mRNA_M-pyrifera_M_contig112228.2562.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112228.2562.1
Unique NamemRNA_M-pyrifera_M_contig112228.2562.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig112228.2562.1 vs. uniprot
Match: A0A7C7RGC1_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Desulfarculaceae bacterium TaxID=2528248 RepID=A0A7C7RGC1_9DELT)

HSP 1 Score: 64.7 bits (156), Expect = 5.770e-9
Identity = 61/201 (30.35%), Postives = 97/201 (48.26%), Query Frame = 1 
Query:   19 SSVVYHFSKNTGGDSNWGLQNNI---IGGTGTAFGQSAEIYGLEFIIGSVG----GTNANGLAFIF--ELDGSTISSSNDAEIIHPNDIETNSGYGQAVSISEVGFAIGAPKLDGEQYLDQGATYI--------ND-----EVKLIDEIQDPNRKNFGLAVDMDGDIVMIGAENR---------LFFYEKNKGETDNWGLL 528
            +  V+ F++N GGD+NWG  + I    G +G  FG +  I G   +IG+ G    G+N+ G  FIF    DGS     +  + I  +D   + G+G AV+IS     +G P  D    +D GA +I        N+     ++ + + I   + +NFGLAV +DGD  +IGA             + + +N+G  + WG +
Sbjct:   67 AGAVFIFTRNQGGDNNWGELSKIGASDGASGDGFGWAVAIAGDYIVIGAPGDDDNGSNS-GSVFIFANNPDGSW----SQVKKIVADDGNIDDGFGSAVAISNDRIIVGMPG-DDTISMDAGAAFIFTRNQGGTNNWGQAAKISVDNSIHIGSPENFGLAVAIDGDNAIIGAPGTDNGGIDTGLAYLFNRNQGGDNAWGKI 261
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BLAST of mRNA_M-pyrifera_M_contig112228.2562.1 vs. uniprot
Match: A0A7V4YY11_9BACT (HYR domain-containing protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7V4YY11_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 2.830e-8
Identity = 51/173 (29.48%), Postives = 85/173 (49.13%), Query Frame = 1 
Query:   73 LQNNIIGGTGTAFGQSAEIYGLEFIIGS--VGGTNAN-GLAFIFELDGSTISSSNDAEIIHPNDIETNSGYGQAVSISEVGFAIGAPKLDGEQYLDQGATYI------NDEVKLIDEIQDPNR---KNFGLAVDMDGDIVMIGAE---------NRLFFYEKNKGETDNWGLL 528
            L NN  G TG  +G S  + G   ++G+    G  AN GLA++ + + S   +     ++  +D+E +  +G +VS+      +GAP +D +   + GA YI      N+   L+ +I+  +     NFG AV + GD V++GA             + + KN+G TDNWG +
Sbjct:  715 LVNN--GQTGDFYGASVAVQGSYAVVGAKNADGNGANSGLAYVLQNNDSDPDNWEQIAVLQASDVEADDLFGSSVSVHSNLIIVGAP-MDDDLGSNSGAAYIFARNTSNNTWNLVKKIKANDGIAGDNFGAAVSVKGDKVLVGASMNDEKGLNAGAAYLFAKNQGGTDNWGQI 884
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BLAST of mRNA_M-pyrifera_M_contig112228.2562.1 vs. uniprot
Match: A0A1F5A9Q5_9BACT (Uncharacterized protein n=2 Tax=unclassified Aminicenantes TaxID=910038 RepID=A0A1F5A9Q5_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 5.820e-8
Identity = 59/210 (28.10%), Postives = 95/210 (45.24%), Query Frame = 1 
Query:    1 IVGNP-------NSSVVYHFSKNTGGDSNWGLQNNIIG---GTGTAFGQSAEIYGLEFIIGSVGGT---NANGLAFIFELDGSTISSSNDAEIIHPNDIETNSGYGQAVSISEVGFAIGAPKLDGEQYLDQGATYI-----------NDEVKLIDEIQDPNRKN-FGLAVDMDGDIVMIGAE-------NR--LFFYEKNKGETDNWGLL 528
            +VG+P       N    Y F ++ GG   WG    ++    G G  FG S +I G   ++G+ G     ++ G A++F  D     +    + +  +D E N G+G +V+I      +GA   DG    D+GA Y+            + VKL     DP+  + FG AVD+ GD+++IG+        NR   + + ++ G  D WG L
Sbjct:   63 LVGSPGVDGSGSNRGAAYLFLQSQGGLDGWGEVKQLVAADRGDGDLFGCSVDISGDLAVVGAAGEDGIGSSRGAAYLFSRDHGGADNWGQVKKLVASDAENNDGFGFSVAIDGDTAIVGADGEDGAG-ADRGAVYVFARDQGGPDNWGEVVKLT--AGDPDDADQFGYAVDIAGDVIVIGSRGEDGAGSNRGAAYLFSRDLGGADAWGQL 269
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BLAST of mRNA_M-pyrifera_M_contig112228.2562.1 vs. uniprot
Match: UPI0012FC30ED (FG-GAP repeat protein n=1 Tax=Spirosoma panaciterrae TaxID=496058 RepID=UPI0012FC30ED)

HSP 1 Score: 55.5 bits (132), Expect = 9.250e-6
Identity = 50/174 (28.74%), Postives = 78/174 (44.83%), Query Frame = 1 
Query:   16 NSSVVYHFSKNTGGDSNWGLQNNIIG---GTGTAFGQSAEIYGLEFIIGSV----GGTNAN-----GLAFIFELDGSTISSSNDAEIIHPNDIETNSGYGQAVSISEVGFAIGA-PKLDGEQYLDQGATYI-------ND---EVKLIDEIQDPNRKNFGLAVDMDGDIVMIGA 468
            N+   Y FS+N GG  NWG    ++    G    F QS  I G   ++G++      T  N     G A++F  +     +    + +  +D E+N  +G +V+IS     +GA  + DG Q    GA Y+       ND   +VK +          FG AVD+ GD +++GA
Sbjct:  752 NAGSAYVFSQNQGGTDNWGQVKKLVAADRGATDYFAQSVAINGSTIVVGAIQESEDATGNNTLAYAGSAYVFSQNQGGADNWGQVKKLVASDRESNDYFGSSVTISGSTIVVGALGESDGNQLGAAGAAYVFNQNQGGNDNWGQVKKLVAADRGANDQFGRAVDISGDQIIVGA 925
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112228.2562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7C7RGC1_9DELT5.770e-930.35Uncharacterized protein (Fragment) n=1 Tax=Desulfa... [more]
A0A7V4YY11_9BACT2.830e-829.48HYR domain-containing protein n=1 Tax=Bacteroidete... [more]
A0A1F5A9Q5_9BACT5.820e-828.10Uncharacterized protein n=2 Tax=unclassified Amini... [more]
UPI0012FC30ED9.250e-628.74FG-GAP repeat protein n=1 Tax=Spirosoma panaciterr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112228contigM-pyrifera_M_contig112228:39..566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score66.2
Seed ortholog evalue1.7e-08
Seed eggNOG ortholog526222.Desal_0079
KEGG koko:K15539
Hectar predicted targeting categoryother localisation
EggNOG free text desc.domain, Protein
EggNOG OGsCOG3266@1,COG3266@2
COG Functional cat.GM
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size528
Cds size528
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815636.2365203-CDS-M-pyrifera_M_contig112228:38..5661622815636.2365203-CDS-M-pyrifera_M_contig112228:38..566Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112228 39..566 -
1692277498.5460126-CDS-M-pyrifera_M_contig112228:38..5661692277498.5460126-CDS-M-pyrifera_M_contig112228:38..566Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112228 39..566 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112228.2562.1prot_M-pyrifera_M_contig112228.2562.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112228 39..566 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112228.2562.1

>prot_M-pyrifera_M_contig112228.2562.1 ID=prot_M-pyrifera_M_contig112228.2562.1|Name=mRNA_M-pyrifera_M_contig112228.2562.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=176bp
IVGNPNSSVVYHFSKNTGGDSNWGLQNNIIGGTGTAFGQSAEIYGLEFII
GSVGGTNANGLAFIFELDGSTISSSNDAEIIHPNDIETNSGYGQAVSISE
VGFAIGAPKLDGEQYLDQGATYINDEVKLIDEIQDPNRKNFGLAVDMDGD
IVMIGAENRLFFYEKNKGETDNWGLL
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mRNA from alignment at M-pyrifera_M_contig112228:39..566-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112228.2562.1 ID=mRNA_M-pyrifera_M_contig112228.2562.1|Name=mRNA_M-pyrifera_M_contig112228.2562.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig112228:39..566- (Macrocystis pyrifera P11B4 male)
ATAGTGGGTAATCCCAATTCTAGTGTTGTATACCATTTTAGTAAAAATAC
TGGGGGAGATAGCAACTGGGGGCTCCAGAATAATATTATTGGTGGTACTG
GAACTGCATTTGGTCAATCAGCTGAAATTTATGGACTTGAATTTATTATC
GGATCTGTAGGTGGTACAAATGCAAACGGGTTAGCATTCATTTTTGAACT
TGATGGCTCCACTATATCGTCCTCGAATGACGCCGAAATTATTCATCCAA
ATGATATCGAAACAAATTCCGGTTATGGGCAAGCTGTTTCTATATCTGAA
GTAGGGTTTGCGATTGGAGCTCCAAAATTAGATGGAGAACAATATTTAGA
TCAAGGTGCAACCTATATCAATGATGAAGTAAAACTAATAGATGAAATAC
AGGATCCTAATCGTAAAAATTTTGGTCTAGCAGTTGATATGGATGGAGAT
ATTGTAATGATTGGTGCAGAAAATAGGCTTTTCTTTTATGAAAAAAATAA
AGGAGAGACAGATAATTGGGGATTGTTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112228:39..566-

>mRNA_M-pyrifera_M_contig112228.2562.1 ID=mRNA_M-pyrifera_M_contig112228.2562.1|Name=mRNA_M-pyrifera_M_contig112228.2562.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1056bp|location=Sequence derived from alignment at M-pyrifera_M_contig112228:39..566- (Macrocystis pyrifera P11B4 male)
ATAGTGGGTAATCCCAATTCTAGTGTTGTATACCATTTTAGTAAAAATAC
TGGGGGAGATAGCAACTGGGGGCTCCAGAATAATATTATTGGTGGTACTG
GAACTGCATTTGGTCAATCAGCTGAAATTTATGGACTTGAATTTATTATC
GGATCTGTAGGTGGTACAAATGCAAACGGGTTAGCATTCATTTTTGAACT
TGATGGCTCCACTATATCGTCCTCGAATGACGCCGAAATTATTCATCCAA
ATGATATCGAAACAAATTCCGGTTATGGGCAAGCTGTTTCTATATCTGAA
GTAGGGTTTGCGATTGGAGCTCCAAAATTAGATGGAGAACAATATTTAGA
TCAAGGTGCAACCTATATCAATGATGAAGTAAAACTAATAGATGAAATAC
AGGATCCTAATCGTAAAAATTTTGGTCTAGCAGTTGATATGGATGGAGAT
ATTGTAATGATTGGTGCAGAAAATAGGCTTTTCTTTTATGAAAAAAATAA
AGGAGAGACAGATAATTGGGGATTGTTAATAGTGGGTAATCCCAATTCTA
GTGTTGTATACCATTTTAGTAAAAATACTGGGGGAGATAGCAACTGGGGG
CTCCAGAATAATATTATTGGTGGTACTGGAACTGCATTTGGTCAATCAGC
TGAAATTTATGGACTTGAATTTATTATCGGATCTGTAGGTGGTACAAATG
CAAACGGGTTAGCATTCATTTTTGAACTTGATGGCTCCACTATATCGTCC
TCGAATGACGCCGAAATTATTCATCCAAATGATATCGAAACAAATTCCGG
TTATGGGCAAGCTGTTTCTATATCTGAAGTAGGGTTTGCGATTGGAGCTC
CAAAATTAGATGGAGAACAATATTTAGATCAAGGTGCAACCTATATCAAT
GATGAAGTAAAACTAATAGATGAAATACAGGATCCTAATCGTAAAAATTT
TGGTCTAGCAGTTGATATGGATGGAGATATTGTAATGATTGGTGCAGAAA
ATAGGCTTTTCTTTTATGAAAAAAATAAAGGAGAGACAGATAATTGGGGA
TTGTTA
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