mRNA_M-pyrifera_M_contig111439.2373.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111439.2373.1
Unique NamemRNA_M-pyrifera_M_contig111439.2373.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111439.2373.1 vs. uniprot
Match: A0A8J4V7Z8_9MYCE (C3H1-type domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V7Z8_9MYCE)

HSP 1 Score: 105 bits (261), Expect = 3.180e-23
Identity = 51/131 (38.93%), Postives = 81/131 (61.83%), Query Frame = 1
Query:    1 GMRAKAEYQADEGLEVVSASETARWWLYTFLRPDAHLLLGRCSVQQGQLLAVERKDMPRILAPGCSFKPESASKRLLVTLKALAKLEEGSFLLSHREGDTSLRLWEE----ASDATDAERGEGAVRDVHAE 381
            G++ K EY++D+GLE V+  +TA+WW YTF+RPDAHLLL R ++   ++L +E+K+M  IL P   F P  +SK  L  LK L  ++ G++LLSH   D  + +++     +SD ++       + D+H E
Sbjct:  615 GIKTKIEYRSDKGLEEVTIGDTAKWWSYTFIRPDAHLLLSRINIWNKKILTIEKKEMTHILHPKSPFNPSRSSKITLEILKKLLTMDHGNYLLSHVSCDNVVHIYKSFTPPSSDESEPSSTNADIYDLHLE 745          
BLAST of mRNA_M-pyrifera_M_contig111439.2373.1 vs. uniprot
Match: UPI000644AE56 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644AE56)

HSP 1 Score: 103 bits (256), Expect = 1.510e-22
Identity = 46/114 (40.35%), Postives = 72/114 (63.16%), Query Frame = 1
Query:    1 GMRAKAEYQADEGLEVVSASETARWWLYTFLRPDAHLLLGRCSVQQGQLLAVERKDMPRILAPGCSFKPESASKRLLVTLKALAKLEEGSFLLSHREGDTSLRLWEEASDATDA 342
            G++ K EY  D+GLE    S+TA+WW YT++RPDAHL+  R ++    ++++E+K+M  IL P C F P  +SK  L  LK + +L  G+ L+SHR  ++ +  ++EA  A  A
Sbjct:  685 GIKTKVEYHPDKGLEDALPSDTAKWWSYTYIRPDAHLIFARINIWNRTIMSLEKKEMTHILHPKCQFNPAKSSKVTLELLKHVTRLPVGAHLMSHRSSESYVHFYQEADVANTA 798          
BLAST of mRNA_M-pyrifera_M_contig111439.2373.1 vs. uniprot
Match: D3B449_POLPP (C3H1-type domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B449_POLPP)

HSP 1 Score: 100 bits (250), Expect = 9.440e-22
Identity = 50/126 (39.68%), Postives = 76/126 (60.32%), Query Frame = 1
Query:    1 GMRAKAEYQADEGLEVVSASETARWWLYTFLRPDAHLLLGRCSVQQGQLLAVERKDMPRILAPGCSFKPESASKRLLVTLKALAKLEEGS-FLLSHREGDTSLRLWEEASDATDAERGEGAVRDVH 375
            G++ K EYQA+ GLE  S S+TA+WW YT++RPDAHL+  R +V   +LLA+E+KDM  IL P C F P  +SK  +  LK +  L  G  FL+ H+  +  + + ++ ++    E     + D+H
Sbjct:  566 GIKTKLEYQAERGLEDASVSDTAKWWSYTYIRPDAHLIFARVNVWNRKLLALEKKDMTHILHPKCQFNPSKSSKITMELLKHIKNLSGGDRFLMVHKSLENFVHIHQQ-TETNQTENPNDIIYDLH 690          
BLAST of mRNA_M-pyrifera_M_contig111439.2373.1 vs. uniprot
Match: F4PNJ4_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PNJ4_CAVFA)

HSP 1 Score: 97.4 bits (241), Expect = 1.630e-20
Identity = 47/117 (40.17%), Postives = 73/117 (62.39%), Query Frame = 1
Query:    1 GMRAKAEYQADEG-LEVVSASETARWWLYTFLRPDAHLLLGRCSVQQGQLLAVERKDMPRILAPGCSFKPESASKRLLVTLKALAKLEEGSFLLSHREGDTSLRLWEEASDATDAER 348
            G++ K EYQ++   +E +S SET++WW YT++RPDAHLL  R +V   +LL++E+KDM  IL P C F P  +SK  +  L+    L EG  LL HR  +  + +++E  + +  E+
Sbjct: 1380 GIKTKVEYQSERSTIEDISPSETSKWWSYTYIRPDAHLLFARVNVWNHRLLSIEKKDMTHILHPKCGFSPSKSSKITIELLRRCVGLPEGRHLLLHRPTEHFVYVYKEEENYSTEEK 1496          
BLAST of mRNA_M-pyrifera_M_contig111439.2373.1 vs. uniprot
Match: F0ZJU6_DICPU (C3H1-type domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZJU6_DICPU)

HSP 1 Score: 97.1 bits (240), Expect = 2.090e-20
Identity = 45/120 (37.50%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    1 GMRAKAEYQADEGLEVVSASETARWWLYTFLRPDAHLLLGRCSVQQGQLLAVERKDMPRILAPGCSFKPESASKRLLVTLKALAKLEEGS-------FLLSHREGDTSLRLWEEASDATD 339
            G++ K EY+ ++GLE  + S++++WW YTF+RPDAHLLL R ++   ++L++E+KDM  IL+P   FKP  +SK  L  LK +  L   +       F+LSH   D  + +++   +  D
Sbjct:  587 GLKTKIEYRPEKGLEETTISDSSKWWAYTFIRPDAHLLLSRVNIWNNRILSIEKKDMANILSPKSHFKPVKSSKITLEILKKIKSLSNNNNSLNEKYFILSHTPNDNFVYIYKSIEEKED 706          
BLAST of mRNA_M-pyrifera_M_contig111439.2373.1 vs. uniprot
Match: A0A397GPX8_9GLOM (NARG2_C domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397GPX8_9GLOM)

HSP 1 Score: 97.1 bits (240), Expect = 2.130e-20
Identity = 56/179 (31.28%), Postives = 87/179 (48.60%), Query Frame = 1
Query:    1 GMRAKAEYQADEGLEVVSASETARWWLYTFLRPDAHLLLGRCSVQQGQLLAVERKDMPRILAPGCSFKPESASKRLLVTLKALAKLEEGSFLLSHREGDTSLRLWEEAS--------DATDAERGEGAVRDVHAEILA-----------SGRSDESAVPFLMPQWQEVAGQIPYTFPVQ 480
            G++ K EYQ D G E ++  E ARWW+Y+++R  AHL+LG   V + +L+ +ERK M  I+  G    P S  K L    K L  L +G+FL SH +GD    +++           + + +      +  +H EI             S   D   +PF+  QW     Q+P+TFP++
Sbjct:  675 GIKTKLEYQLDLGSEEITNLERARWWIYSYIRNSAHLILGHIDVPKNELVNIERKRMADIIPDGNWPLPHS--KMLYYVFKKLQSLPQGTFLFSHEKGDPHATIFKSVDIGGESHNDNQSSSSMNTPEITSIHPEITTHLYDLYKVHSRSPLLDSETIPFIPIQWSGPPNQVPFTFPIR 851          
BLAST of mRNA_M-pyrifera_M_contig111439.2373.1 vs. uniprot
Match: Q54MW3_DICDI (C3H1-type domain-containing protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54MW3_DICDI)

HSP 1 Score: 93.2 bits (230), Expect = 4.710e-19
Identity = 42/86 (48.84%), Postives = 63/86 (73.26%), Query Frame = 1
Query:    1 GMRAKAEYQADEGLEVVSASETARWWLYTFLRPDAHLLLGRCSVQQGQLLAVERKDMPRILAPGCSFKPESASKRLLVTLKALAKL 258
            G++ K EY+AD+G+E  + S++A+WW YT++RPDAHLLL R ++   +LLA+E+KDMP IL    +FKP  +SK   +TL+ L K+
Sbjct:  703 GLKTKVEYRADKGIEETTLSDSAKWWAYTYIRPDAHLLLSRVNIWNNRLLAIEKKDMPLILNTKSNFKPIKSSK---ITLEILKKV 785          
BLAST of mRNA_M-pyrifera_M_contig111439.2373.1 vs. uniprot
Match: A0A2P6NGP2_9EUKA (NARG2_C domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NGP2_9EUKA)

HSP 1 Score: 87.8 bits (216), Expect = 3.660e-17
Identity = 46/103 (44.66%), Postives = 61/103 (59.22%), Query Frame = 1
Query:    1 GMRAKAEYQAD--EGLEVVSASETARWWLYTFLRPDAHLLLGRCSVQQGQLLAVERKDMPRILAPGCSFKPESASKRLLVTLKALAKLEE-GSFLLSHREGDT 300
            G+RAK EY+ +  E     S  ETA  W+YTF+RPDAHL+  R     G +L  +R DMP IL P C F PE  SK L+  L+ L  +EE G +LL+ +  +T
Sbjct: 1030 GLRAKMEYREEGQENFSEFSQKETANMWIYTFIRPDAHLMFSRVDPAVGSVLESDRLDMPSILHPNCGFSPEVGSKLLISILRHLHTIEEEGHYLLTRKNEET 1132          
BLAST of mRNA_M-pyrifera_M_contig111439.2373.1 vs. uniprot
Match: A0A261XUU0_9FUNG (C3H1-type domain-containing protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XUU0_9FUNG)

HSP 1 Score: 73.2 bits (178), Expect = 4.340e-12
Identity = 54/158 (34.18%), Postives = 78/158 (49.37%), Query Frame = 1
Query:    4 MRAKAEYQADEGL-EVVSASETARWWLYTFLRPDAHLLLGRCSVQQGQLLAVERKDMPRILAPGCSFKPESASKRLLVTLKALAKLEEGSFLLSHREGDTSLRLWEEASDATDAERGEGAVRDVHAEILASGRSDESAVPFLMPQWQEVAGQIPYTFP 474
            +RAK EY  DE + E ++  E ARWWL ++LR  AH+LLG  +V +  ++ VERK M  I      + P   SK L   L     L  G +LL H++G+ ++ + +     T       +  D+H E      + E A   L+P W     Q PYTFP
Sbjct:  639 LRAKLEYHCDENMREEITDQERARWWLQSYLRGHAHVLLGHINVLKHAVIGVERKTMIDIFNNN-RWNPMQHSKMLYHIL-----LVPGDYLLMHKKGEWNVHVLKSVDQPT------ASSYDLH-EAHQCLPAQEEATQVLIP-WSGPHDQFPYTFP 782          
BLAST of mRNA_M-pyrifera_M_contig111439.2373.1 vs. uniprot
Match: A0A6P8IJB0_ACTTE (uncharacterized protein LOC116301861 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IJB0_ACTTE)

HSP 1 Score: 72.4 bits (176), Expect = 7.750e-12
Identity = 38/109 (34.86%), Postives = 59/109 (54.13%), Query Frame = 1
Query:   10 AKAEYQADEGLEVVSASETARWWLYTFLRPDAHLLLGRCSVQQGQLLAVERKDMPRILAPGCSFKPESASKRLLVTLKALAKLEEGSFLLSHREGDTSLRLWEEASDAT 336
            AK E+Q   G E ++ SETARWWL T++RP+  +L  R   Q  ++L V+    P +L+ G +F P    K +     +LA+L   S+LL+H        L++ A  +T
Sbjct:  390 AKPEFQWQFGYERLTPSETARWWLKTYIRPNTTVLCARIKRQNNEVLRVDEMTPPDVLSSGSAFNPAQGMKLVYQIFNSLAQLACDSYLLTHERFAIHCCLYKNAQHST 498          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111439.2373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J4V7Z8_9MYCE3.180e-2338.93C3H1-type domain-containing protein n=1 Tax=Polysp... [more]
UPI000644AE561.510e-2240.35hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
D3B449_POLPP9.440e-2239.68C3H1-type domain-containing protein n=1 Tax=Polysp... [more]
F4PNJ4_CAVFA1.630e-2040.17Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
F0ZJU6_DICPU2.090e-2037.50C3H1-type domain-containing protein n=1 Tax=Dictyo... [more]
A0A397GPX8_9GLOM2.130e-2031.28NARG2_C domain-containing protein n=1 Tax=Diversis... [more]
Q54MW3_DICDI4.710e-1948.84C3H1-type domain-containing protein n=1 Tax=Dictyo... [more]
A0A2P6NGP2_9EUKA3.660e-1744.66NARG2_C domain-containing protein n=1 Tax=Planopro... [more]
A0A261XUU0_9FUNG4.340e-1234.18C3H1-type domain-containing protein n=1 Tax=Bifigu... [more]
A0A6P8IJB0_ACTTE7.750e-1234.86uncharacterized protein LOC116301861 n=1 Tax=Actin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111439contigM-pyrifera_M_contig111439:110..589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue1.4e-17
Seed eggNOG ortholog5786.XP_003287681.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.NMDA receptor-regulated gene protein 2 C-terminus
EggNOG OGs292EU@1,2R9BB@2759,3XG1M@554915
COG Functional cat.S
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons1
Model size480
Cds size477
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.5046146-CDS-M-pyrifera_M_contig111439:109..5861622815626.5046146-CDS-M-pyrifera_M_contig111439:109..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111439 110..586 -
1692277494.0077844-CDS-M-pyrifera_M_contig111439:109..5861692277494.0077844-CDS-M-pyrifera_M_contig111439:109..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111439 110..586 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.5223618-UTR-M-pyrifera_M_contig111439:586..5891622815626.5223618-UTR-M-pyrifera_M_contig111439:586..589Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111439 587..589 -
1692277494.0178385-UTR-M-pyrifera_M_contig111439:586..5891692277494.0178385-UTR-M-pyrifera_M_contig111439:586..589Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111439 587..589 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111439.2373.1prot_M-pyrifera_M_contig111439.2373.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111439 110..586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111439.2373.1

>prot_M-pyrifera_M_contig111439.2373.1 ID=prot_M-pyrifera_M_contig111439.2373.1|Name=mRNA_M-pyrifera_M_contig111439.2373.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=159bp
MRAKAEYQADEGLEVVSASETARWWLYTFLRPDAHLLLGRCSVQQGQLLA
VERKDMPRILAPGCSFKPESASKRLLVTLKALAKLEEGSFLLSHREGDTS
LRLWEEASDATDAERGEGAVRDVHAEILASGRSDESAVPFLMPQWQEVAG
QIPYTFPVQ
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mRNA from alignment at M-pyrifera_M_contig111439:110..589-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111439.2373.1 ID=mRNA_M-pyrifera_M_contig111439.2373.1|Name=mRNA_M-pyrifera_M_contig111439.2373.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig111439:110..589- (Macrocystis pyrifera P11B4 male)
GGCATGCGCGCCAAGGCAGAGTACCAGGCCGACGAGGGCCTGGAGGTCGT CTCTGCCTCGGAGACGGCGCGGTGGTGGCTGTACACCTTCCTGCGGCCCG ACGCCCACCTCCTCCTCGGCCGCTGCTCGGTGCAGCAGGGCCAGCTGCTG GCCGTGGAGCGCAAGGACATGCCCCGCATCCTGGCGCCCGGCTGCAGCTT CAAGCCCGAGAGCGCTTCCAAGCGCCTGCTCGTCACCCTCAAGGCCCTCG CCAAGCTGGAGGAGGGCTCCTTCCTCCTCTCCCACCGCGAGGGCGACACC TCCCTCCGCCTCTGGGAGGAGGCGAGCGACGCCACCGACGCAGAGAGGGG CGAGGGAGCGGTGCGGGACGTGCACGCCGAGATCCTCGCGTCTGGCCGCT CCGACGAGAGCGCAGTGCCCTTTCTGATGCCACAGTGGCAGGAGGTGGCG GGCCAGATTCCCTACACCTTTCCGGTGCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111439:110..589-

>mRNA_M-pyrifera_M_contig111439.2373.1 ID=mRNA_M-pyrifera_M_contig111439.2373.1|Name=mRNA_M-pyrifera_M_contig111439.2373.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=954bp|location=Sequence derived from alignment at M-pyrifera_M_contig111439:110..589- (Macrocystis pyrifera P11B4 male)
ATGCGCGCCAAGGCAGAGTACCAGGCCGACGAGGGCCTGGAGGTCGTCTC
TGCCTCGGAGACGGCGCGGTGGTGGCTGTACACCTTCCTGCGGCCCGACG
CCCACCTCCTCCTCGGCCGCTGCTCGGTGCAGCAGGGCCAGCTGCTGGCC
GTGGAGCGCAAGGACATGCCCCGCATCCTGGCGCCCGGCTGCAGCTTCAA
GCCCGAGAGCGCTTCCAAGCGCCTGCTCGTCACCCTCAAGGCCCTCGCCA
AGCTGGAGGAGGGCTCCTTCCTCCTCTCCCACCGCGAGGGCGACACCTCC
CTCCGCCTCTGGGAGGAGGCGAGCGACGCCACCGACGCAGAGAGGGGCGA
GGGAGCGGTGCGGGACGTGCACGCCGAGATCCTCGCGTCTGGCCGCTCCG
ACGAGAGCGCAGTGCCCTTTCTGATGCCACAGTGGCAGGAGGTGGCGGGC
CAGATTCCCTACACCTTTCCGGTGCAGATGCGCGCCAAGGCAGAGTACCA
GGCCGACGAGGGCCTGGAGGTCGTCTCTGCCTCGGAGACGGCGCGGTGGT
GGCTGTACACCTTCCTGCGGCCCGACGCCCACCTCCTCCTCGGCCGCTGC
TCGGTGCAGCAGGGCCAGCTGCTGGCCGTGGAGCGCAAGGACATGCCCCG
CATCCTGGCGCCCGGCTGCAGCTTCAAGCCCGAGAGCGCTTCCAAGCGCC
TGCTCGTCACCCTCAAGGCCCTCGCCAAGCTGGAGGAGGGCTCCTTCCTC
CTCTCCCACCGCGAGGGCGACACCTCCCTCCGCCTCTGGGAGGAGGCGAG
CGACGCCACCGACGCAGAGAGGGGCGAGGGAGCGGTGCGGGACGTGCACG
CCGAGATCCTCGCGTCTGGCCGCTCCGACGAGAGCGCAGTGCCCTTTCTG
ATGCCACAGTGGCAGGAGGTGGCGGGCCAGATTCCCTACACCTTTCCGGT
GCAG
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