mRNA_M-pyrifera_M_contig111964.2505.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111964.2505.1
Unique NamemRNA_M-pyrifera_M_contig111964.2505.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111964.2505.1 vs. uniprot
Match: A0A7Y5C6L2_9BACT (Glycosyltransferase n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5C6L2_9BACT)

HSP 1 Score: 102 bits (255), Expect = 2.390e-23
Identity = 51/104 (49.04%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:    1 RTAIAARARDRALKDHTYDKRAQSMLDAIVDAFGSQIAASGIRAERTVNDMRDRVREKPALAEYLDAIPDETPFTLEGLDSHIGRFGEPWGDAEGIFAYLREMQ 312
            R AIAARAR+RAL++HTY  RAQ MLD +V+ F  +IA  G+RA+RTV+++ +RV     L  YL  +P +TPF    L+  I   G     AEG+FAYLRE++
Sbjct:  477 RKAIAARARERALREHTYAHRAQQMLDFVVERFADRIADKGVRAQRTVSEIIERVGAASPLGAYLATLPPDTPFAQAALNERIPLMGAKLSHAEGVFAYLRELR 580
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BLAST of mRNA_M-pyrifera_M_contig111964.2505.1 vs. uniprot
Match: A0A831U5J3_9BACT (DUF3880 domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A831U5J3_9BACT)

HSP 1 Score: 99.8 bits (247), Expect = 2.920e-22
Identity = 47/104 (45.19%), Postives = 66/104 (63.46%), Query Frame = 1 
Query:    1 RTAIAARARDRALKDHTYDKRAQSMLDAIVDAFGSQIAASGIRAERTVNDMRDRVREKPALAEYLDAIPDETPFTLEGLDSHIGRFGEPWGDAEGIFAYLREMQ 312
            R AIA RAR+R L DHTY++RAQ MLD IVD +G ++   G+R +RTV +M +RV     L +YL  +P +  FT E ++ H+ R G      E +F YLRE++
Sbjct:  479 RRAIAERARERVLCDHTYERRAQDMLDLIVDRYGPRVLRKGVRVQRTVAEMAERVGRDSPLGQYLGTLPPDLSFTHESINEHVARSGRAQSYPEKLFCYLREVR 582
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BLAST of mRNA_M-pyrifera_M_contig111964.2505.1 vs. uniprot
Match: A0A7C4UQT1_9BACT (DUF3880 domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C4UQT1_9BACT)

HSP 1 Score: 78.2 bits (191), Expect = 9.960e-15
Identity = 38/104 (36.54%), Postives = 62/104 (59.62%), Query Frame = 1 
Query:    1 RTAIAARARDRALKDHTYDKRAQSMLDAIVDAFGSQIAASGIRAERTVNDMRDRVREKPALAEYLDAIPDETPFTLEGLDSHIGRFGEPWGDAEGIFAYLREMQ 312
            R  IA +AR+RALK+HTY+ RAQ MLD I++ FG +I   G++  RT  ++R+ V +   L E+L  +P + PFT   +++++          E IF  + E++
Sbjct:  321 RKEIAKKARERALKEHTYEHRAQEMLDFIIENFGGKIMRKGVKIIRTTGEIREIVGKDSPLGEWLGKLPQDVPFTQHHINTYLKSLSSETPFPEKIFWLMNEIR 424
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BLAST of mRNA_M-pyrifera_M_contig111964.2505.1 vs. uniprot
Match: A0A7C3X272_9BACT (DUF3880 domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C3X272_9BACT)

HSP 1 Score: 73.2 bits (178), Expect = 6.380e-13
Identity = 37/104 (35.58%), Postives = 59/104 (56.73%), Query Frame = 1 
Query:    1 RTAIAARARDRALKDHTYDKRAQSMLDAIVDAFGSQIAASGIRAERTVNDMRDRVREKPALAEYLDAIPDETPFTLEGLDSHIGRFGEPWGDAEGIFAYLREMQ 312
            R  IA  A+ RALK+HTY+ RA  MLD I + FG +I   G+R +RTV ++ +R  +   L ++L  +P + PF  E ++ H+    +       +F YL E++
Sbjct:  481 RQQIAQNAQKRALKEHTYEHRANQMLDYIKEFFGGKIMRKGMRIQRTVGEIIERYGKNSPLGQWLATLPQDIPFLQEEINKHLPILDDNTPFPVQVFWYLNEVR 584
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BLAST of mRNA_M-pyrifera_M_contig111964.2505.1 vs. uniprot
Match: A0A3A5AR55_9DELT (DUF3880 domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3A5AR55_9DELT)

HSP 1 Score: 52.4 bits (124), Expect = 1.280e-5
Identity = 34/104 (32.69%), Postives = 49/104 (47.12%), Query Frame = 1 
Query:    1 RTAIAARARDRALKDHTYDKRAQSMLDAIVDAFGSQIAASGIRAERTVNDMRDRVREKPALAEYLDAIPDETPFTLEGLDSHIGRFGEPWGDAEGIFAYLREMQ 312
            R A+AA AR+R LK+HTY +R    L+ I D     +     R E     ++        +   LDA+P+  P  L+GL S I    EP  + E I  +L E +
Sbjct:  482 RRAMAAAARERVLKEHTYARRLAGALEIIQDLHPGVLPRRR-REEGAAPQLQSSFPADHPVQALLDALPEGAPPDLDGLVSRIKESEEPLTEPEAILWFLHEFR 584
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111964.2505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7Y5C6L2_9BACT2.390e-2349.04Glycosyltransferase n=1 Tax=Candidatus Hydrogenede... [more]
A0A831U5J3_9BACT2.920e-2245.19DUF3880 domain-containing protein n=1 Tax=Candidat... [more]
A0A7C4UQT1_9BACT9.960e-1536.54DUF3880 domain-containing protein n=1 Tax=Candidat... [more]
A0A7C3X272_9BACT6.380e-1335.58DUF3880 domain-containing protein n=1 Tax=Candidat... [more]
A0A3A5AR55_9DELT1.280e-532.69DUF3880 domain-containing protein n=1 Tax=Deltapro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111964contigM-pyrifera_M_contig111964:3..314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.315199-CDS-M-pyrifera_M_contig111964:2..3141622815633.315199-CDS-M-pyrifera_M_contig111964:2..314Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111964 3..314 +
1692277497.1454399-CDS-M-pyrifera_M_contig111964:2..3141692277497.1454399-CDS-M-pyrifera_M_contig111964:2..314Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111964 3..314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111964.2505.1prot_M-pyrifera_M_contig111964.2505.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111964 3..314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111964.2505.1

>prot_M-pyrifera_M_contig111964.2505.1 ID=prot_M-pyrifera_M_contig111964.2505.1|Name=mRNA_M-pyrifera_M_contig111964.2505.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
RTAIAARARDRALKDHTYDKRAQSMLDAIVDAFGSQIAASGIRAERTVND
MRDRVREKPALAEYLDAIPDETPFTLEGLDSHIGRFGEPWGDAEGIFAYL
REMQ
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mRNA from alignment at M-pyrifera_M_contig111964:3..314+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111964.2505.1 ID=mRNA_M-pyrifera_M_contig111964.2505.1|Name=mRNA_M-pyrifera_M_contig111964.2505.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig111964:3..314+ (Macrocystis pyrifera P11B4 male)
CGTACGGCAATCGCAGCGCGCGCGAGAGACCGTGCACTGAAAGATCACAC
CTACGACAAAAGGGCGCAATCCATGCTGGACGCGATCGTTGATGCGTTCG
GATCGCAAATCGCCGCGTCCGGCATTCGCGCGGAACGTACTGTAAATGAC
ATGCGTGATCGCGTGCGCGAAAAACCTGCGCTAGCTGAATACTTGGACGC
CATCCCCGACGAAACGCCATTCACGCTGGAAGGGTTGGATTCTCATATCG
GCCGTTTTGGCGAGCCTTGGGGCGACGCAGAAGGCATCTTCGCCTATCTC
CGCGAGATGCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111964:3..314+

>mRNA_M-pyrifera_M_contig111964.2505.1 ID=mRNA_M-pyrifera_M_contig111964.2505.1|Name=mRNA_M-pyrifera_M_contig111964.2505.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig111964:3..314+ (Macrocystis pyrifera P11B4 male)
CGTACGGCAATCGCAGCGCGCGCGAGAGACCGTGCACTGAAAGATCACAC
CTACGACAAAAGGGCGCAATCCATGCTGGACGCGATCGTTGATGCGTTCG
GATCGCAAATCGCCGCGTCCGGCATTCGCGCGGAACGTACTGTAAATGAC
ATGCGTGATCGCGTGCGCGAAAAACCTGCGCTAGCTGAATACTTGGACGC
CATCCCCGACGAAACGCCATTCACGCTGGAAGGGTTGGATTCTCATATCG
GCCGTTTTGGCGAGCCTTGGGGCGACGCAGAAGGCATCTTCGCCTATCTC
CGCGAGATGCAGCGTACGGCAATCGCAGCGCGCGCGAGAGACCGTGCACT
GAAAGATCACACCTACGACAAAAGGGCGCAATCCATGCTGGACGCGATCG
TTGATGCGTTCGGATCGCAAATCGCCGCGTCCGGCATTCGCGCGGAACGT
ACTGTAAATGACATGCGTGATCGCGTGCGCGAAAAACCTGCGCTAGCTGA
ATACTTGGACGCCATCCCCGACGAAACGCCATTCACGCTGGAAGGGTTGG
ATTCTCATATCGGCCGTTTTGGCGAGCCTTGGGGCGACGCAGAAGGCATC
TTCGCCTATCTCCGCGAGATGCAG
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