mRNA_M-pyrifera_M_contig112062.2525.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112062.2525.1
Unique NamemRNA_M-pyrifera_M_contig112062.2525.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig112062.2525.1 vs. uniprot
Match: A0A6A6L0Q1_HEVBR (Uncharacterized protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6L0Q1_HEVBR)

HSP 1 Score: 94.0 bits (232), Expect = 2.620e-23
Identity = 46/69 (66.67%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 RYASPTVSKLLVGNKCDLKDRQVVTTEMARSFAEELGMTFLETSAKDSVNVEKAFMTMAAEIKESMPAQ 207
            RYA+ +V KLLVGNKCDL D +VV T+ A++FA+ELG+ FLETSAKDS+NVE+AF+TMA EIK+ M +Q
Sbjct:   24 RYANDSVCKLLVGNKCDLVDNKVVDTQTAKAFADELGIPFLETSAKDSINVEQAFLTMAGEIKKKMGSQ 92
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BLAST of mRNA_M-pyrifera_M_contig112062.2525.1 vs. uniprot
Match: UPI0005D41CBC (ras-related protein RIC1 isoform X1 n=2 Tax=Amborella trichopoda TaxID=13333 RepID=UPI0005D41CBC)

HSP 1 Score: 96.3 bits (238), Expect = 2.770e-23
Identity = 49/69 (71.01%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 RYASPTVSKLLVGNKCDLKDRQVVTTEMARSFAEELGMTFLETSAKDSVNVEKAFMTMAAEIKESMPAQ 207
            RYAS  VSKLLVGNKCDL + +VV TE A++FA+ELG+ FLETSAKDS+NVE+AF+TMAAEIK+ M  Q
Sbjct:  108 RYASDNVSKLLVGNKCDLVENKVVDTEKAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKKRMGNQ 176
[Close]
BLAST of mRNA_M-pyrifera_M_contig112062.2525.1 vs. uniprot
Match: A0A1S4DZ15_CUCME (ras-related protein RABD1 isoform X2 n=6 Tax=rosids TaxID=71275 RepID=A0A1S4DZ15_CUCME)

HSP 1 Score: 95.1 bits (235), Expect = 5.250e-23
Identity = 47/69 (68.12%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 RYASPTVSKLLVGNKCDLKDRQVVTTEMARSFAEELGMTFLETSAKDSVNVEKAFMTMAAEIKESMPAQ 207
            RYA+ +V KLLVGNKCDL + +VV T+ A++FAEELG+ FLETSAKDS+NVE+AF+TMAAEIK+ M +Q
Sbjct:   92 RYANDSVCKLLVGNKCDLVENKVVDTQTAKAFAEELGIPFLETSAKDSINVEQAFLTMAAEIKKKMGSQ 160
[Close]
BLAST of mRNA_M-pyrifera_M_contig112062.2525.1 vs. uniprot
Match: A0A843W6R0_COLES (Uncharacterized protein n=8 Tax=Magnoliopsida TaxID=3398 RepID=A0A843W6R0_COLES)

HSP 1 Score: 94.7 bits (234), Expect = 1.110e-22
Identity = 47/69 (68.12%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 RYASPTVSKLLVGNKCDLKDRQVVTTEMARSFAEELGMTFLETSAKDSVNVEKAFMTMAAEIKESMPAQ 207
            RYAS  V KLLVGNKCDL + +VV TE A++FA+ELG+ FLETSAKDS+NVE+AF+TM+AEIK+ M +Q
Sbjct:  108 RYASDNVCKLLVGNKCDLVENKVVDTEKAKAFADELGIPFLETSAKDSINVEQAFLTMSAEIKKRMASQ 176
[Close]
BLAST of mRNA_M-pyrifera_M_contig112062.2525.1 vs. uniprot
Match: Q1SL04_MEDTR (Putative small GTPase superfamily, P-loop containing nucleoside triphosphate hydrolase n=6 Tax=IRL clade TaxID=2233839 RepID=Q1SL04_MEDTR)

HSP 1 Score: 94.7 bits (234), Expect = 1.130e-22
Identity = 47/69 (68.12%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 RYASPTVSKLLVGNKCDLKDRQVVTTEMARSFAEELGMTFLETSAKDSVNVEKAFMTMAAEIKESMPAQ 207
            RYA+ +VSKLLVGNKCDL D ++V T  A++FA+ELG+ FLETSAKDS+NVE+AF+TMAAEIK  M +Q
Sbjct:  109 RYANHSVSKLLVGNKCDLTDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQ 177
[Close]
BLAST of mRNA_M-pyrifera_M_contig112062.2525.1 vs. uniprot
Match: UPI000809ACAE (ras-related protein RABD1-like isoform X2 n=1 Tax=Phaseolus angularis TaxID=3914 RepID=UPI000809ACAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.230e-22
Identity = 46/69 (66.67%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 RYASPTVSKLLVGNKCDLKDRQVVTTEMARSFAEELGMTFLETSAKDSVNVEKAFMTMAAEIKESMPAQ 207
            RYA+ +V KLLVGNKCDL D +VV ++ A++FA+ELG+ FLETSAKDS+NVE+AF+TMAAEIK+ M +Q
Sbjct:   84 RYANDSVCKLLVGNKCDLVDNKVVDSQTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKKKMGSQ 152
[Close]
BLAST of mRNA_M-pyrifera_M_contig112062.2525.1 vs. uniprot
Match: U5DC42_AMBTC (Uncharacterized protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=U5DC42_AMBTC)

HSP 1 Score: 96.3 bits (238), Expect = 1.260e-22
Identity = 49/69 (71.01%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 RYASPTVSKLLVGNKCDLKDRQVVTTEMARSFAEELGMTFLETSAKDSVNVEKAFMTMAAEIKESMPAQ 207
            RYAS  VSKLLVGNKCDL + +VV TE A++FA+ELG+ FLETSAKDS+NVE+AF+TMAAEIK+ M  Q
Sbjct:  108 RYASDNVSKLLVGNKCDLVENKVVDTEKAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKKRMGNQ 176
[Close]
BLAST of mRNA_M-pyrifera_M_contig112062.2525.1 vs. uniprot
Match: A0A3S3MV25_9MAGN (Ras-related protein RABD1 isoform X1 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3MV25_9MAGN)

HSP 1 Score: 94.4 bits (233), Expect = 1.530e-22
Identity = 46/69 (66.67%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 RYASPTVSKLLVGNKCDLKDRQVVTTEMARSFAEELGMTFLETSAKDSVNVEKAFMTMAAEIKESMPAQ 207
            RYAS +V KLLVGNKCDL + +VV T+MA+++A+ELG+ FLETSAKDS+NVE+AF+TMA EIK+ M +Q
Sbjct:  108 RYASDSVCKLLVGNKCDLVENKVVDTQMAKAYADELGIPFLETSAKDSINVEQAFLTMAGEIKKRMGSQ 176
[Close]
BLAST of mRNA_M-pyrifera_M_contig112062.2525.1 vs. uniprot
Match: A0A6A6L0T9_HEVBR (Uncharacterized protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6L0T9_HEVBR)

HSP 1 Score: 94.0 bits (232), Expect = 1.560e-22
Identity = 46/69 (66.67%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 RYASPTVSKLLVGNKCDLKDRQVVTTEMARSFAEELGMTFLETSAKDSVNVEKAFMTMAAEIKESMPAQ 207
            RYA+ +V KLLVGNKCDL D +VV T+ A++FA+ELG+ FLETSAKDS+NVE+AF+TMA EIK+ M +Q
Sbjct:   93 RYANDSVCKLLVGNKCDLVDNKVVDTQTAKAFADELGIPFLETSAKDSINVEQAFLTMAGEIKKKMGSQ 161
[Close]
BLAST of mRNA_M-pyrifera_M_contig112062.2525.1 vs. uniprot
Match: A0A804IJ56_MUSAM ((wild Malaysian banana) hypothetical protein n=2 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804IJ56_MUSAM)

HSP 1 Score: 94.4 bits (233), Expect = 1.560e-22
Identity = 47/69 (68.12%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:    1 RYASPTVSKLLVGNKCDLKDRQVVTTEMARSFAEELGMTFLETSAKDSVNVEKAFMTMAAEIKESMPAQ 207
            RYAS  V+KLLVGNKCDL D +VV+ E  ++FA+E+G+ FLETSAKDS NVEKAFMTMAA+IK+ M +Q
Sbjct:  108 RYASENVNKLLVGNKCDLTDGRVVSYETGKAFADEIGIPFLETSAKDSTNVEKAFMTMAADIKDRMASQ 176
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112062.2525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A6L0Q1_HEVBR2.620e-2366.67Uncharacterized protein n=1 Tax=Hevea brasiliensis... [more]
UPI0005D41CBC2.770e-2371.01ras-related protein RIC1 isoform X1 n=2 Tax=Ambore... [more]
A0A1S4DZ15_CUCME5.250e-2368.12ras-related protein RABD1 isoform X2 n=6 Tax=rosid... [more]
A0A843W6R0_COLES1.110e-2268.12Uncharacterized protein n=8 Tax=Magnoliopsida TaxI... [more]
Q1SL04_MEDTR1.130e-2268.12Putative small GTPase superfamily, P-loop containi... [more]
UPI000809ACAE1.230e-2266.67ras-related protein RABD1-like isoform X2 n=1 Tax=... [more]
U5DC42_AMBTC1.260e-2271.01Uncharacterized protein n=1 Tax=Amborella trichopo... [more]
A0A3S3MV25_9MAGN1.530e-2266.67Ras-related protein RABD1 isoform X1 n=1 Tax=Cinna... [more]
A0A6A6L0T9_HEVBR1.560e-2266.67Uncharacterized protein n=1 Tax=Hevea brasiliensis... [more]
A0A804IJ56_MUSAM1.560e-2268.12(wild Malaysian banana) hypothetical protein n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112062contigM-pyrifera_M_contig112062:23..310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score98.6
Seed ortholog evalue1.2e-18
Seed eggNOG ortholog13333.ERN20074
KEGG koko:K07874
KEGG Pathwayko05134,map05134
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005886,GO:0006810,GO:0006888,GO:0008092,GO:0008150,GO:0012505,GO:0016020,GO:0016192,GO:0017022,GO:0030742,GO:0031090,GO:0031984,GO:0032029,GO:0032036,GO:0032588,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0071944,GO:0080115,GO:0098588,GO:0098791
EggNOG free text desc.Ras-related protein
EggNOG OGs37PGN@33090,3GD0A@35493,KOG0084@1,KOG0084@2759
COG Functional cat.U
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Exons2
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.188623-CDS-M-pyrifera_M_contig112062:22..881622815634.188623-CDS-M-pyrifera_M_contig112062:22..88Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112062 23..88 +
1692277497.53343-CDS-M-pyrifera_M_contig112062:22..881692277497.53343-CDS-M-pyrifera_M_contig112062:22..88Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112062 23..88 +
1622815634.1987257-CDS-M-pyrifera_M_contig112062:169..3101622815634.1987257-CDS-M-pyrifera_M_contig112062:169..310Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112062 170..310 +
1692277497.546674-CDS-M-pyrifera_M_contig112062:169..3101692277497.546674-CDS-M-pyrifera_M_contig112062:169..310Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112062 170..310 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112062.2525.1prot_M-pyrifera_M_contig112062.2525.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112062 23..310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112062.2525.1

>prot_M-pyrifera_M_contig112062.2525.1 ID=prot_M-pyrifera_M_contig112062.2525.1|Name=mRNA_M-pyrifera_M_contig112062.2525.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
RYASPTVSKLLVGNKCDLKDRQVVTTEMARSFAEELGMTFLETSAKDSVN
VEKAFMTMAAEIKESMPAQ
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mRNA from alignment at M-pyrifera_M_contig112062:23..310+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112062.2525.1 ID=mRNA_M-pyrifera_M_contig112062.2525.1|Name=mRNA_M-pyrifera_M_contig112062.2525.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig112062:23..310+ (Macrocystis pyrifera P11B4 male)
AGGTACGCGTCCCCCACCGTGTCCAAGCTGCTGGTGGGTAACAAGTGCGA
TCTGAAGGACCGGCAGGTAAGCGCTAGTGAGCTGTGAGCATGTACACGCG
CGCGCGCGCGTGCACACACACATACACACACAATCGTGTACGTACAGGTG
GTGACCACGGAGATGGCTCGCTCGTTCGCGGAGGAGCTGGGCATGACGTT
CCTGGAGACGTCGGCGAAGGACTCGGTGAACGTGGAGAAGGCGTTCATGA
CGATGGCTGCGGAGATCAAGGAGAGCATGCCGGCGCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112062:23..310+

>mRNA_M-pyrifera_M_contig112062.2525.1 ID=mRNA_M-pyrifera_M_contig112062.2525.1|Name=mRNA_M-pyrifera_M_contig112062.2525.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig112062:23..310+ (Macrocystis pyrifera P11B4 male)
AGGTACGCGTCCCCCACCGTGTCCAAGCTGCTGGTGGGTAACAAGTGCGA
TCTGAAGGACCGGCAGAGGTACGCGTCCCCCACCGTGTCCAAGCTGCTGG
TGGGTAACAAGTGCGATCTGAAGGACCGGCAGGTGGTGACCACGGAGATG
GCTCGCTCGTTCGCGGAGGAGCTGGGCATGACGTTCCTGGAGACGTCGGC
GAAGGACTCGGTGAACGTGGAGAAGGCGTTCATGACGATGGCTGCGGAGA
TCAAGGAGAGCATGCCGGCGCAGGTGGTGACCACGGAGATGGCTCGCTCG
TTCGCGGAGGAGCTGGGCATGACGTTCCTGGAGACGTCGGCGAAGGACTC
GGTGAACGTGGAGAAGGCGTTCATGACGATGGCTGCGGAGATCAAGGAGA
GCATGCCGGCGCAG
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