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Homology
BLAST of mRNA_M-pyrifera_M_contig11285.2673.1 vs. uniprot
Match: D8LM62_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM62_ECTSI) HSP 1 Score: 125 bits (314), Expect = 3.420e-34 Identity = 76/134 (56.72%), Postives = 89/134 (66.42%), Query Frame = 1
Query: 37 LMEYFCYAVKPDPSFHGSITFVFDQEPDDESGGDGAEAEARQXXXXXXXXPKPELEVSVTIEKVYIPGVNNPGTGI----NRPRVVVTLGGMPAGSGAGRAMGRVRVPYKQFLLVYSGKASARDIGNLAMKRKV 426
+ME+FCY+VKPDPSF GS+TFVFDQ D++ + AR KPELE+SVT+EKV V N G RPRV+VT GG P G AG A GRVRVPYKQFLLVYSGKA+A+DI LAM+ KV
Sbjct: 1 MMEFFCYSVKPDPSFSGSMTFVFDQVLDEDMEDGSWDGVARD---------KPELELSVTVEKVEEDDVKNGEAGNVSRNRRPRVLVTRGGPPVG--AGEAKGRVRVPYKQFLLVYSGKATAKDIVRLAMRGKV 123
BLAST of mRNA_M-pyrifera_M_contig11285.2673.1 vs. uniprot
Match: A0A6H5JDC8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDC8_9PHAE) HSP 1 Score: 121 bits (303), Expect = 2.150e-29 Identity = 74/133 (55.64%), Postives = 87/133 (65.41%), Query Frame = 1
Query: 40 MEYFCYAVKPDPSFHGSITFVFDQEPDDESGGDGAEAEARQXXXXXXXXPKPELEVSVTIEKVYIPGVNNPGTGI----NRPRVVVTLGGMPAGSGAGRAMGRVRVPYKQFLLVYSGKASARDIGNLAMKRKV 426
ME+FCY+VKPDPSF GS+TFVFDQE D++ + AR KPELE+SVT+EKV V N G RPRV+VT GG P G AG A GRVRVPYK FLL+YSGKA+A+DI LAM+ V
Sbjct: 1 MEFFCYSVKPDPSFSGSMTFVFDQELDEDMEDGTWDGVARD---------KPELELSVTVEKVGEDDVKNGEAGDLPRNRRPRVLVTRGGPPVG--AGEAKGRVRVPYKHFLLMYSGKATAKDIVRLAMRGNV 122
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 426 |
| Cds size | 426 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815642.019587-CDS-M-pyrifera_M_contig11285:2586..2652 | 1622815642.019587-CDS-M-pyrifera_M_contig11285:2586..2652 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig11285 2587..2652 + |
| 1692277501.2050502-CDS-M-pyrifera_M_contig11285:2586..2652 | 1692277501.2050502-CDS-M-pyrifera_M_contig11285:2586..2652 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig11285 2587..2652 + |
| 1622815642.0451722-CDS-M-pyrifera_M_contig11285:8187..8359 | 1622815642.0451722-CDS-M-pyrifera_M_contig11285:8187..8359 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig11285 8188..8359 + |
| 1692277501.215051-CDS-M-pyrifera_M_contig11285:8187..8359 | 1692277501.215051-CDS-M-pyrifera_M_contig11285:8187..8359 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig11285 8188..8359 + |
| 1622815642.0595818-CDS-M-pyrifera_M_contig11285:9674..9862 | 1622815642.0595818-CDS-M-pyrifera_M_contig11285:9674..9862 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig11285 9675..9862 + |
| 1692277501.2237566-CDS-M-pyrifera_M_contig11285:9674..9862 | 1692277501.2237566-CDS-M-pyrifera_M_contig11285:9674..9862 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig11285 9675..9862 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig11285.2673.1 >prot_M-pyrifera_M_contig11285.2673.1 ID=prot_M-pyrifera_M_contig11285.2673.1|Name=mRNA_M-pyrifera_M_contig11285.2673.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
SEHEKDHALVLDLMEYFCYAVKPDPSFHGSITFVFDQEPDDESGGDGAEA EARQAGGDGESAPKPELEVSVTIEKVYIPGVNNPGTGINRPRVVVTLGGM PAGSGAGRAMGRVRVPYKQFLLVYSGKASARDIGNLAMKRKV back to topmRNA from alignment at M-pyrifera_M_contig11285:2587..9862+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig11285.2673.1 ID=mRNA_M-pyrifera_M_contig11285.2673.1|Name=mRNA_M-pyrifera_M_contig11285.2673.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=7276bp|location=Sequence derived from alignment at M-pyrifera_M_contig11285:2587..9862+ (Macrocystis pyrifera P11B4 male) TCCGAACACGAAAAGGACCATGCTCTCGTGTTGGACCTCATGGAGTACTT
CTGCTACGCTGTCAAGGTAAGCTCCAGCTAACTACAGCTTAGCAGTCGTG
CTTACCACTGGTGGTACCTGTGGTACCTGTAGTACCTACCAAGTATCACT
CTCTCTGCGAGCACGTACATACTTACTCTAACCGTTTCGCGTACGTACAG
ACGGTGATCCCAACAGAAGAAGCTACTCGGTCCCGAAAGCCCTCCTGAAG
ACCAGCTGACTCTCTCGTCGTGACGCGTGCCATGGCGCCTGCCTGCTCTC
CTACTCTGTCGGCACCGGCCTGCGTTAGACCCTGTTTGTTCTCACGCCGA
CGCCCGCGGTGACGCTTCCGCTCTATCCCCGGTGCCCCCCTTGTCCTCAC
CGGCTTCGTTCCTTAGCGTTGCCTCTGGCCCTCCTTGCCGTGCTCGCGGG
AGCAGGGAGGAGTATGTTCTCGGTTCCGTGGGAGATCCTCTGCCGCCCGA
GAAATGAGCTCAACCTCGTGTGCCGCTTTCCGCCTCCTCTGACGAGTCGC
CGCAACGGCAGGCGGTGGAAGAGCTTACGCCTCGGTCAGGTAGTCAGCGA
TCTATCTATAATATCTACAAGTTGTACCGTATAACACTATCACACCCCGG
TGATAGTATATCACACCCCCTCGGACGATTGTCAATGTCACAACGGGGAA
GTCGTATTGAATACGACGAGCGATGCGCCGAGATGCAACCTTCTCGACGA
AATCTTGATCTTTCACGCCCCGTACAGCTCATGAGCTAGCTCATCTGTCG
CGTATAGCTCAAGCTTCAAAAACAGCTCAAGCCGGGGGAAACATGTTTAG
CTCATGTAGCCCCTATAGCTCATCTCGGGGGCAGATGAGCTAACTTATGT
AGCTCCTATAGCTCAGCCTGGGCAAATGTATGTAGATGAGCTACGAATCC
TCCATAGCTCAAAGCATTGAGAACATGGGCAGATGAGCTGCCGCCTATAG
CTCAAGCCAGGGGAAACATGTGTAGCTCATGTAGCTCCTTTAGCTCATCA
CGGGGGCAGAAGAGCTAGCTCATGTAGCTCCTATAGCTCAGTCTAGGAAA
ATATGTGTAGGTGGGCTATCTTCTGTAGCTCGAGTCTTCAAAACATGTGC
AGATGAGCTACCACCTAAGCTCAAGCAGGAAAAACGTGTGCAGATGAGAT
ATCGCCTATAGCTAGCCCCCGGAGAACGCCATCATAGCTCATGTACGCAG
CTATTGTAGCTCTTTCTCGGCATTACATGCATGTAAGACAAGTAGCTGAA
AAAGCCCACCCTCCGGGACAAGTGCGAATGTATAAGAATAATATGGGTTG
TACCGCTTATTTCCATGCGTATTAAACTTCATCGACGGTACGAACGACAG
TCAATATTGATGTTGTTATTAGCGTTCTTGAATGCTCATACTTGACTCGT
ACATGAAAATATCATGAACATAAGTAGTATGGCTGCTGCTAGTGGTGCAC
TGCAACGCCAGCGAAAAGCCAACTCGCCAACCCACTCACCCACCACATAT
TCATAAGGCTATATTGGATCGCAGCATCATCTGAATCCCGGACATACCGT
TTCAACTTCCGTGACTGGGGCCTACCACCAGGTGCAAAGAGGAGACAGAG
AGGCAGAAACAAAAAACTATCTATCCGTACATCGCCGAAAAAACACGCCG
ACAACAGATGAACTGTGAGGGGACATCACAAAACGAAACACAGAAGATCC
GCCGATGCCCCCGTTTATCCCTAAGGCGTCTACGTGGAACTTTGGGTTTC
CCCCCTGTGCTCGCCGAAGACGTCCTCGTCAGACCGGGTAGCTGTTTCGC
TGGGTAAGGTACACACCGCCTAAACCCGCTTGGTGGTTGTATGTCACGAA
TGGCTGTCTCCTTGGTCTCCTGTTGGTGAGCACAGTGTGAGAAGATGTAC
AGGACGCGTAAGCACGGAACAGGCGAGGCCTCTCGAACACACATCATGTA
CGGTACTGCTGTATTTTTTTGTTTTGTTAATACATAAAGGTCAGCCGTGA
AAGAAACACAATACGTCAGCCGCAGACAAGAAACAACAAGCTGCCGTACG
GCCATCGTTGCTGCTGTGCTCGTGCGAGAGTACACCAAACACCTGGACGA
AAAATGAAACCCCGCACAGCCACGAGTACAGCTCGCTTGCATCCACCTTG
CGACTACAGCGGTACAGTCCCCTACCCTTCGACTACTCCAGAGAGGCACA
CAGATTGGATGATGTAGCTCGAACAGCAGCATCATGGTCTACCACTAATA
ATGGTGGGGCTAAATCGCACGACCTCCGAAACACGCACCTTGCTTTCGGC
CTGGGTTTGACCGTTATCCTCATTCACATGGCGTCGTTGGTGGGGTCCAA
ATCCATCCATGGCGTTGTTGGGGTCCGCTTGCTGCCCGCCGCCAGCCTGG
CCTACGGCTGAAGCGCCGCTAGAGCTGCTACCCCGGGTCGTGAGCACACT
ATTACGGTGGTGGTCCGTAGTTAATAGGACCTATGGTATACATAAAAATC
TATACATTTACCTTTTTTTACTAGCAATATTTGGTCCTATTAACTATGGC
CCCCCGTAATAGGCATAGGGGTGTTGCTGAGTCGTGCCGGTGTTGTGTTT
TGTGCAAGCGCCTCTTGTGGTGTGCGTGGTTTCAGCTTACAGCCGCTGTG
TAGCTGTTGCGGTCAAAAAGCGAAAAATTCGAATTCTGCCGGGTGTCGAC
CAGATTCCATCTACTGTAGTATAACATCAAATGCTGTACCTGGTACGTAC
AAAAAATATCTGGTTGGGTGTGTTGATGTCGTTCTATTTTGCGTGCTTGT
ATTGGTCACTTACACAGTTCGTGAGCTAGCTCATCTAACCCCTTTTAAGC
TCAAGCCTTGAAAGCATGTGCAGATGAGCTATCGCCTATAGCTCGAGCTT
TGAAAACATGTGCAGATGAGCTACCGCCTATAGCTCAAGCCTCGAGCGCA
TGTGCAGATGAGCTATCGCTAGCTCAAGCTTTGAAAACATGTGCAGATGA
GCTTCCACCTATAGGTCAAGCCAGGGGAAACATGTGTAGCTCATGTAGCT
CCTATAGCTCATCTCGGGGGTAGATGAGCTAGCTCACGTATCTCCTATAG
CTCACTCTGGACATATATGTGCAGACGAGCTATCCTCTATAGCTCAAGCT
TTGAAAATATGTGCAGATGAGCTGCCCTCCTATACCTCAAGCGAGGAAAA
CATGTATAGTTCATGTAGCTCACGTAGCTCACCGATGAACTAGCTCCTTA
GAGAGCTAGCTCGAGCTACCGTCAGCTGAGCTGTCCGAGGTGTGTTCTGT
CCATATATATATATATATATATATGTATATACAAGGTTCCCCTCCGGGAA
GTGCCTATTAACAAGGGAGTGGCGCAAGAACGAAACAATACTCGTATAAA
ATACCTACCTGCACACCTGTTAGAACTACTGTACCTGCACCCCACCAATC
AGAAGAACAGACACACATATTTTTGAGGACAGAACTGCTGCACTGCTGCT
GTTTGTGGAAATAGTGTGGGATCATGTAGTTAATATCAAAGGATGATACC
GGTAGGACGAGTACGCTACGGTATAGGCCCGCCAATAAGAAAGTACCCAC
CTAAGAACATATTGCTCACTTTTTGGAGAACGCTAAGAAAATTTGGGTAA
GAAAAACGGCTCGGTGGTGAATTCTACACTAAATACTACCTGGTATATAG
TAGCCTATGCTCAAGGTTGTTTCAAGATGGCGCCCCAATAACAATCTCAG
GCTTGCCCATGCTGCTGTACCCATTCGGTTGACTGTAGTAATCAGGCCGC
TATACTACTATGATTACTGCTGTGTTCTCAGTAGGAAAAAAACCGGCAGT
GTACAGCAGCAACAGCAGGAGGGTCAACAGCAGCCAGTGCTTCATCGTAC
GATAACTGTGCGAACGACGTAGTGTACATGACATTGACATGTTTTATACC
TGGTGGTATGAGAGCTTCCACTGGGGGCAGGAATCGGTTCCCCTACTAAG
TGCCAAGAAAAAAAAAAAAAAAAATGCCTGCATGCAGACCGCAACAAGCC
GAGCAAGTAGTTGTGTGCCTGGTGCGTAGCGGCCAACATGACAATGGCGA
CGAGCAAACAGGTAGGTACCCGTAGGCACATAGTTGCTGACTGCTGGTCT
GGCCGCTGCTGCGAGCATCGCACCACTGCTTCGCTGTTGCTGTCCATCTA
TAGCAAGCAGAACAATAGCACGCCAGCAGCAGTAGAAATCGATTTGTGCC
GTCACCCACCAAGATGTGTCAGGAGACATGTCAATCAAGGCAAAGCGTGA
ACTGTCAAGAGTGTAGGGCCGAGTGTTCTATACTAAAACCTACCTACTGT
AGGACCACGGTGTCAGTCGAGGCATGTCAAGGCAATTTTGCTTTCCGTCA
TGGACTAAAAATTCTGTCTCCTGACATCTTTGTTACACCGCAAGCGCAGA
CAGTCTCTGGTTAACCATCCACCGTACAGCGCGGCTCTACCTACCACACG
TGCATGGCGTTGCCCTCTGTTGATGCTGTAGTTAGCTGGCAGTCAGCACG
CTCTCTGGTCTGCTTGTGTTGATGTCTGTTGCCGGAGTCGCACTGCTGTG
TGCAACAAACAGCCCCCAACATGTTGTACGATCTCACGATCGCGCACAGC
GTCAGAGAGTGAGCGGTGTGTTGTTATTGCGGGATGACTAATCTTGGGTC
AGAAAAAAAAACAGCTAGCCACAGCAATGCAGCACGCATGTAGACCTGCT
ACACGTGCCCGTGGCTGCCCCCTGCGCTGCTGCTGCTGCGGGACAGCAGG
GTTGTAATGTTGTAAGCAGCTGGGGTTAACCACGCTCTCTACCCTGCTGC
TGTATTGAATTGTCTGTTGTTGTCTGTGGTGTGTTCAGACGCAAAAAAAA
AGTGTACCGGTACGTACTACAGCAGTACAGCAGACCAAAAAGATGACGAT
ATTTCAGAGCTACGTACGTACAAAATAAGGCCTCTCGTACTGAAACCAGG
GAAATCGTCCTATCCACTCCCGCCGGGAAAAAACTTTGAGCGCCCGACAC
GCGCTTCAGAGTGCACGGATCGCGCCGAGACCTAGACCAATGTGTCCGGC
CGAGTTTCCCGTGAGTGAGTACTTACTTACTGTTTTGTCGAAAAGTGCCT
CTGCGAATAGTTGTCAAAAGTACGAATATTTGACAAACATACGTACACGT
ACACGTGTTTGTTGTTTCTTTGCAGCCGGATCCCAGGTTTGAAGCAATTG
TGACATTTTTCTTTCTGGATCAAGAACGCCTGGCCCACTTCACCCAGTCA
GTCGACCATCGTGTTTGCGGGGTATACATACACGAGGAAAGAAAAAGAAA
GAGAAAAAAAAATTAAGCTGTTTTTCGTGAGATACGAAAATTTCCTCGAA
AATTCCTGTTTTGCTTGCAAGCTTTGGTTTGATAATTGGATCGCGCTTTC
TATGGTGTGTGCAGGTTCTCAGAGTTGTCTACATGCCATCACGGCTTTGA
AAGCAACGAAATTATACCAGGTACTCGTACGTGTTTGGTGTTTTTCGGCA
GCCGGACCCCAGCTTCCACGGATCGATAACCTTCGTTTTCGACCAAGAGC
CGGACGACGAAAGCGGTGGCGATGGTGCGGAGGCAGAGGCAAGGCAAGCC
GGAGGTGACGGGGAGAGCGCGCCGAAGCCCGAGCTCGAGGTCTCGGTGAC
AATCGAAAAGGTATATATACCTGGTACATGCATGAAGACTTTATTTACCT
GGACCCCCCCGTTTATCCTTCAGGGAGTTGGTCGACCTACGTTACAGCCA
TAACAAAAAAAACGATTTGCGACCTGAGATTCACCCTATATATTTACACA
TATATATATTTTAGGACGTACCGTCGGGCGGGTCGAAAAGAGGCGTGAAT
ATGGGGTCCCGTGTGTCTCTTTGTTTGTTTGTTCGTCTTTTCGGCCTTGC
TCGAAAAATGGTTCCGTGTCACGTACCAGGCAAGTTAGAAAACTCGCATT
CTAGGAAATTATTCCTCACGACAGATGGTCGATTCCCACTTCCATGATCT
ACGATAGAGGTTCATTCACCCTAGTTTTTCTGAGGCTCTTCACTTGACCT
TAAGGAGCTCCATGCCTCACCCGACAACTGACTTCAGCAGAAATCGAATT
GCGTCCCGATGAATAATGCTATGGCCCAAGTATACAATTTAGTCATTGTT
CGAAACAAGATTATTGGCATCATTCGGACGATTTTGGGTTAAGGAGCCCC
GTCGTTCAGAAAAACATTTCAGCGGAAATGCGTTGCCACCTGTCTCGTAG
AACGCGTCAGAGTAGAAATCCATCAGGACATCTATTTACGGGGGGCCATA
GTACGTAGGACCTGCGGTACACACAAAAAACCTACCAGTATATATATATT
TGCCTATTTTTTACCTACAATATTTGGTCCTATTTACTATCGTCCCCCGT
AAATAGCATGTCCGCCTGCATCGCCGTCTATCGTACGAGCTCGCGCAATA
CCCCGCACGATCAATCTACTCCTGTATGCGAGGAGTCATGTATATCCTGG
GTGGGATGTATACCGTACAAATCCCGCGCAACACGCCCTTATAAGCTTCC
ACCCTGACCTGAAATATAAGAACCGTTTGATATCGGTCTCAGGGTTCAAA
TGAGTTTTATATTTTCGGTCAGAGTGGTATAACCCTTCCAGGACTGTCAG
GACTGCAGTCAGTCTCGTTTCGGTTTCAAGGGCAGGTTAGGACCTAGATA
GATAGATGGATAGATAGATAGATAGATAGATAGATCATGATCTGCTCGAT
GCTGTGCGTATCATACGAAGTGTATATTTCGTGGGACCATGGTAAATCGG
ACCTACGGTACACACAAAAACCTACATTGCCTTATTTTTACTATTTAATA
ACAATATTTGGTCCTATTTACTATGGTCCCCCGCAAAAGTTCACGCACGG
ATCATATCTTTTTTTTTGTGACGATATTGCGTCTCCACTACCACGACCTG
TGTTTGTTCATGACGTCACATCGAACAGGCCGAAGAAGGCGTGAATAATC
CGGGGACAGGGATCAATCGTCCCCGTGTTGTAGTGACGCTTGGCGGCATG
CCGGCTGGTTCCGGGGCCGGGCGGGCTATGGGTCGGGTGCGGGTGCCGTA
CAAGCAGTTCCTGCTCGTCTACAGCGGGAAAGCGTCTGCTAGGGACATCG
GCAACCTCGCCATGAAACGCAAGGTT back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig11285:2587..9862+ >mRNA_M-pyrifera_M_contig11285.2673.1 ID=mRNA_M-pyrifera_M_contig11285.2673.1|Name=mRNA_M-pyrifera_M_contig11285.2673.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig11285:2587..9862+ (Macrocystis pyrifera P11B4 male) TCCGAACACGAAAAGGACCATGCTCTCGTGTTGGACCTCATGGAGTACTT CTGCTACGCTGTCAAGTCCGAACACGAAAAGGACCATGCTCTCGTGTTGG ACCTCATGGAGTACTTCTGCTACGCTGTCAAGCCGGACCCCAGCTTCCAC GGATCGATAACCTTCGTTTTCGACCAAGAGCCGGACGACGAAAGCGGTGG CGATGGTGCGGAGGCAGAGGCAAGGCAAGCCGGAGGTGACGGGGAGAGCG CGCCGAAGCCCGAGCTCGAGGTCTCGGTGACAATCGAAAAGGTATATATA CCTGCCGGACCCCAGCTTCCACGGATCGATAACCTTCGTTTTCGACCAAG AGCCGGACGACGAAAGCGGTGGCGATGGTGCGGAGGCAGAGGCAAGGCAA GCCGGAGGTGACGGGGAGAGCGCGCCGAAGCCCGAGCTCGAGGTCTCGGT GACAATCGAAAAGGTATATATACCTGGCGTGAATAATCCGGGGACAGGGA TCAATCGTCCCCGTGTTGTAGTGACGCTTGGCGGCATGCCGGCTGGTTCC GGGGCCGGGCGGGCTATGGGTCGGGTGCGGGTGCCGTACAAGCAGTTCCT GCTCGTCTACAGCGGGAAAGCGTCTGCTAGGGACATCGGCAACCTCGCCA TGAAACGCAAGGTTGCGTGAATAATCCGGGGACAGGGATCAATCGTCCCC GTGTTGTAGTGACGCTTGGCGGCATGCCGGCTGGTTCCGGGGCCGGGCGG GCTATGGGTCGGGTGCGGGTGCCGTACAAGCAGTTCCTGCTCGTCTACAG CGGGAAAGCGTCTGCTAGGGACATCGGCAACCTCGCCATGAAACGCAAGG TT back to top
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