mRNA_M-pyrifera_M_contig112725.2644.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112725.2644.1
Unique NamemRNA_M-pyrifera_M_contig112725.2644.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig112725.2644.1 vs. uniprot
Match: A0A4C1WIY6_EUMVA (Ubiquitin-like-conjugating enzyme ATG3 (Fragment) n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1WIY6_EUMVA)

HSP 1 Score: 92.0 bits (227), Expect = 7.840e-23
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:   40 YVVPVLKESRFPDEGVLTPEEFVRAGDFLVKRFPIWQWSSGEDGAAKPYLPPSKQFLVCR 219
            Y+ PVLKES+F + GVLTPEEFV AGD LV   P WQW++GED   +PYLPP KQFL+ R
Sbjct:   18 YLTPVLKESKFHETGVLTPEEFVAAGDHLVHHCPTWQWATGEDSRIRPYLPPDKQFLITR 77
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BLAST of mRNA_M-pyrifera_M_contig112725.2644.1 vs. uniprot
Match: A0A3Q0J8S0_DIACI (ubiquitin-like-conjugating enzyme ATG3 n=1 Tax=Diaphorina citri TaxID=121845 RepID=A0A3Q0J8S0_DIACI)

HSP 1 Score: 91.7 bits (226), Expect = 4.740e-22
Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 1 
Query:    7 AMSGWLQAAREYVVPVLKESRFPDEGVLTPEEFVRAGDFLVKRFPIWQWSSGEDGAAKPYLPPSKQFLVCR 219
            ++ G      EY+ PVLKES+F + GV+TPEEFV AGD LV   P WQW+SG++  AK YLPP+KQFL+ +
Sbjct:    7 SVKGTALGVAEYLTPVLKESKFRETGVVTPEEFVAAGDHLVHHCPTWQWASGDESKAKSYLPPNKQFLITK 77
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BLAST of mRNA_M-pyrifera_M_contig112725.2644.1 vs. uniprot
Match: A0A3P7LJV8_DIBLA (Uncharacterized protein (Fragment) n=1 Tax=Dibothriocephalus latus TaxID=60516 RepID=A0A3P7LJV8_DIBLA)

HSP 1 Score: 89.7 bits (221), Expect = 5.170e-22
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:   37 EYVVPVLKESRFPDEGVLTPEEFVRAGDFLVKRFPIWQWSSGEDGAAKPYLPPSKQFLVCRG 222
            EY+ PVL++S+F + GV+TPEEFV AGDFLV   P WQW +GE   A+ YLPP+KQ+LV +G
Sbjct:   17 EYITPVLRQSKFRETGVITPEEFVVAGDFLVHHCPTWQWCAGEPARARSYLPPAKQYLVTKG 78
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BLAST of mRNA_M-pyrifera_M_contig112725.2644.1 vs. uniprot
Match: A0A654I374_9CEST (Uncharacterized protein (Fragment) n=2 Tax=Diphyllobothriidae TaxID=28843 RepID=A0A654I374_9CEST)

HSP 1 Score: 92.4 bits (228), Expect = 5.730e-22
Identity = 40/74 (54.05%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:    1 QRAMSGWLQAAREYVVPVLKESRFPDEGVLTPEEFVRAGDFLVKRFPIWQWSSGEDGAAKPYLPPSKQFLVCRG 222
            ++A+S       EY+ PVL++S+F + GV+TPEEFV AGDFLV   P WQWS GE   A+ YLPP+KQ+LV +G
Sbjct:    5 RQAVSRTALGLAEYITPVLRQSKFRETGVITPEEFVVAGDFLVHHCPTWQWSGGEPARARSYLPPNKQYLVTKG 78
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BLAST of mRNA_M-pyrifera_M_contig112725.2644.1 vs. uniprot
Match: A0A444TFI4_ARMVU (Ubiquitin-like-conjugating enzyme ATG3 n=1 Tax=Armadillidium vulgare TaxID=13347 RepID=A0A444TFI4_ARMVU)

HSP 1 Score: 90.1 bits (222), Expect = 6.850e-22
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:   37 EYVVPVLKESRFPDEGVLTPEEFVRAGDFLVKRFPIWQWSSGEDGAAKPYLPPSKQFLVCR 219
            EY+ PVLKES+F + GVLTPEEFV AGD +V   P WQWS+G+    KPYLPP KQFL+ +
Sbjct:   17 EYLTPVLKESKFKETGVLTPEEFVIAGDHVVHHCPTWQWSAGDPSKTKPYLPPDKQFLITK 77
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BLAST of mRNA_M-pyrifera_M_contig112725.2644.1 vs. uniprot
Match: UPI001B889AE9 (ubiquitin-like-conjugating enzyme ATG3 isoform X1 n=2 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B889AE9)

HSP 1 Score: 94.7 bits (234), Expect = 1.070e-21
Identity = 41/71 (57.75%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:    7 AMSGWLQAAREYVVPVLKESRFPDEGVLTPEEFVRAGDFLVKRFPIWQWSSGEDGAAKPYLPPSKQFLVCR 219
            A+ G      EY+ PVLKES+F + GV+TPEEFV AGD +V   P WQW  GED   KPYLPP KQFL+ R
Sbjct:    7 AVKGTALGVAEYLTPVLKESKFRETGVITPEEFVAAGDHIVHHCPTWQWMKGEDSKIKPYLPPDKQFLITR 77
[Close]
BLAST of mRNA_M-pyrifera_M_contig112725.2644.1 vs. uniprot
Match: A0A0T6B7B6_9SCAR (Uncharacterized protein n=1 Tax=Oryctes borbonicus TaxID=1629725 RepID=A0A0T6B7B6_9SCAR)

HSP 1 Score: 94.0 bits (232), Expect = 1.220e-21
Identity = 41/71 (57.75%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    7 AMSGWLQAAREYVVPVLKESRFPDEGVLTPEEFVRAGDFLVKRFPIWQWSSGEDGAAKPYLPPSKQFLVCR 219
            +M G      EY+ PVLKES+F + GVLTPEEFV AGD LV   P WQW++G+D  AKPYLP  KQFL+ +
Sbjct:    7 SMKGTALGVAEYLTPVLKESKFRETGVLTPEEFVAAGDHLVHHCPTWQWATGDDAKAKPYLPRDKQFLITK 77
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BLAST of mRNA_M-pyrifera_M_contig112725.2644.1 vs. uniprot
Match: K3X371_GLOUD (Autophagy-related protein 3 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X371_GLOUD)

HSP 1 Score: 94.7 bits (234), Expect = 1.480e-21
Identity = 41/70 (58.57%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:   10 MSGWLQAAREYVVPVLKESRFPDEGVLTPEEFVRAGDFLVKRFPIWQWSSGEDGAAKPYLPPSKQFLVCR 219
            M G     REY+ PVLKES F D+G+LTPEEFV+AGD LV + P W+W SGE    +PYLP  KQ+LV R
Sbjct:    1 MQGLFHGVREYLTPVLKESSFEDKGLLTPEEFVKAGDLLVYKCPTWRWESGEPSLRRPYLPADKQYLVTR 70
[Close]
BLAST of mRNA_M-pyrifera_M_contig112725.2644.1 vs. uniprot
Match: A0A1B6CLB3_9HEMI (Uncharacterized protein n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6CLB3_9HEMI)

HSP 1 Score: 90.1 bits (222), Expect = 1.630e-21
Identity = 40/71 (56.34%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:    7 AMSGWLQAAREYVVPVLKESRFPDEGVLTPEEFVRAGDFLVKRFPIWQWSSGEDGAAKPYLPPSKQFLVCR 219
            ++ G      EY+ PVLKES+F + GV+TPEEFV AGD LV   P WQWSSG++   K YLP SKQFL+ R
Sbjct:    7 SVKGTALGVAEYLTPVLKESKFRETGVITPEEFVAAGDHLVHHCPTWQWSSGDENRTKSYLPQSKQFLLTR 77
[Close]
BLAST of mRNA_M-pyrifera_M_contig112725.2644.1 vs. uniprot
Match: V5I812_ANOGL (Ubiquitin-like-conjugating enzyme ATG3 n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=V5I812_ANOGL)

HSP 1 Score: 94.0 bits (232), Expect = 2.060e-21
Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 1 
Query:    7 AMSGWLQAAREYVVPVLKESRFPDEGVLTPEEFVRAGDFLVKRFPIWQWSSGEDGAAKPYLPPSKQFLVCR 219
            ++ G   A  EY+ PVLKES+F + GVLTPEEFV AGD LV   P WQW++G++  AKPYLP  KQFL+ R
Sbjct:    7 SVKGTALAVGEYLTPVLKESKFKETGVLTPEEFVAAGDHLVHHCPTWQWAAGDESKAKPYLPKDKQFLITR 77
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112725.2644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4C1WIY6_EUMVA7.840e-2365.00Ubiquitin-like-conjugating enzyme ATG3 (Fragment) ... [more]
A0A3Q0J8S0_DIACI4.740e-2254.93ubiquitin-like-conjugating enzyme ATG3 n=1 Tax=Dia... [more]
A0A3P7LJV8_DIBLA5.170e-2259.68Uncharacterized protein (Fragment) n=1 Tax=Dibothr... [more]
A0A654I374_9CEST5.730e-2254.05Uncharacterized protein (Fragment) n=2 Tax=Diphyll... [more]
A0A444TFI4_ARMVU6.850e-2262.30Ubiquitin-like-conjugating enzyme ATG3 n=1 Tax=Arm... [more]
UPI001B889AE91.070e-2157.75ubiquitin-like-conjugating enzyme ATG3 isoform X1 ... [more]
A0A0T6B7B6_9SCAR1.220e-2157.75Uncharacterized protein n=1 Tax=Oryctes borbonicus... [more]
K3X371_GLOUD1.480e-2158.57Autophagy-related protein 3 n=1 Tax=Globisporangiu... [more]
A0A1B6CLB3_9HEMI1.630e-2156.34Uncharacterized protein n=1 Tax=Clastoptera arizon... [more]
V5I812_ANOGL2.060e-2157.75Ubiquitin-like-conjugating enzyme ATG3 n=1 Tax=Ano... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112725contigM-pyrifera_M_contig112725:300..582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue1.8e-17
Seed eggNOG ortholog65071.PYU1_T011670
Preferred nameATG3
KEGG koko:K08343
KEGG Pathwayko04136,ko04138,ko04140,ko05167,map04136,map04138,map04140,map05167
Hectar predicted targeting categoryother localisation
GOsGO:0000045,GO:0000151,GO:0000153,GO:0000272,GO:0000422,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005776,GO:0005829,GO:0005975,GO:0005976,GO:0005977,GO:0005980,GO:0006073,GO:0006091,GO:0006112,GO:0006464,GO:0006497,GO:0006501,GO:0006605,GO:0006612,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0006915,GO:0006950,GO:0006996,GO:0007005,GO:0007033,GO:0007154,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009251,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0012501,GO:0015031,GO:0015833,GO:0015980,GO:0016043,GO:0016052,GO:0016236,GO:0016237,GO:0016567,GO:0016740,GO:0018410,GO:0019538,GO:0019776,GO:0019777,GO:0019787,GO:0019899,GO:0022411,GO:0022607,GO:0030100,GO:0031344,GO:0031667,GO:0031668,GO:0031669,GO:0032258,GO:0032446,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0033554,GO:0034613,GO:0034645,GO:0034727,GO:0036211,GO:0042157,GO:0042158,GO:0042594,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043653,GO:0043687,GO:0044042,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044275,GO:0044424,GO:0044444,GO:0044464,GO:0044804,GO:0044805,GO:0045184,GO:0045806,GO:0046907,GO:0048519,GO:0048523,GO:0050764,GO:0050765,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055114,GO:0060491,GO:0060627,GO:0061723,GO:0061726,GO:0061912,GO:0061919,GO:0065007,GO:0070647,GO:0070727,GO:0070925,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072657,GO:0072665,GO:0090150,GO:0120032,GO:0120035,GO:0140096,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902017,GO:1902115,GO:1902494,GO:1903008,GO:1905037,GO:1990234
EggNOG free text desc.Source PGD
EggNOG OGs1MDEV@121069,KOG2981@1,KOG2981@2759
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04121,ko04131
Exons2
Model size222
Cds size213
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112725.2644.1prot_M-pyrifera_M_contig112725.2644.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112725 309..582 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.7621696-UTR-M-pyrifera_M_contig112725:299..3081622815640.7621696-UTR-M-pyrifera_M_contig112725:299..308Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112725 300..308 +
1692277500.7094514-UTR-M-pyrifera_M_contig112725:299..3081692277500.7094514-UTR-M-pyrifera_M_contig112725:299..308Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112725 300..308 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.7743568-CDS-M-pyrifera_M_contig112725:308..4511622815640.7743568-CDS-M-pyrifera_M_contig112725:308..451Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112725 309..451 +
1692277500.724469-CDS-M-pyrifera_M_contig112725:308..4511692277500.724469-CDS-M-pyrifera_M_contig112725:308..451Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112725 309..451 +
1622815640.7864227-CDS-M-pyrifera_M_contig112725:512..5821622815640.7864227-CDS-M-pyrifera_M_contig112725:512..582Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112725 513..582 +
1692277500.7319605-CDS-M-pyrifera_M_contig112725:512..5821692277500.7319605-CDS-M-pyrifera_M_contig112725:512..582Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112725 513..582 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112725.2644.1

>prot_M-pyrifera_M_contig112725.2644.1 ID=prot_M-pyrifera_M_contig112725.2644.1|Name=mRNA_M-pyrifera_M_contig112725.2644.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=71bp
MSGWLQAAREYVVPVLKESRFPDEGVLTPEEFVRAGDFLVKRFPIWQWSS
GEDGAAKPYLPPSKQFLVCRG
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mRNA from alignment at M-pyrifera_M_contig112725:300..582+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112725.2644.1 ID=mRNA_M-pyrifera_M_contig112725.2644.1|Name=mRNA_M-pyrifera_M_contig112725.2644.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=283bp|location=Sequence derived from alignment at M-pyrifera_M_contig112725:300..582+ (Macrocystis pyrifera P11B4 male)
CAACGCGCCATGAGTGGCTGGCTGCAAGCTGCAAGAGAGTATGTCGTTCC
TGTGCTGAAGGAGTCGAGGTTCCCCGACGAGGGCGTCCTCACGCCAGAGG
AGTTTGTCAGAGCGGGCGATTTCCTCGTTAAGCGGTTTCCCATCTGGCAG
TGGTGAGCTTGTGTTTACGGCTGTAGCTCGGCGAGACTGTGGCTTACGCA
TACACACATACAGGTCCAGCGGCGAAGATGGTGCTGCCAAGCCGTACCTG
CCCCCCAGCAAGCAGTTCCTTGTTTGTCGAGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112725:300..582+

>mRNA_M-pyrifera_M_contig112725.2644.1 ID=mRNA_M-pyrifera_M_contig112725.2644.1|Name=mRNA_M-pyrifera_M_contig112725.2644.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig112725:300..582+ (Macrocystis pyrifera P11B4 male)
ATGAGTGGCTGGCTGCAAGCTGCAAGAGAGTATGTCGTTCCTGTGCTGAA
GGAGTCGAGGTTCCCCGACGAGGGCGTCCTCACGCCAGAGGAGTTTGTCA
GAGCGGGCGATTTCCTCGTTAAGCGGTTTCCCATCTGGCAGTGATGAGTG
GCTGGCTGCAAGCTGCAAGAGAGTATGTCGTTCCTGTGCTGAAGGAGTCG
AGGTTCCCCGACGAGGGCGTCCTCACGCCAGAGGAGTTTGTCAGAGCGGG
CGATTTCCTCGTTAAGCGGTTTCCCATCTGGCAGTGGTCCAGCGGCGAAG
ATGGTGCTGCCAAGCCGTACCTGCCCCCCAGCAAGCAGTTCCTTGTTTGT
CGAGGCGTCCAGCGGCGAAGATGGTGCTGCCAAGCCGTACCTGCCCCCCA
GCAAGCAGTTCCTTGTTTGTCGAGGC
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