mRNA_M-pyrifera_M_contig1117.2442.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig1117.2442.1 vs. uniprot
Match: D7FM69_ECTSI (Ribosomal_S10 domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=D7FM69_ECTSI) HSP 1 Score: 221 bits (562), Expect = 3.390e-72 Identity = 113/119 (94.96%), Postives = 115/119 (96.64%), Query Frame = 3
Query: 75 MSGYAKVKGHGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVDKELKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADA 431
MS Y K KG GQEEARVHRIRITLTSKNVKNLEKVCADLKKGAV+K+LKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADA
Sbjct: 1 MSAYVKGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADA 119
BLAST of mRNA_M-pyrifera_M_contig1117.2442.1 vs. uniprot
Match: A0A397FH44_9STRA (Ribosomal_S10 domain-containing protein n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A397FH44_9STRA) HSP 1 Score: 196 bits (499), Expect = 2.510e-62 Identity = 98/114 (85.96%), Postives = 106/114 (92.98%), Query Frame = 3
Query: 90 KVKGHGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVDKELKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADA 431
K G EE+R+HRIRITLTS+NVKNLEKVCADLKKGAVDK LKVSGPVRLPTK L++ TRKSPCGEGTNTWDRFEMRIHKRI+DLHSPSEIVK+ITSISIEPGVEVEVTIAD+
Sbjct: 26 KPTGFEGEESRIHRIRITLTSRNVKNLEKVCADLKKGAVDKNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHSPSEIVKQITSISIEPGVEVEVTIADS 139
BLAST of mRNA_M-pyrifera_M_contig1117.2442.1 vs. uniprot
Match: A0A835YYK1_9STRA (Ribosomal protein S10 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYK1_9STRA) HSP 1 Score: 194 bits (493), Expect = 1.080e-61 Identity = 98/119 (82.35%), Postives = 107/119 (89.92%), Query Frame = 3
Query: 75 MSGYAKVKGHGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVDKELKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADA 431
MS + K K EE+RVHRIRITLTS+NVKNLEKVCADLK GAV +LKVSGPVRLPT+KLKIVTRKSPCG GTNT+DRFEMRIHKRI+DLHSPSEIVK+ITSISIEPGVEVEVTI D+
Sbjct: 1 MSSFTKTKDIASEESRVHRIRITLTSRNVKNLEKVCADLKSGAVKHQLKVSGPVRLPTRKLKIVTRKSPCGNGTNTFDRFEMRIHKRIIDLHSPSEIVKQITSISIEPGVEVEVTIKDS 119
BLAST of mRNA_M-pyrifera_M_contig1117.2442.1 vs. uniprot
Match: A0A329RI77_9STRA (Ribosomal_S10 domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=A0A329RI77_9STRA) HSP 1 Score: 194 bits (494), Expect = 3.360e-61 Identity = 103/133 (77.44%), Postives = 113/133 (84.96%), Query Frame = 3
Query: 39 RPLSFVSQSP--STMSGYAKVKGHGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVDKELKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADA 431
R LS S P S MS K K EE R+HRIRITLTS+NVKNLEKVCADLK+GAVDK LKVSGPVRLPTK L++ TRKSPCGEGTNTWDRFEMRIHKRI+DLH+PS+IVK+ITSISIEPGVEVEVTIAD+
Sbjct: 33 RLLSVQSYCPLSSIMSLVNKPKTVEAEETRIHRIRITLTSRNVKNLEKVCADLKRGAVDKNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIADS 165
BLAST of mRNA_M-pyrifera_M_contig1117.2442.1 vs. uniprot
Match: G4YYZ2_PHYSP (Ribosomal_S10 domain-containing protein n=7 Tax=Oomycota TaxID=4762 RepID=G4YYZ2_PHYSP) HSP 1 Score: 191 bits (484), Expect = 2.530e-60 Identity = 96/119 (80.67%), Postives = 107/119 (89.92%), Query Frame = 3
Query: 75 MSGYAKVKGHGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVDKELKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADA 431
MS K K EE R+HRIRITL+S+NVKNLEKVCADLK+GAVDK LKVSGPVRLPTK L++ TRKSPCGEGTNTWDRFEMRIHKRI+DLH+PS+IVK+ITSISIEPGVEVEVTIAD+
Sbjct: 1 MSLVNKPKTVEAEETRIHRIRITLSSRNVKNLEKVCADLKRGAVDKNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIADS 119
BLAST of mRNA_M-pyrifera_M_contig1117.2442.1 vs. uniprot
Match: H3GAS8_PHYRM (Ribosomal_S10 domain-containing protein n=9 Tax=Eukaryota TaxID=2759 RepID=H3GAS8_PHYRM) HSP 1 Score: 191 bits (484), Expect = 2.530e-60 Identity = 96/119 (80.67%), Postives = 107/119 (89.92%), Query Frame = 3
Query: 75 MSGYAKVKGHGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVDKELKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADA 431
MS K K EE R+HRIRITL+S+NVKNLEKVCADLK+GAVDK LKVSGPVRLPTK L++ TRKSPCGEGTNTWDRFEMRIHKRI+DLH+PS+IVK+ITSISIEPGVEVEVTIAD+
Sbjct: 1 MSLVNKQKTVEAEETRIHRIRITLSSRNVKNLEKVCADLKRGAVDKNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIADS 119
BLAST of mRNA_M-pyrifera_M_contig1117.2442.1 vs. uniprot
Match: A0A421F2P5_9STRA (Ribosomal_S10 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421F2P5_9STRA) HSP 1 Score: 190 bits (483), Expect = 9.760e-60 Identity = 95/125 (76.00%), Postives = 108/125 (86.40%), Query Frame = 3
Query: 57 SQSPSTMSGYAKVKGHGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVDKELKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADA 431
S P + K K EE R+HRIRITL+S+NVKNLEKVCADLK+GAVDK LKV+GPVRLPTK L++ TRKSPCGEGTNTWDRFEMRIHKRI+DLH+PS+IVK+ITSISIEPGVEVEVTIAD+
Sbjct: 26 SNCPLSTMSLNKPKTVEAEETRIHRIRITLSSRNVKNLEKVCADLKRGAVDKNLKVAGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIADS 150
BLAST of mRNA_M-pyrifera_M_contig1117.2442.1 vs. uniprot
Match: A0A6U5GMR1_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5GMR1_9STRA) HSP 1 Score: 188 bits (477), Expect = 3.240e-59 Identity = 95/120 (79.17%), Postives = 108/120 (90.00%), Query Frame = 3
Query: 78 SGYAKVKGHG---QEEARVHRIRITLTSKNVKNLEKVCADLKKGAVDKELKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIAD 428
SGY K G + +A+VHRIRITLTS+NVKNLEKVCADLK+GA+DK+LKVSGPVRLPTKKL I TRK+P GEGTNTWDRFEMRIHKR++DLHSP+EIVK+ITSISIEPGVEVEVT+AD
Sbjct: 3 SGYPPKKELGGIVEADAKVHRIRITLTSRNVKNLEKVCADLKRGALDKKLKVSGPVRLPTKKLTITTRKAPSGEGTNTWDRFEMRIHKRLIDLHSPAEIVKQITSISIEPGVEVEVTVAD 122
BLAST of mRNA_M-pyrifera_M_contig1117.2442.1 vs. uniprot
Match: A0A3B4WLA1_SERLL (40S ribosomal protein S20 n=3 Tax=Eukaryota TaxID=2759 RepID=A0A3B4WLA1_SERLL) HSP 1 Score: 184 bits (466), Expect = 1.540e-57 Identity = 91/103 (88.35%), Postives = 97/103 (94.17%), Query Frame = 3
Query: 120 RVHRIRITLTSKNVKNLEKVCADLKKGAVDKELKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIAD 428
+VHRIRITLTS+NVKNLEKVCADL KGA DK LKV GPVRLPTK L+I TRKSPCGEGTNTWDRFEMRIHKR++DLHSPSEIVK+ITSISIEPGVEVEVTIAD
Sbjct: 19 KVHRIRITLTSRNVKNLEKVCADLIKGAKDKRLKVKGPVRLPTKTLRITTRKSPCGEGTNTWDRFEMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 121
BLAST of mRNA_M-pyrifera_M_contig1117.2442.1 vs. uniprot
Match: A0A7S0INE6_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0INE6_9EUKA) HSP 1 Score: 185 bits (469), Expect = 1.700e-57 Identity = 98/133 (73.68%), Postives = 110/133 (82.71%), Query Frame = 3
Query: 36 VRPLSFVSQSPSTMSGYAKVKGHGQEEA--RVHRIRITLTSKNVKNLEKVCADLKKGAVDKELKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIAD 428
V ++ V P + K K H +EEA +VHRIRITLTS+NVKNLEKVCADL +GA +K LKV GPVRLPTK L+I TRKSPCGEGTNTWDRFEMRIHKR++DLHSPSEIVK+ITSISIEPGVEVEVTIAD
Sbjct: 26 VATMAAVDTMPPVDASAMKAK-HIEEEAAVKVHRIRITLTSRNVKNLEKVCADLIRGAKEKRLKVKGPVRLPTKVLRITTRKSPCGEGTNTWDRFEMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 157 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1117.2442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig1117.2442.1 >prot_M-pyrifera_M_contig1117.2442.1 ID=prot_M-pyrifera_M_contig1117.2442.1|Name=mRNA_M-pyrifera_M_contig1117.2442.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp MSGYAKVKGHGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVDKELKVback to top mRNA from alignment at M-pyrifera_M_contig1117:204..1973+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig1117.2442.1 ID=mRNA_M-pyrifera_M_contig1117.2442.1|Name=mRNA_M-pyrifera_M_contig1117.2442.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1770bp|location=Sequence derived from alignment at M-pyrifera_M_contig1117:204..1973+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig1117:204..1973+ >mRNA_M-pyrifera_M_contig1117.2442.1 ID=mRNA_M-pyrifera_M_contig1117.2442.1|Name=mRNA_M-pyrifera_M_contig1117.2442.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig1117:204..1973+ (Macrocystis pyrifera P11B4 male)back to top |