mRNA_M-pyrifera_M_contig111773.2460.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111773.2460.1
Unique NamemRNA_M-pyrifera_M_contig111773.2460.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111773.2460.1 vs. uniprot
Match: A0A7S3H855_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H855_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 4.800e-7
Identity = 25/38 (65.79%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:   16 IVRIDNLVGFSGLTKLCLDNNKIETIENLDHLTKLTWL 129
            I RI+NLVGF  L KLCLDNN IE I N+ HL  L WL
Sbjct:   65 IGRIENLVGFDNLVKLCLDNNFIEEINNISHLVNLKWL 102
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BLAST of mRNA_M-pyrifera_M_contig111773.2460.1 vs. uniprot
Match: F0YL22_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL22_AURAN)

HSP 1 Score: 56.2 bits (134), Expect = 2.210e-6
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   13 DIVRIDNLVGFSGLTKLCLDNNKIETIENLDHLTKLTW 126
            +I++I NL GF  L KLCLDNN I++I+NLDHL  LTW
Sbjct:   14 NILKIGNLQGFQALRKLCLDNNIIKSIDNLDHLVNLTW 51
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BLAST of mRNA_M-pyrifera_M_contig111773.2460.1 vs. uniprot
Match: A0A7S3ZLM5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZLM5_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.040e-5
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:   13 DIVRIDNLVGFSGLTKLCLDNNKIETIENLDHLTKLTWL 129
            +++ IDNL GF  L  LCLDNN I+ ++NLDHL  LTWL
Sbjct:   49 NVLEIDNLQGFHALRTLCLDNNIIKCMKNLDHLVNLTWL 87
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BLAST of mRNA_M-pyrifera_M_contig111773.2460.1 vs. uniprot
Match: A0A8E0RQN6_9TREM (Leucine-rich repeat-containing protein 48 n=1 Tax=Fasciolopsis buski TaxID=27845 RepID=A0A8E0RQN6_9TREM)

HSP 1 Score: 52.4 bits (124), Expect = 4.580e-5
Identity = 27/43 (62.79%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:   13 DIVRIDNLVGFSGLTKLCLDNNKIETIENLDHLTKLTWLGAKA 141
            +I+RI NL  F  LTKL LDNN IE IENL+ L  LTWLG  A
Sbjct:   82 NILRISNLDDFVSLTKLQLDNNIIEKIENLEGLVNLTWLGNPA 124
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BLAST of mRNA_M-pyrifera_M_contig111773.2460.1 vs. uniprot
Match: X6N9U4_RETFI (Flagellar associated protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6N9U4_RETFI)

HSP 1 Score: 52.0 bits (123), Expect = 6.340e-5
Identity = 37/132 (28.03%), Postives = 52/132 (39.39%), Query Frame = 1 
Query:   40 GFSGLTKLCLDNNKIETIENLDHLTKLTWLGAKAHVRGSAGGTAHSRAALRRPVLQPHQVHFWPVRAAAPHGLVAAPQPNHRGGRADQMHQVLGLTRLPVLESVSLAGNPFAAEADYRGNVMAFLQTIQSLD 435
            GF  L KL LDNNKIETIENL+HL  L WL                                                          +  +L L +LP LE+++L GNP  + +D++  V+A+   ++ LD
Sbjct:    1 GFENLIKLQLDNNKIETIENLEHLINLEWLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----XXXXXXXLDDILYLRQLPNLEALNLKGNPVHSGSDFKNYVLAYCSRLKFLD 127
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BLAST of mRNA_M-pyrifera_M_contig111773.2460.1 vs. uniprot
Match: A0A183X2F6_TRIRE (Uncharacterized protein n=1 Tax=Trichobilharzia regenti TaxID=157069 RepID=A0A183X2F6_TRIRE)

HSP 1 Score: 50.8 bits (120), Expect = 8.160e-5
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   13 DIVRIDNLVGFSGLTKLCLDNNKIETIENLDHLTKLTWLG 132
            +I++IDNL  F  L KL LDNN IE IE +DHL+ L WLG
Sbjct:   54 NILKIDNLWSFKLLVKLQLDNNIIERIEGIDHLSHLRWLG 93
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111773.2460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S3H855_9STRA4.800e-765.79Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
F0YL22_AURAN2.210e-663.16Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3ZLM5_9STRA1.040e-558.97Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8E0RQN6_9TREM4.580e-562.79Leucine-rich repeat-containing protein 48 n=1 Tax=... [more]
X6N9U4_RETFI6.340e-528.03Flagellar associated protein (Fragment) n=1 Tax=Re... [more]
A0A183X2F6_TRIRE8.160e-560.00Uncharacterized protein n=1 Tax=Trichobilharzia re... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111773contigM-pyrifera_M_contig111773:7..563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size447
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.0993152-CDS-M-pyrifera_M_contig111773:6..1411622815631.0993152-CDS-M-pyrifera_M_contig111773:6..141Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111773 7..141 -
1692277496.1064012-CDS-M-pyrifera_M_contig111773:6..1411692277496.1064012-CDS-M-pyrifera_M_contig111773:6..141Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111773 7..141 -
1622815631.1126256-CDS-M-pyrifera_M_contig111773:251..5631622815631.1126256-CDS-M-pyrifera_M_contig111773:251..563Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111773 252..563 -
1692277496.1249473-CDS-M-pyrifera_M_contig111773:251..5631692277496.1249473-CDS-M-pyrifera_M_contig111773:251..563Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111773 252..563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111773.2460.1prot_M-pyrifera_M_contig111773.2460.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111773 7..563 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111773.2460.1

>prot_M-pyrifera_M_contig111773.2460.1 ID=prot_M-pyrifera_M_contig111773.2460.1|Name=mRNA_M-pyrifera_M_contig111773.2460.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
LCPADIVRIDNLVGFSGLTKLCLDNNKIETIENLDHLTKLTWLGAKAHVR
GSAGGTAHSRAALRRPVLQPHQVHFWPVRAAAPHGLVAAPQPNHRGGRAD
QMHQVLGLTRLPVLESVSLAGNPFAAEADYRGNVMAFLQTIQSLDSRLF
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mRNA from alignment at M-pyrifera_M_contig111773:7..563-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111773.2460.1 ID=mRNA_M-pyrifera_M_contig111773.2460.1|Name=mRNA_M-pyrifera_M_contig111773.2460.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=557bp|location=Sequence derived from alignment at M-pyrifera_M_contig111773:7..563- (Macrocystis pyrifera P11B4 male)
CTGTGCCCCGCAGACATTGTTCGAATCGACAACCTGGTGGGCTTCTCCGG
CTTGACCAAGCTGTGTCTGGACAACAACAAGATCGAGACGATCGAGAACT
TGGACCACTTGACCAAGCTCACGTGGCTTGGTGCGAAGGCTCACGTGCGT
GGCAGTGCGGGGGGTACAGCACACTCACGCGCAGCGTTGCGCAGACCTGT
CCTTCAACCGCATCAAGTCCATTTCTGGCCTGTCCGCGCTGCAGCGCCTC
ACGGACTTGTCGCTGCACCACAACCAAATCACAGAGGTGGAAGGGCTGAC
CAGATGCACCAAGTTGCAGTGCCTGTCGTTGGGCAGCAACGCGATTGAGG
ACAAGAAGCAGGTATGTCGCGTGCGGAGGCAGGCGGCCAAGCTTCGTCGC
TGACCCGCTGTGACAATCGCAGGTGCTTGGTTTGACGAGACTGCCCGTGC
TGGAGAGCGTGTCGCTAGCTGGAAACCCATTCGCAGCCGAGGCTGACTAT
CGCGGCAATGTAATGGCCTTCCTCCAGACGATCCAGTCCTTGGACTCCCG
GTTGTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111773:7..563-

>mRNA_M-pyrifera_M_contig111773.2460.1 ID=mRNA_M-pyrifera_M_contig111773.2460.1|Name=mRNA_M-pyrifera_M_contig111773.2460.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig111773:7..563- (Macrocystis pyrifera P11B4 male)
CTGTGCCCCGCAGACATTGTTCGAATCGACAACCTGGTGGGCTTCTCCGG
CTTGACCAAGCTGTGTCTGGACAACAACAAGATCGAGACGATCGAGAACT
TGGACCACTTGACCAAGCTCACGTGGCTTGGTGCGAAGGCTCACGTGCGT
GGCAGTGCGGGGGGTACAGCACACTCACGCGCAGCGTTGCGCAGACCTGT
CCTTCAACCGCATCAAGTCCATTTCTGGCCTGTCCGCGCTGCAGCGCCTC
ACGGACTTGTCGCTGCACCACAACCAAATCACAGAGGTGGAAGGGCTGAC
CAGATGCACCAACTGTGCCCCGCAGACATTGTTCGAATCGACAACCTGGT
GGGCTTCTCCGGCTTGACCAAGCTGTGTCTGGACAACAACAAGATCGAGA
CGATCGAGAACTTGGACCACTTGACCAAGCTCACGTGGCTTGGTGCGAAG
GCTCACGTGCGTGGCAGTGCGGGGGGTACAGCACACTCACGCGCAGCGTT
GCGCAGACCTGTCCTTCAACCGCATCAAGTCCATTTCTGGCCTGTCCGCG
CTGCAGCGCCTCACGGACTTGTCGCTGCACCACAACCAAATCACAGAGGT
GGAAGGGCTGACCAGATGCACCAAGTGCTTGGTTTGACGAGACTGCCCGT
GCTGGAGAGCGTGTCGCTAGCTGGAAACCCATTCGCAGCCGAGGCTGACT
ATCGCGGCAATGTAATGGCCTTCCTCCAGACGATCCAGTCCTTGGACTCC
CGGTTGTTCGTGCTTGGTTTGACGAGACTGCCCGTGCTGGAGAGCGTGTC
GCTAGCTGGAAACCCATTCGCAGCCGAGGCTGACTATCGCGGCAATGTAA
TGGCCTTCCTCCAGACGATCCAGTCCTTGGACTCCCGGTTGTTC
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