mRNA_M-pyrifera_M_contig111969.2508.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111969.2508.1
Unique NamemRNA_M-pyrifera_M_contig111969.2508.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111969.2508.1 vs. uniprot
Match: A0A2H0FSA7_9BACT (Uncharacterized protein n=1 Tax=Ignavibacteriales bacterium CG18_big_fil_WC_8_21_14_2_50_31_20 TaxID=1974047 RepID=A0A2H0FSA7_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 4.030e-6
Identity = 47/151 (31.13%), Postives = 68/151 (45.03%), Query Frame = 1
Query:   58 NNNIKDYKKKKFHHAWCHGSPGIVLSRI-PYYVQTNNI---EKLSTLSSSLVRACKMNHINYSPTICCGIGGIIYSMIELNEKLDKKGIQAIVNSGWGRSLKE-----------------EPSLFKGIAGVGMLMLR-FYKKLDETIVYPN 444
            +N    Y KK  + AWCHG+PGI LSRI  Y +  +NI   E  + +  ++    +    NYS  +C GIGG    +IE+   LD      I      + +K+                 +PSL  G AG+G   LR F KK+   ++  N
Sbjct:  281 DNAFSSYNKKLMN-AWCHGAPGIGLSRIRTYKILNDNIYFEETENAIRGTINYLEERIGANYS--LCHGIGGNCDLLIEVANNLDNNSYYKIAEEYGLKGIKDYENLNKKWPCGTMGFVSDPSLMLGEAGIGYFYLRLFSKKVPSVLLITN 428          
BLAST of mRNA_M-pyrifera_M_contig111969.2508.1 vs. uniprot
Match: A0A2U1QYG7_9FLAO (Uncharacterized protein n=1 Tax=Flavobacterium sp. HTF TaxID=2170732 RepID=A0A2U1QYG7_9FLAO)

HSP 1 Score: 55.1 bits (131), Expect = 6.540e-6
Identity = 42/139 (30.22%), Postives = 66/139 (47.48%), Query Frame = 1
Query:  100 AWCHGSPGIVLSRI------PYYVQTNNIEK-LSTLSSSLVRACKMNHINYSPTICCGIGGIIYSMIELNEKLDKKGIQAIVNSG----------WGRSLKE---EPSLFKGIAGVGMLMLRFY-KKLDETIVYPNLDL 453
            AWCHG+PGI +SR+      P  V TN +   L+T S S+  +   N  N + +IC GI G    +++      ++  +A+ N+G          W   L      P L  G+AG G   LR + K+  ++++ P L L
Sbjct:  271 AWCHGAPGITISRLKANQLYPDQVFTNEMNTALTTTSKSIYNSLIENLSNTNYSICHGIAGNADIILDCGGTEYQQLAEAVGNAGISKYQDNNIQWSTGLSTGHYTPGLMMGVAGTGYFYLRLFDKEKHKSLLVPQLGL 409          
BLAST of mRNA_M-pyrifera_M_contig111969.2508.1 vs. uniprot
Match: UPI001747A8B0 (type 2 lanthipeptide synthetase LanM n=1 Tax=Mucilaginibacter rigui TaxID=534635 RepID=UPI001747A8B0)

HSP 1 Score: 55.1 bits (131), Expect = 7.600e-6
Identity = 39/120 (32.50%), Postives = 61/120 (50.83%), Query Frame = 1
Query:  100 AWCHGSPGIVLSRIPYYVQTNNIEKLSTLSSSLVRACKMNHINYSPTICCGIGGIIYSMIELNEKLDK--------KGIQAIVNS----GWGRSLK------EEPSLFKGIAGVGMLMLR 405
            AWCHG+PGI L+R+  Y    +   L  + ++L+ A K + ++ +   CCG  G I  +IE    L +        K + A++N     GW ++        E PSLF+G AG+G  +LR
Sbjct:  801 AWCHGAPGIGLARLHAYHILKDEALLQDVETALI-ATKKHLLSDTDFYCCGNTGRIDFLIEAAMVLGRPALLQDARKALVALLNRKNNRGWYQTYDVENVGMENPSLFRGTAGIGYTLLR 919          
BLAST of mRNA_M-pyrifera_M_contig111969.2508.1 vs. uniprot
Match: A0A495MDE7_9FLAO (Lanthionine synthetase-like protein n=2 Tax=Flavobacterium TaxID=237 RepID=A0A495MDE7_9FLAO)

HSP 1 Score: 54.7 bits (130), Expect = 8.880e-6
Identity = 45/128 (35.16%), Postives = 60/128 (46.88%), Query Frame = 1
Query:  100 AWCHGSPGIVLSRIPYY------VQTNNIEK-LSTLSSSLVRAC--KMNHINYSPTICCGIGGIIYSMIE--------LNEKLDKKGIQAIVNS--GWGRSLKE---EPSLFKGIAGVGMLMLRFYKK 417
            AWCHG+PGI LSR+         V T  +E  L+T +SS+ R     +N+ NYS  +C GI G    +++        L E +   GIQ   N+   W   L      P L  GIAG G   LR + K
Sbjct:  270 AWCHGAPGIALSRLKANQVKADAVFTQEMEAALTTTTSSVYRVLTDNLNNTNYS--LCHGIAGNAEILLDCGGTEYHQLAEAIGTAGIQKYQNNRISWPTGLNTGQYTPGLMMGIAGTGYFYLRLFNK 395          
BLAST of mRNA_M-pyrifera_M_contig111969.2508.1 vs. uniprot
Match: UPI001AE6D2C2 (hypothetical protein n=1 Tax=Flavobacterium sp. 1355 TaxID=2806571 RepID=UPI001AE6D2C2)

HSP 1 Score: 54.7 bits (130), Expect = 8.890e-6
Identity = 42/139 (30.22%), Postives = 66/139 (47.48%), Query Frame = 1
Query:  100 AWCHGSPGIVLSRI------PYYVQTNNIEK-LSTLSSSLVRACKMNHINYSPTICCGIGGIIYSMIELNEKLDKKGIQAIVNSG----------WGRSLKE---EPSLFKGIAGVGMLMLRFY-KKLDETIVYPNLDL 453
            AWCHG+PGI +SR+      P  V TN ++  L+T S S+ +    N  N + +IC GI G    +++      ++  +A+ N+G          W   L      P L  G+AG G   LR + K   ++++ P L L
Sbjct:  271 AWCHGAPGITISRLKANELHPNTVFTNELKTALTTTSKSIYQNLIENLANTNYSICHGIAGNADIILDCGGTEYQQLAEAVGNAGISKYKDNNIQWSTGLSTGHYTPGLMMGLAGTGYFYLRLFDKNKHKSLLLPQLGL 409          
BLAST of mRNA_M-pyrifera_M_contig111969.2508.1 vs. uniprot
Match: A0A0Q5UY90_9FLAO (Uncharacterized protein n=4 Tax=Flavobacterium TaxID=237 RepID=A0A0Q5UY90_9FLAO)

HSP 1 Score: 54.3 bits (129), Expect = 1.210e-5
Identity = 51/142 (35.92%), Postives = 64/142 (45.07%), Query Frame = 1
Query:  100 AWCHGSPGIVLSRIP--------YYVQTNNIEKLSTLSSSLVRAC--KMNHINYSPTICCGI----------GGIIYSMIELNEKLDKKGIQAIVNSG--WGRSLKE---EPSLFKGIAGVGMLMLR-FYKKLDETIVYPNL 447
            AWCHG+PGI LSR+          +VQ  N+  L T +SS+  A    +N  NYS  +C GI          GGI Y   +L E +   GIQ    +   W   L      P L  GIAG G   LR F K   +T + P L
Sbjct:  270 AWCHGAPGIALSRLKANQAKADAVFVQEMNVA-LKTTASSIYHALTDNLNTTNYS--LCHGIAGNAEILLDCGGIEYH--QLAEAVGTAGIQKYQKNRIPWPTGLNTGQYTPGLMMGIAGTGYFYLRLFNKNRHKTFLVPGL 406          
BLAST of mRNA_M-pyrifera_M_contig111969.2508.1 vs. uniprot
Match: UPI001F19E041 (hypothetical protein n=1 Tax=Fulvivirga sp. W9P-11 TaxID=2904246 RepID=UPI001F19E041)

HSP 1 Score: 54.3 bits (129), Expect = 1.330e-5
Identity = 50/170 (29.41%), Postives = 82/170 (48.24%), Query Frame = 1
Query:   10 GFAHSKAFDHLVSEYGNNNIKDYKKKKFHHAWCHGSPGIVLSRIPYYVQTNNIEKLSTLSSSLVRACK-MNHINYSP---TICCGIGGIIYSMIELN------------EKLDKKGIQAI-----VNSGWGRSL-KEEPSLFKGIAGVGMLMLRFYK-KLDE-TIVYPNL 447
            GF  +++F+    EY + N   + ++K   AWCHG+PG+ LSRI  +      + L  L+ +  +  + + +IN  P    +C G GG    ++EL+            EK+ K+ + +       NSG+  +  K + SLF G AG+G   L   K K+   TI+ P L
Sbjct:  257 GFYDNESFEIQKKEYLDGNKGFFFQEKDMIAWCHGAPGVGLSRIKAFQVLGKSDYLRDLNRAATKTVESLENINALPGCFVLCHGGGGNALFLMELDRFNNANEYYSLVEKVAKRSLDSYNQYGYYNSGYAFAKDKTDISLFMGDAGIGYFYLLVSKGKISSPTILKPEL 426          
BLAST of mRNA_M-pyrifera_M_contig111969.2508.1 vs. uniprot
Match: D2QKP7_SPILD (Lanthionine synthetase C family protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) TaxID=504472 RepID=D2QKP7_SPILD)

HSP 1 Score: 54.3 bits (129), Expect = 1.340e-5
Identity = 52/170 (30.59%), Postives = 83/170 (48.82%), Query Frame = 1
Query:    1 DFRGFAHSKAFDH-LVSEYGNNNIKDYKKKKFHHAWCHGSPGIVLSRIPYYVQTNNIEKLSTLSSSLVRACK---MNHINYSPTICCGIGG----IIYSMIELNE--------KLDKKGIQAIVNSGWGR--SLKEEP--SLFKGIAGVGMLMLRF-YKKLDETIVYPNL 447
            DFR  ++SK  ++       N ++  + K+KF  AWCHG+PGI LSR+  +  T N   L+ L  ++           IN S  +C G  G    +I + +  N+        K+ KK +Q     G+ R  SL ++P  +LF G +GVG+  LR  +     +++YP L
Sbjct:  260 DFRKGSYSKKDENEFRRSLINKDLYPFIKEKFMFAWCHGAPGIGLSRLRAHQITGNKTWLNDLEMAITSTSHDLDNTGIN-SYCLCHGGAGNADLLIEAFLYTNKQDYFEAALKVGKKALQQKEQLGYYRPGSLTDKPDAALFTGTSGVGLFYLRLLFPSSIHSVLYPVL 428          
BLAST of mRNA_M-pyrifera_M_contig111969.2508.1 vs. uniprot
Match: A0A0J0YJZ2_9FLAO (Uncharacterized protein n=2 Tax=unclassified Flavobacterium TaxID=196869 RepID=A0A0J0YJZ2_9FLAO)

HSP 1 Score: 53.9 bits (128), Expect = 1.640e-5
Identity = 45/142 (31.69%), Postives = 64/142 (45.07%), Query Frame = 1
Query:  100 AWCHGSPGIVLSRI--------PYYVQTNNIEKLSTLSSSLVRACKMNHINYSPTICCGI----------GGIIYSMIELNEKLDKKGIQAIVNSG--WGRSLKE---EPSLFKGIAGVGMLMLRFYKK-LDETIVYPNLDL 453
            AWCHG+PGI +SR+        P +    NI  L+T ++S+ +    N  + + +IC GI          GGI Y   +L E +   GI    N+   W   L      P L  GIAG G   LR   K   ++++ P L L
Sbjct:  271 AWCHGAPGITISRLKANQLDSNPVFTNEMNIA-LATTANSVYQGLMENLTSTNYSICHGIAGNADIMMDCGGIEYQ--QLAEAVGNAGISKYPNNNMQWSTGLSSGQYTPGLMMGIAGTGYFYLRLLNKDKHKSVLLPQLGL 409          
BLAST of mRNA_M-pyrifera_M_contig111969.2508.1 vs. uniprot
Match: UPI00141EE4CA (hypothetical protein n=1 Tax=Flavobacterium sp. JXAS1 TaxID=2204302 RepID=UPI00141EE4CA)

HSP 1 Score: 53.5 bits (127), Expect = 2.230e-5
Identity = 41/140 (29.29%), Postives = 66/140 (47.14%), Query Frame = 1
Query:  100 AWCHGSPGIVLSRI--------PYYVQTNNIEKLSTLSSSLVRACKMNHINYSPTICCGIGGIIYSMIELNEKLDKKGIQAIVNSG----------WGRSLKE---EPSLFKGIAGVGMLMLRFYKK-LDETIVYPNLDL 453
            AWCHG+PGI +SR+        P +V    I  L+T ++S+ ++   N  N + +IC GI G    +++   K  ++  +A+ N+G          W   L      P L  G+AG G   LR   K   ++++ P L L
Sbjct:  271 AWCHGAPGITISRLKANQLHPDPVFVSEMGIA-LTTTTNSVYQSLMENLTNTNYSICHGIAGNADIIMDCGGKEYQELAEAVGNAGIHKYQNNTIQWPTGLSTGQYTPGLMMGVAGTGYFYLRLLNKDKHKSVLVPQLGL 409          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111969.2508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A2H0FSA7_9BACT4.030e-631.13Uncharacterized protein n=1 Tax=Ignavibacteriales ... [more]
A0A2U1QYG7_9FLAO6.540e-630.22Uncharacterized protein n=1 Tax=Flavobacterium sp.... [more]
UPI001747A8B07.600e-632.50type 2 lanthipeptide synthetase LanM n=1 Tax=Mucil... [more]
A0A495MDE7_9FLAO8.880e-635.16Lanthionine synthetase-like protein n=2 Tax=Flavob... [more]
UPI001AE6D2C28.890e-630.22hypothetical protein n=1 Tax=Flavobacterium sp. 13... [more]
A0A0Q5UY90_9FLAO1.210e-535.92Uncharacterized protein n=4 Tax=Flavobacterium Tax... [more]
UPI001F19E0411.330e-529.41hypothetical protein n=1 Tax=Fulvivirga sp. W9P-11... [more]
D2QKP7_SPILD1.340e-530.59Lanthionine synthetase C family protein n=1 Tax=Sp... [more]
A0A0J0YJZ2_9FLAO1.640e-531.69Uncharacterized protein n=2 Tax=unclassified Flavo... [more]
UPI00141EE4CA2.230e-529.29hypothetical protein n=1 Tax=Flavobacterium sp. JX... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111969contigM-pyrifera_M_contig111969:5..526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size471
Cds size471
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.4510314-CDS-M-pyrifera_M_contig111969:4..3331622815633.4510314-CDS-M-pyrifera_M_contig111969:4..333Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111969 5..333 +
1692277497.2131515-CDS-M-pyrifera_M_contig111969:4..3331692277497.2131515-CDS-M-pyrifera_M_contig111969:4..333Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111969 5..333 +
1622815633.463923-CDS-M-pyrifera_M_contig111969:384..5261622815633.463923-CDS-M-pyrifera_M_contig111969:384..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111969 385..526 +
1692277497.224206-CDS-M-pyrifera_M_contig111969:384..5261692277497.224206-CDS-M-pyrifera_M_contig111969:384..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111969 385..526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111969.2508.1prot_M-pyrifera_M_contig111969.2508.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111969 5..526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111969.2508.1

>prot_M-pyrifera_M_contig111969.2508.1 ID=prot_M-pyrifera_M_contig111969.2508.1|Name=mRNA_M-pyrifera_M_contig111969.2508.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=157bp
DFRGFAHSKAFDHLVSEYGNNNIKDYKKKKFHHAWCHGSPGIVLSRIPYY
VQTNNIEKLSTLSSSLVRACKMNHINYSPTICCGIGGIIYSMIELNEKLD
KKGIQAIVNSGWGRSLKEEPSLFKGIAGVGMLMLRFYKKLDETIVYPNLD
LDSIIKN
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mRNA from alignment at M-pyrifera_M_contig111969:5..526+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111969.2508.1 ID=mRNA_M-pyrifera_M_contig111969.2508.1|Name=mRNA_M-pyrifera_M_contig111969.2508.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig111969:5..526+ (Macrocystis pyrifera P11B4 male)
GATTTCAGAGGGTTTGCTCATTCTAAAGCATTTGATCATTTAGTTAGTGA ATACGGCAATAATAATATCAAAGACTATAAGAAAAAGAAATTCCACCATG CTTGGTGTCACGGTTCACCAGGTATAGTTCTGAGTCGAATTCCATACTAT GTCCAAACAAATAATATAGAGAAGCTAAGCACTCTTTCTAGTTCTCTTGT GAGAGCCTGCAAAATGAATCACATTAATTATTCTCCAACTATTTGCTGCG GAATTGGTGGAATAATTTATAGTATGATAGAATTAAACGAAAAGTTGGAT AAAAAAGGAATTCAAGCCATAGTTAATAGGTCCATTCTAGATATACTTAA AAAAAAGGAGCTAAGCGGGTATTACCATAGTGGTTGGGGAAGATCTCTAA AAGAAGAACCAAGTTTGTTCAAGGGAATTGCCGGTGTCGGTATGTTAATG TTGAGATTTTATAAAAAATTAGATGAAACTATTGTATATCCTAATTTAGA CTTGGATAGCATAATTAAAAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111969:5..526+

>mRNA_M-pyrifera_M_contig111969.2508.1 ID=mRNA_M-pyrifera_M_contig111969.2508.1|Name=mRNA_M-pyrifera_M_contig111969.2508.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=942bp|location=Sequence derived from alignment at M-pyrifera_M_contig111969:5..526+ (Macrocystis pyrifera P11B4 male)
GATTTCAGAGGGTTTGCTCATTCTAAAGCATTTGATCATTTAGTTAGTGA
ATACGGCAATAATAATATCAAAGACTATAAGAAAAAGAAATTCCACCATG
CTTGGTGTCACGGTTCACCAGGTATAGTTCTGAGTCGAATTCCATACTAT
GTCCAAACAAATAATATAGAGAAGCTAAGCACTCTTTCTAGTTCTCTTGT
GAGAGCCTGCAAAATGAATCACATTAATTATTCTCCAACTATTTGCTGCG
GAATTGGTGGAATAATTTATAGTATGATAGAATTAAACGAAAAGTTGGAT
AAAAAAGGAATTCAAGCCATAGTTAATAGGATTTCAGAGGGTTTGCTCAT
TCTAAAGCATTTGATCATTTAGTTAGTGAATACGGCAATAATAATATCAA
AGACTATAAGAAAAAGAAATTCCACCATGCTTGGTGTCACGGTTCACCAG
GTATAGTTCTGAGTCGAATTCCATACTATGTCCAAACAAATAATATAGAG
AAGCTAAGCACTCTTTCTAGTTCTCTTGTGAGAGCCTGCAAAATGAATCA
CATTAATTATTCTCCAACTATTTGCTGCGGAATTGGTGGAATAATTTATA
GTATGATAGAATTAAACGAAAAGTTGGATAAAAAAGGAATTCAAGCCATA
GTTAATAGTGGTTGGGGAAGATCTCTAAAAGAAGAACCAAGTTTGTTCAA
GGGAATTGCCGGTGTCGGTATGTTAATGTTGAGATTTTATAAAAAATTAG
ATGAAACTATTGTATATCCTAATTTAGACTTGGATAGCATAATTAAAAAT
TGGTTGGGGAAGATCTCTAAAAGAAGAACCAAGTTTGTTCAAGGGAATTG
CCGGTGTCGGTATGTTAATGTTGAGATTTTATAAAAAATTAGATGAAACT
ATTGTATATCCTAATTTAGACTTGGATAGCATAATTAAAAAT
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