mRNA_M-pyrifera_M_contig112133.2552.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112133.2552.1
Unique NamemRNA_M-pyrifera_M_contig112133.2552.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig112133.2552.1 vs. uniprot
Match: A0A7V9A5W8_9BACT (Znf/thioredoxin_put domain-containing protein n=1 Tax=Bremerella alba TaxID=980252 RepID=A0A7V9A5W8_9BACT)

HSP 1 Score: 334 bits (857), Expect = 1.350e-108
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 1 
Query:    1 PKKRSSSSGSFPVIPLVLGGVGVLVVVILVVTVISFASGGSDRPFQMNAAQQQFSKEDSYKQHFDVTEKQFDNMLQFLTAIEAIQSEEDLKQFDETVRGLTQEMESLTHGVRNIPPLPKDMQEKLKREVRQQLDSVEGRAKAAGQKLAKYTSNDRVAYAAQQYHQSHSYLGGALGAANTRSDT 549
            PKKRSSSSGSFPVIPLVLGGVGVLVVVILVVTVISFASGGSDRPFQMNAAQQQFSKEDSYKQHFDVTEKQFDNMLQFLTAIEAIQSEEDLKQFDETVRGLTQEMESLTHGVRNIPPLPKDMQEKLKREVRQQLDSVEGRAKAAGQKLAKYTSN RVAYAAQQYHQSHSYLGGALGAANTRSDT
Sbjct:   85 PKKRSSSSGSFPVIPLVLGGVGVLVVVILVVTVISFASGGSDRPFQMNAAQQQFSKEDSYKQHFDVTEKQFDNMLQFLTAIEAIQSEEDLKQFDETVRGLTQEMESLTHGVRNIPPLPKDMQEKLKREVRQQLDSVEGRAKAAGQKLAKYTSNARVAYAAQQYHQSHSYLGGALGAANTRSDT 267
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BLAST of mRNA_M-pyrifera_M_contig112133.2552.1 vs. uniprot
Match: UPI001CCCA045 (zinc-ribbon domain-containing protein n=1 Tax=Bremerella volcania TaxID=2527984 RepID=UPI001CCCA045)

HSP 1 Score: 123 bits (309), Expect = 2.060e-29
Identity = 72/160 (45.00%), Postives = 108/160 (67.50%), Query Frame = 1 
Query:    1 PKKRSSSSGSFPVIPLVLGGVGVLVVVILVVTVISFAS------GGSDRPFQMNAAQQQFSKEDSYKQHFDVTEKQFDNMLQFLTAIEAIQSEEDLKQFDETVRGLTQEMESLTHGVRNIPPLPKDMQEKLKREVRQQLDSVEGRAKAAGQKLAKYTSND 462
            PKKR+ SSGSFP++P+VLGGVG+LVV ILV+TV+S AS      GGS   F  N+       E + +QH D+  KQ ++ ++F+ AIEAIQ + DL  F + + GLT+EMESL   V+ +P +P++  +++ +E +Q+L  +EGR +AAG+KL ++   D
Sbjct:   91 PKKRTKSSGSFPIVPVVLGGVGLLVVGILVITVVSLASNGLGDLGGSGGGFASNSVD-----ESAVQQHRDIAMKQHNSTIKFIEAIEAIQGDGDLPGFKQKIEGLTREMESLAESVKTVPAIPEERVQEINKENKQRLLKLEGRMRAAGEKLRQFNKPD 245
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112133.2552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7V9A5W8_9BACT1.350e-10899.45Znf/thioredoxin_put domain-containing protein n=1 ... [more]
UPI001CCCA0452.060e-2945.00zinc-ribbon domain-containing protein n=1 Tax=Brem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112133contigM-pyrifera_M_contig112133:1..549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size549
Cds size549
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815635.3799484-CDS-M-pyrifera_M_contig112133:0..5491622815635.3799484-CDS-M-pyrifera_M_contig112133:0..549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112133 1..549 +
1692277498.0585139-CDS-M-pyrifera_M_contig112133:0..5491692277498.0585139-CDS-M-pyrifera_M_contig112133:0..549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112133 1..549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112133.2552.1prot_M-pyrifera_M_contig112133.2552.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112133 1..549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112133.2552.1

>prot_M-pyrifera_M_contig112133.2552.1 ID=prot_M-pyrifera_M_contig112133.2552.1|Name=mRNA_M-pyrifera_M_contig112133.2552.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=183bp
PKKRSSSSGSFPVIPLVLGGVGVLVVVILVVTVISFASGGSDRPFQMNAA
QQQFSKEDSYKQHFDVTEKQFDNMLQFLTAIEAIQSEEDLKQFDETVRGL
TQEMESLTHGVRNIPPLPKDMQEKLKREVRQQLDSVEGRAKAAGQKLAKY
TSNDRVAYAAQQYHQSHSYLGGALGAANTRSDT
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mRNA from alignment at M-pyrifera_M_contig112133:1..549+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112133.2552.1 ID=mRNA_M-pyrifera_M_contig112133.2552.1|Name=mRNA_M-pyrifera_M_contig112133.2552.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=549bp|location=Sequence derived from alignment at M-pyrifera_M_contig112133:1..549+ (Macrocystis pyrifera P11B4 male)
CCGAAAAAGAGAAGCAGTTCCTCCGGATCGTTCCCCGTGATACCGCTAGT
GTTGGGTGGCGTCGGCGTGCTGGTGGTGGTCATCTTAGTTGTCACGGTGA
TTTCATTTGCTTCCGGCGGTTCCGACCGGCCCTTTCAGATGAACGCCGCC
CAGCAGCAGTTTAGTAAAGAGGACAGCTACAAGCAGCATTTTGACGTAAC
AGAAAAACAATTTGACAACATGCTTCAGTTCCTTACAGCGATCGAAGCGA
TTCAAAGCGAAGAGGACTTAAAGCAATTCGACGAAACGGTCAGAGGCCTG
ACTCAGGAAATGGAGTCATTAACCCATGGAGTCCGCAACATTCCACCGCT
GCCCAAGGACATGCAGGAAAAACTAAAGCGAGAAGTCAGGCAGCAGCTTG
ATAGCGTAGAAGGTAGGGCCAAAGCTGCCGGACAGAAATTGGCGAAGTAC
ACCAGTAATGATCGTGTTGCGTATGCTGCCCAGCAGTATCATCAATCCCA
CAGCTACCTGGGTGGGGCTTTGGGCGCGGCCAATACTCGGTCGGACACG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112133:1..549+

>mRNA_M-pyrifera_M_contig112133.2552.1 ID=mRNA_M-pyrifera_M_contig112133.2552.1|Name=mRNA_M-pyrifera_M_contig112133.2552.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1098bp|location=Sequence derived from alignment at M-pyrifera_M_contig112133:1..549+ (Macrocystis pyrifera P11B4 male)
CCGAAAAAGAGAAGCAGTTCCTCCGGATCGTTCCCCGTGATACCGCTAGT
GTTGGGTGGCGTCGGCGTGCTGGTGGTGGTCATCTTAGTTGTCACGGTGA
TTTCATTTGCTTCCGGCGGTTCCGACCGGCCCTTTCAGATGAACGCCGCC
CAGCAGCAGTTTAGTAAAGAGGACAGCTACAAGCAGCATTTTGACGTAAC
AGAAAAACAATTTGACAACATGCTTCAGTTCCTTACAGCGATCGAAGCGA
TTCAAAGCGAAGAGGACTTAAAGCAATTCGACGAAACGGTCAGAGGCCTG
ACTCAGGAAATGGAGTCATTAACCCATGGAGTCCGCAACATTCCACCGCT
GCCCAAGGACATGCAGGAAAAACTAAAGCGAGAAGTCAGGCAGCAGCTTG
ATAGCGTAGAAGGTAGGGCCAAAGCTGCCGGACAGAAATTGGCGAAGTAC
ACCAGTAATGATCGTGTTGCGTATGCTGCCCAGCAGTATCATCAATCCCA
CAGCTACCTGGGTGGGGCTTTGGGCGCGGCCAATACTCGGTCGGACACGC
CGAAAAAGAGAAGCAGTTCCTCCGGATCGTTCCCCGTGATACCGCTAGTG
TTGGGTGGCGTCGGCGTGCTGGTGGTGGTCATCTTAGTTGTCACGGTGAT
TTCATTTGCTTCCGGCGGTTCCGACCGGCCCTTTCAGATGAACGCCGCCC
AGCAGCAGTTTAGTAAAGAGGACAGCTACAAGCAGCATTTTGACGTAACA
GAAAAACAATTTGACAACATGCTTCAGTTCCTTACAGCGATCGAAGCGAT
TCAAAGCGAAGAGGACTTAAAGCAATTCGACGAAACGGTCAGAGGCCTGA
CTCAGGAAATGGAGTCATTAACCCATGGAGTCCGCAACATTCCACCGCTG
CCCAAGGACATGCAGGAAAAACTAAAGCGAGAAGTCAGGCAGCAGCTTGA
TAGCGTAGAAGGTAGGGCCAAAGCTGCCGGACAGAAATTGGCGAAGTACA
CCAGTAATGATCGTGTTGCGTATGCTGCCCAGCAGTATCATCAATCCCAC
AGCTACCTGGGTGGGGCTTTGGGCGCGGCCAATACTCGGTCGGACACG
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