mRNA_M-pyrifera_M_contig111354.2367.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111354.2367.1
Unique NamemRNA_M-pyrifera_M_contig111354.2367.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111354.2367.1 vs. uniprot
Match: A0A0T5YSM4_9GAMM (AsmA family/AsmA-like C-terminal region n=1 Tax=endosymbiont of Ridgeia piscesae TaxID=54398 RepID=A0A0T5YSM4_9GAMM)

HSP 1 Score: 53.5 bits (127), Expect = 1.450e-5
Identity = 35/100 (35.00%), Postives = 53/100 (53.00%), Query Frame = 1 
Query:   28 PLNCAALRLDLVRGRTAATAGPVIVARSDKLELIGRGTLDLGREQIALKLQPAPQTGLALGAPGNPRTVSISGSLRAPVMKSKAGDLLHESLSIGTSLAT 327
            P+NC  +  D+V+G+  A A   IV  +  L LIG G +DLGREQ+ L+L P  +    +     P  +S+ G+L  P +  K    L  + +  T+LAT
Sbjct:  576 PINCGVVHFDIVKGQADARA---IVFDTGALSLIGTGKIDLGREQLDLRLDPRAKNVSVMKLTLVP--LSVGGTLAHPTITPKVAGTLKTTATTLTALAT 670
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BLAST of mRNA_M-pyrifera_M_contig111354.2367.1 vs. uniprot
Match: A0A0T5ZCR7_9GAMM (Uncharacterized protein involved in outer membrane biogenesis n=5 Tax=sulfur-oxidizing symbionts TaxID=32036 RepID=A0A0T5ZCR7_9GAMM)

HSP 1 Score: 53.5 bits (127), Expect = 1.500e-5
Identity = 35/100 (35.00%), Postives = 53/100 (53.00%), Query Frame = 1 
Query:   28 PLNCAALRLDLVRGRTAATAGPVIVARSDKLELIGRGTLDLGREQIALKLQPAPQTGLALGAPGNPRTVSISGSLRAPVMKSKAGDLLHESLSIGTSLAT 327
            P+NC  +  D+V+G+  A A   IV  +  L LIG G +DLGREQ+ L+L P  +    +     P  +S+ G+L  P +  K    L  + +  T+LAT
Sbjct:  858 PINCGVVHFDIVKGQADARA---IVFDTGALSLIGTGKIDLGREQLDLRLDPRAKNVSVMKLTLVP--LSVGGTLAHPTITPKVAGTLKTTATTLTALAT 952
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BLAST of mRNA_M-pyrifera_M_contig111354.2367.1 vs. uniprot
Match: UPI0019645E9E (AsmA family protein n=1 Tax=Desulfobulbus rhabdoformis TaxID=34032 RepID=UPI0019645E9E)

HSP 1 Score: 52.0 bits (123), Expect = 5.020e-5
Identity = 37/127 (29.13%), Postives = 66/127 (51.97%), Query Frame = 1 
Query:   31 LNCAALRLDLVRGRTAATAGPVIVARSDKLELIGRGTLDLGREQIALKLQPAPQ--TGLALGAPGNPRTVSISGSLRAPVMKSKAGDLLHESLSIGTSLATNPLARAADTVFARHGTPRTSCAAMLG 405
            ++CA +R  L  G   ATA   I  R+DK+++IG GT++L  EQ+ L ++P  +   G++L +P     V + G+L  P M   A   +  ++S+G  +AT  ++   + +  +       C+  LG
Sbjct:  613 MSCAVVRFVLNDG--VATADKGIAMRTDKVDVIGSGTINLKNEQLNLGIKPRARGGVGVSLSSP-LAGLVKVKGTLANPSMGLDAAGTMKTAVSLGAGVATGGISTLGELLVDKVVADGDPCSTALG 736
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111354.2367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0T5YSM4_9GAMM1.450e-535.00AsmA family/AsmA-like C-terminal region n=1 Tax=en... [more]
A0A0T5ZCR7_9GAMM1.500e-535.00Uncharacterized protein involved in outer membrane... [more]
UPI0019645E9E5.020e-529.13AsmA family protein n=1 Tax=Desulfobulbus rhabdofo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111354contigM-pyrifera_M_contig111354:9..419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size411
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.1558347-CDS-M-pyrifera_M_contig111354:8..4191622815626.1558347-CDS-M-pyrifera_M_contig111354:8..419Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111354 9..419 +
1692277493.824708-CDS-M-pyrifera_M_contig111354:8..4191692277493.824708-CDS-M-pyrifera_M_contig111354:8..419Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111354 9..419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111354.2367.1prot_M-pyrifera_M_contig111354.2367.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111354 9..419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111354.2367.1

>prot_M-pyrifera_M_contig111354.2367.1 ID=prot_M-pyrifera_M_contig111354.2367.1|Name=mRNA_M-pyrifera_M_contig111354.2367.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
PLQHPAPQAPLNCAALRLDLVRGRTAATAGPVIVARSDKLELIGRGTLDL
GREQIALKLQPAPQTGLALGAPGNPRTVSISGSLRAPVMKSKAGDLLHES
LSIGTSLATNPLARAADTVFARHGTPRTSCAAMLGD*
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mRNA from alignment at M-pyrifera_M_contig111354:9..419+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111354.2367.1 ID=mRNA_M-pyrifera_M_contig111354.2367.1|Name=mRNA_M-pyrifera_M_contig111354.2367.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig111354:9..419+ (Macrocystis pyrifera P11B4 male)
CCCCTCCAGCACCCCGCACCACAAGCGCCGCTCAATTGCGCGGCGCTGCG
ACTCGACCTGGTGCGCGGACGCACCGCGGCCACAGCCGGGCCGGTGATCG
TCGCCCGCAGCGACAAACTCGAACTCATCGGCAGGGGCACGCTGGATCTC
GGCCGCGAGCAGATCGCACTGAAGCTGCAACCGGCACCGCAAACCGGCCT
CGCACTCGGGGCCCCCGGCAATCCGCGAACCGTGTCGATCAGCGGTTCGC
TGCGAGCCCCGGTGATGAAATCCAAGGCAGGCGATCTGTTGCACGAAAGC
CTGTCGATCGGCACATCCCTGGCCACGAATCCCCTCGCGCGCGCAGCCGA
CACGGTATTCGCCCGCCACGGGACGCCACGCACGAGTTGCGCGGCGATGC
TCGGCGATTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111354:9..419+

>mRNA_M-pyrifera_M_contig111354.2367.1 ID=mRNA_M-pyrifera_M_contig111354.2367.1|Name=mRNA_M-pyrifera_M_contig111354.2367.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig111354:9..419+ (Macrocystis pyrifera P11B4 male)
CCCCTCCAGCACCCCGCACCACAAGCGCCGCTCAATTGCGCGGCGCTGCG
ACTCGACCTGGTGCGCGGACGCACCGCGGCCACAGCCGGGCCGGTGATCG
TCGCCCGCAGCGACAAACTCGAACTCATCGGCAGGGGCACGCTGGATCTC
GGCCGCGAGCAGATCGCACTGAAGCTGCAACCGGCACCGCAAACCGGCCT
CGCACTCGGGGCCCCCGGCAATCCGCGAACCGTGTCGATCAGCGGTTCGC
TGCGAGCCCCGGTGATGAAATCCAAGGCAGGCGATCTGTTGCACGAAAGC
CTGTCGATCGGCACATCCCTGGCCACGAATCCCCTCGCGCGCGCAGCCGA
CACGGTATTCGCCCGCCACGGGACGCCACGCACGAGTTGCGCGGCGATGC
TCGGCGATTAACCCCTCCAGCACCCCGCACCACAAGCGCCGCTCAATTGC
GCGGCGCTGCGACTCGACCTGGTGCGCGGACGCACCGCGGCCACAGCCGG
GCCGGTGATCGTCGCCCGCAGCGACAAACTCGAACTCATCGGCAGGGGCA
CGCTGGATCTCGGCCGCGAGCAGATCGCACTGAAGCTGCAACCGGCACCG
CAAACCGGCCTCGCACTCGGGGCCCCCGGCAATCCGCGAACCGTGTCGAT
CAGCGGTTCGCTGCGAGCCCCGGTGATGAAATCCAAGGCAGGCGATCTGT
TGCACGAAAGCCTGTCGATCGGCACATCCCTGGCCACGAATCCCCTCGCG
CGCGCAGCCGACACGGTATTCGCCCGCCACGGGACGCCACGCACGAGTTG
CGCGGCGATGCTCGGCGATTAA
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