mRNA_M-pyrifera_M_contig111909.2486.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111909.2486.1
Unique NamemRNA_M-pyrifera_M_contig111909.2486.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111909.2486.1 vs. uniprot
Match: A0A1J5PY13_9ZZZZ (Amino acid kinase family protein n=1 Tax=mine drainage metagenome TaxID=410659 RepID=A0A1J5PY13_9ZZZZ)

HSP 1 Score: 57.4 bits (137), Expect = 8.920e-8
Identity = 36/95 (37.89%), Postives = 49/95 (51.58%), Query Frame = 1 
Query:    1 VLATSAIPADWTATSDSIAAWLGRHIGATGTVLVKSRHAASTGGPASALAAEAFIDTWLPHLVRGSEQPLWWLERSATREFVQLVAGAALPERAI 285
            VLA   IP +WT TSDS+AAWL R IGA   VLVK    +    P   L  +  +D+           P+  + ++A+  F   +AGA+ P RAI
Sbjct:  107 VLADRKIPTNWTVTSDSLAAWLARKIGADRLVLVKHAGCSEQPLPIDHLVEQGLLDSAFAEFSAPLTCPIQMIAKTASGAFADALAGASRPVRAI 201
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BLAST of mRNA_M-pyrifera_M_contig111909.2486.1 vs. uniprot
Match: A0A1A9NNZ7_9PROT (AA_kinase domain-containing protein n=1 Tax=Methylobacillus sp. MM3 TaxID=1848039 RepID=A0A1A9NNZ7_9PROT)

HSP 1 Score: 54.3 bits (129), Expect = 1.260e-6
Identity = 36/95 (37.89%), Postives = 42/95 (44.21%), Query Frame = 1 
Query:    1 VLATSAIPADWTATSDSIAAWLGRHIGATGTVLVKSRHAASTGGPASALAAEAFIDTWLPHLVRGSEQPLWWLERSATREFVQLVAGAALPERAI 285
            VLA   IP  W  TSDS+AAWL R IGA   VLVK         P   L     +D        G   P+  + +S   EF     G  +PERAI
Sbjct:  107 VLAEEGIPPSWDVTSDSLAAWLARKIGADRLVLVKHECVVEQPVPVHRLMDAGVLDAAFEKFASGLSCPIHIVGKSRYAEFAAAWVGGPIPERAI 201
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BLAST of mRNA_M-pyrifera_M_contig111909.2486.1 vs. uniprot
Match: UPI001A966140 (aspartate/glutamate/uridylate kinase n=1 Tax=Azospirillum sp. SYSU D00513 TaxID=2812561 RepID=UPI001A966140)

HSP 1 Score: 50.8 bits (120), Expect = 3.060e-5
Identity = 33/81 (40.74%), Postives = 41/81 (50.62%), Query Frame = 1 
Query:   19 IPADWTATSDSIAAWLGRHIGATGTVLVKSRHAASTGGPASALAAEAFIDTWLPHLVRGSEQPLWWLERSATREFVQLVAG 261
            +PA W  TSDSIAAWL R IGA   VLVKS        PA+ LA +  +D  LP  + G    ++ + R     F   V G
Sbjct:  129 LPASWDLTSDSIAAWLAREIGADRLVLVKSAGLPPGPVPAALLAGQGIVDPLLPDRMAGLSAGVFCVARDDLAGFGAAVDG 209
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BLAST of mRNA_M-pyrifera_M_contig111909.2486.1 vs. uniprot
Match: UPI000570C6F3 (aspartate kinase n=1 Tax=Bosea sp. 117 TaxID=1125973 RepID=UPI000570C6F3)

HSP 1 Score: 49.3 bits (116), Expect = 9.400e-5
Identity = 24/59 (40.68%), Postives = 33/59 (55.93%), Query Frame = 1 
Query:   19 IPADWTATSDSIAAWLGRHIGATGTVLVKSRHAASTGGPASALAAEAFIDTWLPHLVRG 195
            +PA W  TSDS+A WL + IGA    LVK+       GPA+  AA+  +D + P +  G
Sbjct:  125 VPASWEVTSDSLALWLAKEIGAARLTLVKAAPVEDPHGPAAGWAAKGLVDPYFPQIAAG 183
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111909.2486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A1J5PY13_9ZZZZ8.920e-837.89Amino acid kinase family protein n=1 Tax=mine drai... [more]
A0A1A9NNZ7_9PROT1.260e-637.89AA_kinase domain-containing protein n=1 Tax=Methyl... [more]
UPI001A9661403.060e-540.74aspartate/glutamate/uridylate kinase n=1 Tax=Azosp... [more]
UPI000570C6F39.400e-540.68aspartate kinase n=1 Tax=Bosea sp. 117 TaxID=11259... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111909contigM-pyrifera_M_contig111909:1..312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.362794-CDS-M-pyrifera_M_contig111909:0..3121622815632.362794-CDS-M-pyrifera_M_contig111909:0..312Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111909 1..312 +
1692277496.6727893-CDS-M-pyrifera_M_contig111909:0..3121692277496.6727893-CDS-M-pyrifera_M_contig111909:0..312Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111909 1..312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111909.2486.1prot_M-pyrifera_M_contig111909.2486.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111909 1..312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111909.2486.1

>prot_M-pyrifera_M_contig111909.2486.1 ID=prot_M-pyrifera_M_contig111909.2486.1|Name=mRNA_M-pyrifera_M_contig111909.2486.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
VLATSAIPADWTATSDSIAAWLGRHIGATGTVLVKSRHAASTGGPASALA
AEAFIDTWLPHLVRGSEQPLWWLERSATREFVQLVAGAALPERAITGSMR
PPG*
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mRNA from alignment at M-pyrifera_M_contig111909:1..312+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111909.2486.1 ID=mRNA_M-pyrifera_M_contig111909.2486.1|Name=mRNA_M-pyrifera_M_contig111909.2486.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig111909:1..312+ (Macrocystis pyrifera P11B4 male)
GTGCTCGCCACGAGCGCGATCCCCGCGGACTGGACGGCAACGTCGGACAG
CATCGCGGCCTGGTTGGGCCGGCACATCGGCGCCACCGGCACGGTGCTCG
TAAAATCCCGCCATGCGGCGAGTACCGGCGGCCCGGCGTCGGCGCTCGCG
GCCGAGGCATTCATCGACACGTGGCTGCCGCACCTCGTGCGCGGCAGCGA
GCAGCCGTTGTGGTGGCTCGAGCGATCGGCGACGCGCGAGTTCGTGCAGC
TCGTGGCGGGTGCTGCGTTACCGGAACGTGCGATTACGGGTTCGATGCGA
CCGCCGGGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111909:1..312+

>mRNA_M-pyrifera_M_contig111909.2486.1 ID=mRNA_M-pyrifera_M_contig111909.2486.1|Name=mRNA_M-pyrifera_M_contig111909.2486.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig111909:1..312+ (Macrocystis pyrifera P11B4 male)
GTGCTCGCCACGAGCGCGATCCCCGCGGACTGGACGGCAACGTCGGACAG
CATCGCGGCCTGGTTGGGCCGGCACATCGGCGCCACCGGCACGGTGCTCG
TAAAATCCCGCCATGCGGCGAGTACCGGCGGCCCGGCGTCGGCGCTCGCG
GCCGAGGCATTCATCGACACGTGGCTGCCGCACCTCGTGCGCGGCAGCGA
GCAGCCGTTGTGGTGGCTCGAGCGATCGGCGACGCGCGAGTTCGTGCAGC
TCGTGGCGGGTGCTGCGTTACCGGAACGTGCGATTACGGGTTCGATGCGA
CCGCCGGGGTGAGTGCTCGCCACGAGCGCGATCCCCGCGGACTGGACGGC
AACGTCGGACAGCATCGCGGCCTGGTTGGGCCGGCACATCGGCGCCACCG
GCACGGTGCTCGTAAAATCCCGCCATGCGGCGAGTACCGGCGGCCCGGCG
TCGGCGCTCGCGGCCGAGGCATTCATCGACACGTGGCTGCCGCACCTCGT
GCGCGGCAGCGAGCAGCCGTTGTGGTGGCTCGAGCGATCGGCGACGCGCG
AGTTCGTGCAGCTCGTGGCGGGTGCTGCGTTACCGGAACGTGCGATTACG
GGTTCGATGCGACCGCCGGGGTGA
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