mRNA_M-pyrifera_M_contig11244.2602.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig11244.2602.1 vs. uniprot
Match: D8LTD4_ECTSI (Glutamyl-tRNA amidotransferase, subunit A, c-terminal region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTD4_ECTSI) HSP 1 Score: 159 bits (401), Expect = 5.410e-45 Identity = 79/99 (79.80%), Postives = 86/99 (86.87%), Query Frame = 1
Query: 1 PTAPTTAYRLGDFAEKGVDAYADDVFTAPASLTGLPALSVPCGQDSAGLPIGVQLIGKTLSEGLLLRAGQAYETATEWHRRFAPGVSASSAAEQVAAGA 297
PTAPTTAYRLG++AEKGV YADDVFT PASL GLP LSVPCGQD AGLPIGVQL+G++LSE LLLR GQAYE+AT WHR+FAPGVSASS A V AGA
Sbjct: 144 PTAPTTAYRLGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMGQSLSEDLLLRVGQAYESATPWHRQFAPGVSASSPAAAVPAGA 242
BLAST of mRNA_M-pyrifera_M_contig11244.2602.1 vs. uniprot
Match: A0A6H5KXC5_9PHAE (Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXC5_9PHAE) HSP 1 Score: 159 bits (403), Expect = 2.010e-42 Identity = 80/99 (80.81%), Postives = 85/99 (85.86%), Query Frame = 1
Query: 1 PTAPTTAYRLGDFAEKGVDAYADDVFTAPASLTGLPALSVPCGQDSAGLPIGVQLIGKTLSEGLLLRAGQAYETATEWHRRFAPGVSASSAAEQVAAGA 297
PTAPTTAYRLG++AEKGV YADDVFT PASL GLP LSVPCGQD AGLPIGVQL+GK LSE LLLR GQAYE+AT WHR+FAPGVSASS A V AGA
Sbjct: 463 PTAPTTAYRLGEYAEKGVGVYADDVFTTPASLAGLPGLSVPCGQDRAGLPIGVQLMGKPLSEDLLLRVGQAYESATPWHRQFAPGVSASSPAAAVPAGA 561
BLAST of mRNA_M-pyrifera_M_contig11244.2602.1 vs. uniprot
Match: A0A836CQP8_9STRA (Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQP8_9STRA) HSP 1 Score: 123 bits (308), Expect = 3.650e-29 Identity = 59/86 (68.60%), Postives = 67/86 (77.91%), Query Frame = 1
Query: 1 PTAPTTAYRLGDFAEKGVDAYADDVFTAPASLTGLPALSVPCGQDSAGLPIGVQLIGKTLSEGLLLRAGQAYETATEWHRRFAPGV 258
PTAPTTAYRLGDF KGV +YADD+FT PASL GLPALS+PCG D+AGLPIGVQLIG E L+RA AYE +T+W R PG+
Sbjct: 427 PTAPTTAYRLGDFEAKGVASYADDLFTVPASLAGLPALSLPCGVDAAGLPIGVQLIGGAWQEEALVRAAYAYERSTDWRARLPPGL 512
BLAST of mRNA_M-pyrifera_M_contig11244.2602.1 vs. uniprot
Match: A0A534U3P2_9DELT (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534U3P2_9DELT) HSP 1 Score: 99.4 bits (246), Expect = 3.250e-23 Identity = 46/84 (54.76%), Postives = 58/84 (69.05%), Query Frame = 1
Query: 1 PTAPTTAYRLGDFAEKGVDAYADDVFTAPASLTGLPALSVPCGQDSAGLPIGVQLIGKTLSEGLLLRAGQAYETATEWHRRFAP 252
P APTTA+RLG+ + Y D+FT +L GLPAL++PCG D+AGLPIG+Q+IG+ E +LR G AYE AT WH R AP
Sbjct: 39 PVAPTTAFRLGEKTADPLTMYLSDIFTISVNLAGLPALALPCGFDAAGLPIGLQVIGRPFEEAAVLRIGHAYEQATTWHTRGAP 122
BLAST of mRNA_M-pyrifera_M_contig11244.2602.1 vs. uniprot
Match: A0A521S580_9BACT (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA (Fragment) n=1 Tax=bacterium TaxID=1869227 RepID=A0A521S580_9BACT) HSP 1 Score: 98.2 bits (243), Expect = 6.710e-22 Identity = 44/81 (54.32%), Postives = 57/81 (70.37%), Query Frame = 1
Query: 1 PTAPTTAYRLGDFAEKGVDAYADDVFTAPASLTGLPALSVPCGQDSAGLPIGVQLIGKTLSEGLLLRAGQAYETATEWHRR 243
PTAPTTA+++G+ + + Y D+FT +L GLP LS+PCG DS GLPIG+Q+IGK E +LR AYE ATEWH+R
Sbjct: 113 PTAPTTAFKIGEKTQDPLQMYLSDIFTISVNLAGLPGLSLPCGFDSEGLPIGMQIIGKHFDEATILRIAFAYEQATEWHKR 193
BLAST of mRNA_M-pyrifera_M_contig11244.2602.1 vs. uniprot
Match: A0A0G4GTE2_VITBC (Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GTE2_VITBC) HSP 1 Score: 103 bits (256), Expect = 6.910e-22 Identity = 52/98 (53.06%), Postives = 62/98 (63.27%), Query Frame = 1
Query: 1 PTAPTTAYRLGDFAEKGVDAYADDVFTAPASLTGLPALSVPCGQDSAGLPIGVQLIGKTLSEGLLLRAGQAYETATEWHRRFAPGVSASSAAEQVAAG 294
PTAPTTAYRLG F E V+ Y DD+ T PASL+GLPALSVPCG + LPIG+Q++GK L E LL+ G Y+ AT W R + A Q G
Sbjct: 464 PTAPTTAYRLGQFKENKVETYIDDLLTVPASLSGLPALSVPCGISAEDLPIGLQIVGKPLDELRLLQIGAGYDEATGWTSRLQKKLQAIKGERQAGGG 561
BLAST of mRNA_M-pyrifera_M_contig11244.2602.1 vs. uniprot
Match: A0A1F4B1D9_9PROT (Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_66_14 TaxID=1797490 RepID=A0A1F4B1D9_9PROT) HSP 1 Score: 102 bits (253), Expect = 1.280e-21 Identity = 48/84 (57.14%), Postives = 58/84 (69.05%), Query Frame = 1
Query: 1 PTAPTTAYRLGDFAEKGVDAYADDVFTAPASLTGLPALSVPCGQDSAGLPIGVQLIGKTLSEGLLLRAGQAYETATEWHRRFAP 252
P APTTA+ LG+ + V Y +D+FT PASL GLPALS+PCG D AGLP+GVQLIG +E LL A Y+ T+WHRR P
Sbjct: 399 PIAPTTAFALGENVDDPVRMYLNDIFTIPASLAGLPALSIPCGFDGAGLPVGVQLIGPHFTESRLLGAAHRYQQETDWHRRVPP 482
BLAST of mRNA_M-pyrifera_M_contig11244.2602.1 vs. uniprot
Match: A0A7X9J2Q1_9BACT (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7X9J2Q1_9BACT) HSP 1 Score: 95.9 bits (237), Expect = 1.340e-21 Identity = 45/84 (53.57%), Postives = 59/84 (70.24%), Query Frame = 1
Query: 1 PTAPTTAYRLGDFAEKGVDAYADDVFTAPASLTGLPALSVPCGQDSAGLPIGVQLIGKTLSEGLLLRAGQAYETATEWHRRFAP 252
PTAP TA+R+G+ + Y +DV T P +L GLP LSVPCG + G+P+G+QLIG+ E +LL+AG A+E ATEW RR AP
Sbjct: 57 PTAPATAFRIGEKVDDQFQMYLEDVCTIPVNLAGLPGLSVPCG-SAEGMPVGMQLIGRHFEEDVLLKAGHAFEQATEWGRRLAP 139
BLAST of mRNA_M-pyrifera_M_contig11244.2602.1 vs. uniprot
Match: A0A3A0FV31_9PROT (Glutamyl-tRNA(Gln) amidotransferase subunit A (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A3A0FV31_9PROT) HSP 1 Score: 99.4 bits (246), Expect = 2.950e-21 Identity = 44/83 (53.01%), Postives = 60/83 (72.29%), Query Frame = 1
Query: 1 PTAPTTAYRLGDFAEKGVDAYADDVFTAPASLTGLPALSVPCGQDSAGLPIGVQLIGKTLSEGLLLRAGQAYETATEWHRRFA 249
P APTTA+++G+ + + Y D+FT P +L GLP +S+PCG DSAGLPIG+QLI K +E + RA AY+ ATEWH++FA
Sbjct: 248 PVAPTTAFKIGEKSSDPLAMYLSDIFTIPVNLAGLPGMSLPCGFDSAGLPIGLQLIAKPWNEEAIFRAAAAYQGATEWHKKFA 330
BLAST of mRNA_M-pyrifera_M_contig11244.2602.1 vs. uniprot
Match: A0A534U1E1_9DELT (Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534U1E1_9DELT) HSP 1 Score: 100 bits (250), Expect = 3.030e-21 Identity = 47/90 (52.22%), Postives = 60/90 (66.67%), Query Frame = 1
Query: 1 PTAPTTAYRLGDFAEKGVDAYADDVFTAPASLTGLPALSVPCGQDSAGLPIGVQLIGKTLSEGLLLRAGQAYETATEWHRRFAPGVSASS 270
PTAPTTA+RLG+ + Y D+FT +L GLP + VPCG D AGLPIG+Q++G E ++LR +AYE ATEWH R P V A+S
Sbjct: 380 PTAPTTAFRLGEKLADPLQMYLSDIFTISVNLAGLPGIVVPCGVDDAGLPIGLQIVGPPFGEEVVLRTARAYEAATEWHTRRPPRVGAAS 469 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11244.2602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig11244.2602.1 >prot_M-pyrifera_M_contig11244.2602.1 ID=prot_M-pyrifera_M_contig11244.2602.1|Name=mRNA_M-pyrifera_M_contig11244.2602.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp PTAPTTAYRLGDFAEKGVDAYADDVFTAPASLTGLPALSVPCGQDSAGLPback to top mRNA from alignment at M-pyrifera_M_contig11244:1054..9207+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig11244.2602.1 ID=mRNA_M-pyrifera_M_contig11244.2602.1|Name=mRNA_M-pyrifera_M_contig11244.2602.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=8154bp|location=Sequence derived from alignment at M-pyrifera_M_contig11244:1054..9207+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig11244:1054..9207+ >mRNA_M-pyrifera_M_contig11244.2602.1 ID=mRNA_M-pyrifera_M_contig11244.2602.1|Name=mRNA_M-pyrifera_M_contig11244.2602.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig11244:1054..9207+ (Macrocystis pyrifera P11B4 male)back to top |