family protein n=1 Tax=Microcoleus sp. SU_... [more]
A0A6L5FZT9_9ACTN1.880e-1658.06DUF5131 family protein n=1 Tax=Actinomycetia bacte... [more]
UPI000721025B2.450e-1640.00DUF5131 family protein n=1 Tax=Nostoc sp. NIES-375... [more]
A0A2K8T906_9NOSO4.630e-1639.13Bacteriophage protein gp37 n=2 Tax=Nostoc flagelli... [more]
A0A7Y5KWF6_9DELT4.990e-1640.21Phage Gp37/Gp68 family protein n=1 Tax=Polyangiace... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112961contigM-pyrifera_M_contig112961:59..385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score88.2
Seed ortholog evalue2.6e-15
Seed eggNOG ortholog1254432.SCE1572_47760
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF5131)
EggNOG OGsCOG4422@1,COG4422@2
COG Functional cat.F
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size327
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815643.3698027-CDS-M-pyrifera_M_contig112961:58..3851622815643.3698027-CDS-M-pyrifera_M_contig112961:58..385Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112961 59..385 +
1692277501.8607688-CDS-M-pyrifera_M_contig112961:58..3851692277501.8607688-CDS-M-pyrifera_M_contig112961:58..385Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112961 59..385 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112961.2697.1prot_M-pyrifera_M_contig112961.2697.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112961 59..385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112961.2697.1

>prot_M-pyrifera_M_contig112961.2697.1 ID=prot_M-pyrifera_M_contig112961.2697.1|Name=mRNA_M-pyrifera_M_contig112961.2697.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
LGLSCEPLLEEIDLRPWLHNDMINHVIVGGESGLDSRPFRGEWAEDLRLQ
CRHTNVPFFFKQFGSNPYYGIETESEPKPLYLSDRKGGNPDEWPYGFNVR
QMPEKQEV*
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mRNA from alignment at M-pyrifera_M_contig112961:59..385+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112961.2697.1 ID=mRNA_M-pyrifera_M_contig112961.2697.1|Name=mRNA_M-pyrifera_M_contig112961.2697.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig112961:59..385+ (Macrocystis pyrifera P11B4 male)
CTCGGGCTGAGCTGTGAACCCCTGCTGGAAGAGATCGACCTGCGTCCCTG
GCTGCACAACGACATGATCAACCATGTGATCGTCGGTGGTGAATCGGGAC
TGGATTCCCGCCCGTTTCGGGGAGAGTGGGCTGAGGATCTTCGGCTGCAG
TGCAGACACACGAATGTCCCATTCTTTTTCAAGCAGTTCGGATCGAATCC
TTATTACGGAATCGAAACCGAGTCTGAACCGAAGCCGCTGTATCTCTCCG
ATCGGAAGGGTGGCAACCCGGACGAATGGCCCTACGGTTTCAATGTTCGT
CAGATGCCTGAAAAGCAGGAGGTGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112961:59..385+

>mRNA_M-pyrifera_M_contig112961.2697.1 ID=mRNA_M-pyrifera_M_contig112961.2697.1|Name=mRNA_M-pyrifera_M_contig112961.2697.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig112961:59..385+ (Macrocystis pyrifera P11B4 male)
CTCGGGCTGAGCTGTGAACCCCTGCTGGAAGAGATCGACCTGCGTCCCTG
GCTGCACAACGACATGATCAACCATGTGATCGTCGGTGGTGAATCGGGAC
TGGATTCCCGCCCGTTTCGGGGAGAGTGGGCTGAGGATCTTCGGCTGCAG
TGCAGACACACGAATGTCCCATTCTTTTTCAAGCAGTTCGGATCGAATCC
TTATTACGGAATCGAAACCGAGTCTGAACCGAAGCCGCTGTATCTCTCCG
ATCGGAAGGGTGGCAACCCGGACGAATGGCCCTACGGTTTCAATGTTCGT
CAGATGCCTGAAAAGCAGGAGGTGTGACTCGGGCTGAGCTGTGAACCCCT
GCTGGAAGAGATCGACCTGCGTCCCTGGCTGCACAACGACATGATCAACC
ATGTGATCGTCGGTGGTGAATCGGGACTGGATTCCCGCCCGTTTCGGGGA
GAGTGGGCTGAGGATCTTCGGCTGCAGTGCAGACACACGAATGTCCCATT
CTTTTTCAAGCAGTTCGGATCGAATCCTTATTACGGAATCGAAACCGAGT
CTGAACCGAAGCCGCTGTATCTCTCCGATCGGAAGGGTGGCAACCCGGAC
GAATGGCCCTACGGTTTCAATGTTCGTCAGATGCCTGAAAAGCAGGAGGT
GTGA
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