mRNA_M-pyrifera_M_contig111613.2412.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111613.2412.1
Unique NamemRNA_M-pyrifera_M_contig111613.2412.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111613.2412.1 vs. uniprot
Match: UPI001CF4B371 (LOW QUALITY PROTEIN: uncharacterized protein LOC114962101 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF4B371)

HSP 1 Score: 99.8 bits (247), Expect = 7.610e-22
Identity = 51/120 (42.50%), Postives = 69/120 (57.50%), Query Frame = 1
Query:    1 QLVPRKQMAALKQLELLMDPQGNYKAYRETMKTTKLPAVPYVGIYLKDATFIDEGNKDFLESGAANFEKMRMKAALISSIEFFQLRAYKFGQDEEIKAYLQTVAVMDEKTAYKHSLQCEP 360
            +LVP++ +    ++E+LMD + NYK YR+ + T+  P+VPY GIY+KD TFI EGN DF + G  N  K R    +I  I  FQ   Y F +  EI+ YL    +  EK  Y  S Q EP
Sbjct: 2158 ELVPKEYLEQYAKMEILMDTKDNYKRYRQALATSPTPSVPYFGIYMKDLTFIAEGNPDFFKGGLINLTKRRQIYLVIDEIRRFQKDVYNFQEVSEIRDYLANEKIHTEKELYDISCQFEP 2277          
BLAST of mRNA_M-pyrifera_M_contig111613.2412.1 vs. uniprot
Match: A0A6P8IBY3_ACTTE (uncharacterized protein LOC116298715 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IBY3_ACTTE)

HSP 1 Score: 99.4 bits (246), Expect = 1.040e-21
Identity = 47/120 (39.17%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    1 QLVPRKQMAALKQLELLMDPQGNYKAYRETMKTTKLPAVPYVGIYLKDATFIDEGNKDFLESGAANFEKMRMKAALISSIEFFQLRAYKFGQDEEIKAYLQTVAVMDEKTAYKHSLQCEP 360
            + VP++ +    ++E+LMD + NYK YR T++++  P +PY GIY+KD TFI EGN DFL+ G  N  K R+   +++ I  FQ ++Y F +  EI+ +L    +M E   Y  S + EP
Sbjct: 2002 EFVPKEFLEQFSKIEMLMDAKDNYKRYRSTLRSSPTPTIPYFGIYMKDLTFIAEGNADFLKGGLVNLNKRRLIYLVVNDIRKFQKKSYNFQEVTEIREFLLDHKIMTEDDLYLISRELEP 2121          
BLAST of mRNA_M-pyrifera_M_contig111613.2412.1 vs. uniprot
Match: UPI0009A3A360 (LOW QUALITY PROTEIN: ras-specific guanine nucleotide-releasing factor 1-like n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A3A360)

HSP 1 Score: 93.6 bits (231), Expect = 1.850e-21
Identity = 49/122 (40.16%), Postives = 73/122 (59.84%), Query Frame = 1
Query:    7 VPRKQMAALKQLELLMDPQGNYKAYRETMKTTKLPAVPYVGIYLKDATFIDEGNKDFLESGAANFEKMRMKAALISSIEFFQLRAYKFGQDEEIKAYLQTVA-VMDEKTAYKHSLQCEPRTM 369
            V ++  A + +L+ L+  +G +K  RE +K    P VPY+G+YL D  FI+EG  ++ E G  NF KMRM + +I  I  FQ  AYK  Q  ++  YL   + VMDE+T Y+ SL+ EP+ +
Sbjct:   63 VSKQTKALIDKLQKLVSSEGRFKNLREALKNCDPPCVPYLGMYLTDLAFIEEGTPNYTEDGLVNFSKMRMISHIIREIRQFQQTAYKIEQQTKVARYLLVRSNVMDEETLYEASLRIEPKLL 184          
BLAST of mRNA_M-pyrifera_M_contig111613.2412.1 vs. uniprot
Match: A0A3M6U921_POCDA (Uncharacterized protein n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6U921_POCDA)

HSP 1 Score: 97.1 bits (240), Expect = 6.690e-21
Identity = 49/120 (40.83%), Postives = 69/120 (57.50%), Query Frame = 1
Query:    1 QLVPRKQMAALKQLELLMDPQGNYKAYRETMKTTKLPAVPYVGIYLKDATFIDEGNKDFLESGAANFEKMRMKAALISSIEFFQLRAYKFGQDEEIKAYLQTVAVMDEKTAYKHSLQCEP 360
            +LVP++ +    ++E+LMD + NYK YR+ + ++  P+VPY G+Y+KD TFI EGN DF + G  N  K R    +I  I  FQ   Y F +  EI+ YL    +  EK  Y  S Q EP
Sbjct: 2153 ELVPKEVLEQYAKMEILMDTKDNYKRYRQALGSSPTPSVPYFGVYMKDLTFIAEGNPDFFKGGLINLTKRRQIYLVIDEIRRFQKDVYNFQEVSEIRDYLANEKIHTEKELYDISCQFEP 2272          
BLAST of mRNA_M-pyrifera_M_contig111613.2412.1 vs. uniprot
Match: A0A2B4RY11_STYPI (Ras guanine nucleotide exchange factor J n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RY11_STYPI)

HSP 1 Score: 97.1 bits (240), Expect = 6.690e-21
Identity = 49/120 (40.83%), Postives = 69/120 (57.50%), Query Frame = 1
Query:    1 QLVPRKQMAALKQLELLMDPQGNYKAYRETMKTTKLPAVPYVGIYLKDATFIDEGNKDFLESGAANFEKMRMKAALISSIEFFQLRAYKFGQDEEIKAYLQTVAVMDEKTAYKHSLQCEP 360
            +LVP++ +    ++E+LMD + NYK YR+ + ++  P+VPY G+Y+KD TFI EGN DF + G  N  K R    +I  I  FQ   Y F +  EI+ YL    +  EK  Y  S Q EP
Sbjct: 2176 ELVPKEVLEQYAKMEILMDTKDNYKRYRQALGSSPTPSVPYFGVYMKDLTFIAEGNPDFFKGGLINLTKRRQIYLVIDEIRRFQKDVYNFQEVSEIRDYLANEKIHTEKELYDISCQFEP 2295          
BLAST of mRNA_M-pyrifera_M_contig111613.2412.1 vs. uniprot
Match: UPI0009E2DD0D (uncharacterized protein LOC110060183 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E2DD0D)

HSP 1 Score: 96.7 bits (239), Expect = 9.120e-21
Identity = 50/120 (41.67%), Postives = 68/120 (56.67%), Query Frame = 1
Query:    1 QLVPRKQMAALKQLELLMDPQGNYKAYRETMKTTKLPAVPYVGIYLKDATFIDEGNKDFLESGAANFEKMRMKAALISSIEFFQLRAYKFGQDEEIKAYLQTVAVMDEKTAYKHSLQCEP 360
            +LVP+  +    ++E+LMD + NYK YR+ + ++  P+VPY GIY+KD TFI EGN DF + G  N  K R    +I  I  FQ   Y F +  EI+ YL    +  EK  Y  S Q EP
Sbjct: 2168 ELVPKDFLEQYAKMEILMDTKDNYKRYRQALASSPTPSVPYFGIYMKDLTFIAEGNPDFFKGGLINLTKRRQIYLVIDEIRRFQKDVYNFQEVSEIRDYLANEKIHTEKELYDISCQFEP 2287          
BLAST of mRNA_M-pyrifera_M_contig111613.2412.1 vs. uniprot
Match: G3I7B6_CRIGR (Ras-specific guanine nucleotide-releasing factor 2 (Fragment) n=1 Tax=Cricetulus griseus TaxID=10029 RepID=G3I7B6_CRIGR)

HSP 1 Score: 94.0 bits (232), Expect = 1.010e-20
Identity = 50/120 (41.67%), Postives = 72/120 (60.00%), Query Frame = 1
Query:    7 VPRKQMAALKQLELLMDPQGNYKAYRETMKTTKLPAVPYVGIYLKDATFIDEGNKDFLESGAANFEKMRMKAALISSIEFFQLRAYKFGQDEEIKAYLQTVA-VMDEKTAYKHSLQCEPR 363
            V ++  A + +L+  +  +G +K  RET+K    PAVPY+G+YL D  FI+EG  +F E G  NF KMRM + +I  I  FQ  AY+  Q  ++  YL   A ++DE T Y+ SL+ EPR
Sbjct:  165 VSKQTKALMDKLQKTVSSEGRFKNLRETLKNCNPPAVPYLGMYLTDLAFIEEGTPNFTEEGLVNFSKMRMISHIIREIRQFQQTAYRIDQQPKVIQYLLDKALIIDEDTLYELSLKIEPR 284          
BLAST of mRNA_M-pyrifera_M_contig111613.2412.1 vs. uniprot
Match: F4PV26_CAVFA (RasGEF domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PV26_CAVFA)

HSP 1 Score: 96.3 bits (238), Expect = 1.180e-20
Identity = 51/121 (42.15%), Postives = 73/121 (60.33%), Query Frame = 1
Query:    4 LVPRKQMAALKQLELLMDPQGNYKAYRETMKTTKLPAVPYVGIYLKDATFIDEGNKDFLESGAANFEKMRMKAALISSIEFFQLRAYKFGQ-DEEIKAYLQTVAVMDEKTAYKHSLQCEPR 363
            LVP       +QL+ L+ P+G++K YRE +K T    +PY+GIYL D TFI+EGN D+ E    N+ K+R  AA I SI+ FQ   + +    E+I++ L    +MD +T +K SL CE R
Sbjct:  768 LVPVSSKETFQQLQKLLSPKGSFKEYRERLKQTTSACIPYLGIYLSDLTFIEEGNPDYREDTLINYTKLREIAATILSIQQFQNTLHYYQPIKEKIRSQLDLKCIMDNETIWKMSLSCEAR 888          
BLAST of mRNA_M-pyrifera_M_contig111613.2412.1 vs. uniprot
Match: A0A3P4RME2_GULGU (Ras-GEF domain-containing protein n=2 Tax=Caniformia TaxID=379584 RepID=A0A3P4RME2_GULGU)

HSP 1 Score: 89.4 bits (220), Expect = 1.390e-20
Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = 1
Query:   40 LELLMDPQGNYKAYRETMKTTKLPAVPYVGIYLKDATFIDEGNKDFLESGAANFEKMRMKAALISSIEFFQLRAYKFGQDEEIKAYLQTVA-VMDEKTAYKHSLQCEPR 363
            L+  +  +G +K  RET+K    PAVPY+G+YL D  FI+EG  +F E G  NF KMRM + +I  I  FQ   Y+     ++  YL   A ++DE T Y+ SL+ EPR
Sbjct:    4 LQKTVSSEGRFKNLRETLKNCNPPAVPYLGMYLTDLAFIEEGTPNFTEEGLVNFSKMRMISHIIREIRQFQQTCYRIDHQPKVTQYLLDKALIIDEDTLYELSLKIEPR 112          
BLAST of mRNA_M-pyrifera_M_contig111613.2412.1 vs. uniprot
Match: A0A7S4UB36_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4UB36_9EUKA)

HSP 1 Score: 94.4 bits (233), Expect = 1.640e-20
Identity = 47/123 (38.21%), Postives = 78/123 (63.41%), Query Frame = 1
Query:    4 LVPRKQMAALKQLELLMDPQGNYKAYRETMKTTKLPAVPYVGIYLKDATFIDEGNKDFLESGAANFEKMRMKAALISSIEFFQLRAYKFGQDEEIKAYLQ---TVAVMDEKTAYKHSLQCEPR 363
            LV ++++A+L++L   +  + +YK YRET+ + + P +PY+G+YL D TF+++GNKD  ++   NF K  M + +I  I+ +Q   Y     EEI+ YL+   T  V+ E   Y++SL+CEPR
Sbjct:  220 LVSKRKIASLQKLGSCLARESSYKVYRETLHSRQPPIIPYIGVYLSDLTFLEDGNKDRTDNDHVNFHKRIMISNVIKEIKQYQQMPYNIVDVEEIQKYLEEMTTRMVLSENQIYEYSLKCEPR 342          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111613.2412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001CF4B3717.610e-2242.50LOW QUALITY PROTEIN: uncharacterized protein LOC11... [more]
A0A6P8IBY3_ACTTE1.040e-2139.17uncharacterized protein LOC116298715 n=1 Tax=Actin... [more]
UPI0009A3A3601.850e-2140.16LOW QUALITY PROTEIN: ras-specific guanine nucleoti... [more]
A0A3M6U921_POCDA6.690e-2140.83Uncharacterized protein n=2 Tax=Pocillopora damico... [more]
A0A2B4RY11_STYPI6.690e-2140.83Ras guanine nucleotide exchange factor J n=2 Tax=S... [more]
UPI0009E2DD0D9.120e-2141.67uncharacterized protein LOC110060183 n=1 Tax=Orbic... [more]
G3I7B6_CRIGR1.010e-2041.67Ras-specific guanine nucleotide-releasing factor 2... [more]
F4PV26_CAVFA1.180e-2042.15RasGEF domain-containing protein n=1 Tax=Cavenderi... [more]
A0A3P4RME2_GULGU1.390e-2042.20Ras-GEF domain-containing protein n=2 Tax=Caniform... [more]
A0A7S4UB36_9EUKA1.640e-2038.21Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111613contigM-pyrifera_M_contig111613:70..447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score96.3
Seed ortholog evalue1e-17
Seed eggNOG ortholog192875.XP_004345735.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ras guanyl-nucleotide exchange factor activity
EggNOG OGs38GRG@33154,KOG3417@1,KOG3417@2759
COG Functional cat.T
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size378
Cds size357
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.53366-CDS-M-pyrifera_M_contig111613:69..4261622815628.53366-CDS-M-pyrifera_M_contig111613:69..426Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111613 70..426 -
1692277494.9859014-CDS-M-pyrifera_M_contig111613:69..4261692277494.9859014-CDS-M-pyrifera_M_contig111613:69..426Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111613 70..426 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.5450928-UTR-M-pyrifera_M_contig111613:426..4471622815628.5450928-UTR-M-pyrifera_M_contig111613:426..447Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111613 427..447 -
1692277494.9974787-UTR-M-pyrifera_M_contig111613:426..4471692277494.9974787-UTR-M-pyrifera_M_contig111613:426..447Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111613 427..447 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111613.2412.1prot_M-pyrifera_M_contig111613.2412.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111613 70..426 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111613.2412.1

>prot_M-pyrifera_M_contig111613.2412.1 ID=prot_M-pyrifera_M_contig111613.2412.1|Name=mRNA_M-pyrifera_M_contig111613.2412.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
MAALKQLELLMDPQGNYKAYRETMKTTKLPAVPYVGIYLKDATFIDEGNK
DFLESGAANFEKMRMKAALISSIEFFQLRAYKFGQDEEIKAYLQTVAVMD
EKTAYKHSLQCEPRTMDV*
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mRNA from alignment at M-pyrifera_M_contig111613:70..447-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111613.2412.1 ID=mRNA_M-pyrifera_M_contig111613.2412.1|Name=mRNA_M-pyrifera_M_contig111613.2412.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig111613:70..447- (Macrocystis pyrifera P11B4 male)
CAGCTGGTGCCGCGCAAGCAGATGGCAGCGCTGAAGCAGCTGGAGCTGCT GATGGACCCGCAGGGCAACTACAAGGCCTACCGCGAGACGATGAAGACCA CCAAGTTGCCCGCAGTGCCTTACGTGGGCATCTACCTCAAGGACGCCACC TTCATCGACGAGGGCAACAAGGACTTCCTCGAGTCGGGCGCCGCCAACTT CGAGAAAATGCGCATGAAGGCGGCGCTCATCTCGAGCATCGAGTTCTTCC AGCTGCGCGCCTACAAGTTCGGCCAGGACGAAGAGATCAAGGCCTACCTC CAGACCGTTGCGGTGATGGACGAGAAGACTGCCTACAAGCACTCGCTGCA GTGCGAGCCCCGCACAATGGACGTGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111613:70..447-

>mRNA_M-pyrifera_M_contig111613.2412.1 ID=mRNA_M-pyrifera_M_contig111613.2412.1|Name=mRNA_M-pyrifera_M_contig111613.2412.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig111613:70..447- (Macrocystis pyrifera P11B4 male)
ATGGCAGCGCTGAAGCAGCTGGAGCTGCTGATGGACCCGCAGGGCAACTA
CAAGGCCTACCGCGAGACGATGAAGACCACCAAGTTGCCCGCAGTGCCTT
ACGTGGGCATCTACCTCAAGGACGCCACCTTCATCGACGAGGGCAACAAG
GACTTCCTCGAGTCGGGCGCCGCCAACTTCGAGAAAATGCGCATGAAGGC
GGCGCTCATCTCGAGCATCGAGTTCTTCCAGCTGCGCGCCTACAAGTTCG
GCCAGGACGAAGAGATCAAGGCCTACCTCCAGACCGTTGCGGTGATGGAC
GAGAAGACTGCCTACAAGCACTCGCTGCAGTGCGAGCCCCGCACAATGGA
CGTGTGAATGGCAGCGCTGAAGCAGCTGGAGCTGCTGATGGACCCGCAGG
GCAACTACAAGGCCTACCGCGAGACGATGAAGACCACCAAGTTGCCCGCA
GTGCCTTACGTGGGCATCTACCTCAAGGACGCCACCTTCATCGACGAGGG
CAACAAGGACTTCCTCGAGTCGGGCGCCGCCAACTTCGAGAAAATGCGCA
TGAAGGCGGCGCTCATCTCGAGCATCGAGTTCTTCCAGCTGCGCGCCTAC
AAGTTCGGCCAGGACGAAGAGATCAAGGCCTACCTCCAGACCGTTGCGGT
GATGGACGAGAAGACTGCCTACAAGCACTCGCTGCAGTGCGAGCCCCGCA
CAATGGACGTGTGA
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