mRNA_M-pyrifera_M_contig111651.2428.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111651.2428.1
Unique NamemRNA_M-pyrifera_M_contig111651.2428.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111651.2428.1 vs. uniprot
Match: F0YCT9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCT9_AURAN)

HSP 1 Score: 55.5 bits (132), Expect = 1.330e-7
Identity = 22/52 (42.31%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:    1 WAVTNASAVERIDKVLADNVPEIAMFR--FLGTNHWPESFWWPQMARFKAAP 150
            W     S   R+D+++ADNVPE+AMFR  ++G  H P ++WWP + +F  +P
Sbjct:  651 WTTLEESGAPRVDRMIADNVPEMAMFRLMWIGGAHQPAAWWWPLLDKFATSP 702
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111651.2428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
F0YCT9_AURAN1.330e-742.31Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111651contigM-pyrifera_M_contig111651:429..581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815629.251799-CDS-M-pyrifera_M_contig111651:428..5811622815629.251799-CDS-M-pyrifera_M_contig111651:428..581Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111651 429..581 -
1692277495.236257-CDS-M-pyrifera_M_contig111651:428..5811692277495.236257-CDS-M-pyrifera_M_contig111651:428..581Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111651 429..581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111651.2428.1prot_M-pyrifera_M_contig111651.2428.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111651 429..581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111651.2428.1

>prot_M-pyrifera_M_contig111651.2428.1 ID=prot_M-pyrifera_M_contig111651.2428.1|Name=mRNA_M-pyrifera_M_contig111651.2428.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=51bp
WAVTNASAVERIDKVLADNVPEIAMFRFLGTNHWPESFWWPQMARFKAAP
*
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mRNA from alignment at M-pyrifera_M_contig111651:429..581-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111651.2428.1 ID=mRNA_M-pyrifera_M_contig111651.2428.1|Name=mRNA_M-pyrifera_M_contig111651.2428.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=153bp|location=Sequence derived from alignment at M-pyrifera_M_contig111651:429..581- (Macrocystis pyrifera P11B4 male)
TGGGCTGTTACGAATGCGTCTGCAGTGGAACGCATCGACAAAGTTCTCGC
AGACAATGTCCCAGAAATCGCAATGTTCCGCTTCCTTGGCACCAATCATT
GGCCAGAATCTTTTTGGTGGCCCCAGATGGCCCGCTTCAAAGCAGCGCCT
TGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111651:429..581-

>mRNA_M-pyrifera_M_contig111651.2428.1 ID=mRNA_M-pyrifera_M_contig111651.2428.1|Name=mRNA_M-pyrifera_M_contig111651.2428.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig111651:429..581- (Macrocystis pyrifera P11B4 male)
TGGGCTGTTACGAATGCGTCTGCAGTGGAACGCATCGACAAAGTTCTCGC
AGACAATGTCCCAGAAATCGCAATGTTCCGCTTCCTTGGCACCAATCATT
GGCCAGAATCTTTTTGGTGGCCCCAGATGGCCCGCTTCAAAGCAGCGCCT
TGATGGGCTGTTACGAATGCGTCTGCAGTGGAACGCATCGACAAAGTTCT
CGCAGACAATGTCCCAGAAATCGCAATGTTCCGCTTCCTTGGCACCAATC
ATTGGCCAGAATCTTTTTGGTGGCCCCAGATGGCCCGCTTCAAAGCAGCG
CCTTGA
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