mRNA_M-pyrifera_M_contig112562.2619.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig112562.2619.1
Unique Name	mRNA_M-pyrifera_M_contig112562.2619.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig112562.2619.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig112562.2619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig112562	contig	M-pyrifera_M_contig112562:271..576 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	62.4
Seed ortholog evalue	1.4e-07
Seed eggNOG ortholog	5786.XP_003291347.1
Preferred name	EXOC3L1
KEGG ko	ko:K06110,ko:K14288,ko:K19987,ko:K19988,ko:K19989
KEGG Pathway	ko03013,map03013
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000145,GO:0000149,GO:0000920,GO:0001505,GO:0001654,GO:0001667,GO:0001745,GO:0001751,GO:0001754,GO:0002064,GO:0002065,GO:0002066,GO:0002790,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005628,GO:0005737,GO:0005829,GO:0005911,GO:0005912,GO:0005913,GO:0005915,GO:0005933,GO:0005934,GO:0005935,GO:0005937,GO:0005938,GO:0006810,GO:0006836,GO:0006886,GO:0006887,GO:0006892,GO:0006893,GO:0006903,GO:0006904,GO:0006928,GO:0006996,GO:0007009,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007399,GO:0007423,GO:0008104,GO:0008150,GO:0009653,GO:0009887,GO:0009888,GO:0009914,GO:0009987,GO:0010256,GO:0010631,GO:0010639,GO:0010817,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016028,GO:0016043,GO:0016079,GO:0016080,GO:0016081,GO:0016192,GO:0016197,GO:0016477,GO:0017156,GO:0019953,GO:0022008,GO:0022406,GO:0022412,GO:0022414,GO:0023052,GO:0023061,GO:0030054,GO:0030072,GO:0030141,GO:0030154,GO:0030182,GO:0030427,GO:0030659,GO:0030667,GO:0030707,GO:0030855,GO:0031090,GO:0031333,GO:0031338,GO:0031339,GO:0031410,GO:0031503,GO:0031982,GO:0032153,GO:0032456,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032940,GO:0032991,GO:0033036,GO:0033043,GO:0034613,GO:0034629,GO:0035542,GO:0035544,GO:0035838,GO:0040011,GO:0042051,GO:0042052,GO:0042461,GO:0042462,GO:0042763,GO:0042764,GO:0042802,GO:0042803,GO:0042886,GO:0042995,GO:0043001,GO:0043226,GO:0043227,GO:0043229,GO:0043254,GO:0043296,GO:0043332,GO:0044085,GO:0044087,GO:0044091,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044448,GO:0044463,GO:0044464,GO:0044703,GO:0045055,GO:0045184,GO:0045313,GO:0046530,GO:0046879,GO:0046903,GO:0046907,GO:0046983,GO:0048193,GO:0048278,GO:0048468,GO:0048477,GO:0048489,GO:0048513,GO:0048519,GO:0048523,GO:0048592,GO:0048609,GO:0048666,GO:0048699,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0051049,GO:0051051,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051285,GO:0051286,GO:0051301,GO:0051601,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051674,GO:0051704,GO:0060429,GO:0060627,GO:0061024,GO:0061951,GO:0065007,GO:0065008,GO:0070161,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0072697,GO:0090130,GO:0090132,GO:0090150,GO:0090522,GO:0090596,GO:0090726,GO:0097479,GO:0097480,GO:0097574,GO:0097575,GO:0097708,GO:0098588,GO:0098805,GO:0098876,GO:0098916,GO:0099003,GO:0099022,GO:0099023,GO:0099503,GO:0099504,GO:0099536,GO:0099537,GO:0099568,GO:0099643,GO:0099738,GO:0120025,GO:0120038,GO:0140029,GO:0140056,GO:1902716,GO:1990778
EggNOG free text desc.	Exocyst complex component Sec6
EggNOG OGs	3X8M1@554915,COG5173@1,KOG2286@2759
COG Functional cat.	U
Best tax level	Amoebozoa
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03016,ko04131
Exons	1
Model size	306
Cds size	294
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815639.5348432-CDS-M-pyrifera_M_contig112562:270..564	1622815639.5348432-CDS-M-pyrifera_M_contig112562:270..564	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig112562 271..564 -
1692277500.1757703-CDS-M-pyrifera_M_contig112562:270..564	1692277500.1757703-CDS-M-pyrifera_M_contig112562:270..564	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig112562 271..564 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815639.5461822-UTR-M-pyrifera_M_contig112562:564..576	1622815639.5461822-UTR-M-pyrifera_M_contig112562:564..576	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig112562 565..576 -
1692277500.1949885-UTR-M-pyrifera_M_contig112562:564..576	1692277500.1949885-UTR-M-pyrifera_M_contig112562:564..576	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig112562 565..576 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig112562.2619.1	prot_M-pyrifera_M_contig112562.2619.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig112562 271..564 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig112562:271..576-
coding sequence from alignment at M-pyrifera_M_contig112562:271..576-

protein sequence of mRNA_M-pyrifera_M_contig112562.2619.1

>prot_M-pyrifera_M_contig112562.2619.1 ID=prot_M-pyrifera_M_contig112562.2619.1|Name=mRNA_M-pyrifera_M_contig112562.2619.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
MLSPQFADLISFAVARDGFEHLSCLAERVLAQAIFRDLEEHMERFGSKEW
LKDPESLMDAICDTFFDYYLNHVEGFVLDSTMATLHAHCLSLVVTSFL

mRNA from alignment at M-pyrifera_M_contig112562:271..576-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig112562.2619.1 ID=mRNA_M-pyrifera_M_contig112562.2619.1|Name=mRNA_M-pyrifera_M_contig112562.2619.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig112562:271..576- (Macrocystis pyrifera P11B4 male)
CGAGTGTTCGAGATGCTATCTCCTCAATTTGCAGACCTGATCAGCTTTGC
GGTTGCCAGGGATGGCTTCGAGCACCTCTCCTGCCTAGCAGAGCGAGTGC
TGGCGCAGGCAATCTTCCGCGACCTGGAGGAGCACATGGAGAGGTTTGGT
AGCAAGGAATGGCTCAAGGACCCAGAGTCCCTCATGGATGCCATCTGCGA
CACCTTCTTCGACTACTACCTCAACCATGTGGAGGGCTTCGTGCTGGACA
GCACCATGGCCACGCTGCACGCCCACTGTCTCTCTCTCGTCGTCACCTCT
TTCCTC

Coding sequence (CDS) from alignment at M-pyrifera_M_contig112562:271..576-

>mRNA_M-pyrifera_M_contig112562.2619.1 ID=mRNA_M-pyrifera_M_contig112562.2619.1|Name=mRNA_M-pyrifera_M_contig112562.2619.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig112562:271..576- (Macrocystis pyrifera P11B4 male)
ATGCTATCTCCTCAATTTGCAGACCTGATCAGCTTTGCGGTTGCCAGGGA
TGGCTTCGAGCACCTCTCCTGCCTAGCAGAGCGAGTGCTGGCGCAGGCAA
TCTTCCGCGACCTGGAGGAGCACATGGAGAGGTTTGGTAGCAAGGAATGG
CTCAAGGACCCAGAGTCCCTCATGGATGCCATCTGCGACACCTTCTTCGA
CTACTACCTCAACCATGTGGAGGGCTTCGTGCTGGACAGCACCATGGCCA
CGCTGCACGCCCACTGTCTCTCTCTCGTCGTCACCTCTTTCCTCATGCTA
TCTCCTCAATTTGCAGACCTGATCAGCTTTGCGGTTGCCAGGGATGGCTT
CGAGCACCTCTCCTGCCTAGCAGAGCGAGTGCTGGCGCAGGCAATCTTCC
GCGACCTGGAGGAGCACATGGAGAGGTTTGGTAGCAAGGAATGGCTCAAG
GACCCAGAGTCCCTCATGGATGCCATCTGCGACACCTTCTTCGACTACTA
CCTCAACCATGTGGAGGGCTTCGTGCTGGACAGCACCATGGCCACGCTGC
ACGCCCACTGTCTCTCTCTCGTCGTCACCTCTTTCCTC