mRNA_M-pyrifera_M_contig110769.2263.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110769.2263.1
Unique NamemRNA_M-pyrifera_M_contig110769.2263.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110769.2263.1 vs. uniprot
Match: A0A8J4PRA7_9MYCE (Rho-GAP domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PRA7_9MYCE)

HSP 1 Score: 61.6 bits (148), Expect = 2.010e-8
Identity = 45/137 (32.85%), Postives = 70/137 (51.09%), Query Frame = 1 
Query:    1 QLCDYWDAYTDFFTKGFKWVNNMQPVIERYREHLNLEQEELDKRKKDENTSKSLFKVTGET--KVFGTDLEELCTREGLK-VPKFLKFTCSWIEKNASEMEGIFRISSFKDTMEDYKRMIDEGWRLDYSEVADPHVV 402
             L   ++ Y DF+ KG   +  ++  IE Y++ + LE            T+K   K+      K FG  LEE+  RE  K +P FL+    ++EK A   EG+FRIS+ K ++E  ++ I+ G  L+ + V D HVV
Sbjct:  179 SLLSAYEGYHDFYQKGTFQLTKIKSDIENYKKVI-LE------------TNKVAAKLRNYVPRKTFGIKLEEIFARESSKHLPLFLEEIFKYLEKEAPNTEGVFRISAGKSSIEALQQKIESGQPLELNNVLDTHVV 302
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BLAST of mRNA_M-pyrifera_M_contig110769.2263.1 vs. uniprot
Match: UPI000644AF59 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644AF59)

HSP 1 Score: 59.7 bits (143), Expect = 9.430e-8
Identity = 41/129 (31.78%), Postives = 66/129 (51.16%), Query Frame = 1 
Query:   19 DAYTDFFTKGFKWVNNMQPVIERYREHLNLEQEELDKRKKDENTSKSLFKVTGETKVFGTDLEELCTREGLK-VPKFLKFTCSWIEKNASEMEGIFRISSFKDTMEDYKRMIDEGWRLDYSEVADPHVV 402
            +AY DFF KG      ++  I+ YR+ +            + N  ++  +     K FG  LEE+  RE  + +P+FL      +EK+A  +EGIFRIS+ K ++E  ++ I+    LD   + DPH+V
Sbjct:  183 EAYHDFFQKGAFQFARIKADIDNYRKVI-----------METNKVQAKLRNYIPRKTFGIKLEEVFARESNRGMPQFLDEIFKHLEKSAPTLEGIFRISAGKSSIETLQQKIESSQPLDLHTLLDPHIV 300
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BLAST of mRNA_M-pyrifera_M_contig110769.2263.1 vs. uniprot
Match: L8GXS7_ACACA (RhoGAP domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GXS7_ACACA)

HSP 1 Score: 56.6 bits (135), Expect = 1.160e-6
Identity = 42/158 (26.58%), Postives = 71/158 (44.94%), Query Frame = 1 
Query:    1 QLCDYWDAYTDFFTKGFKWVNNMQPVIERYREHLNLEQEELDKRKKDENTS-------------------KSLFKVTGETKVFGTDLEELCTREGL---KVPKFLKFTCSWIEKNASEMEGIFRISSFKDTMEDYKRMI--DEGWRLDYSEVADPHVV 402
             LCDY DAY  FF +G + ++ +QP IERYRE+         +R+KDE+                     +  +   G T +FG  L  L  +EG+   +VP        +I ++  +  G+FR+++ ++      ++I    G  ++     DPH V
Sbjct:  287 HLCDYLDAYGQFFAQGQQMLSRLQPSIERYREYT--------QRQKDEDRQHXXXXXXXXXXXREALVLEQKKYAEEGNTSLFGAPLHVLYEKEGISPPQVPSLYHVLIKYIREHGLKEVGLFRMAAAQNATAHIMKLILTASGRPIELEGELDPHAV 436
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110769.2263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A8J4PRA7_9MYCE2.010e-832.85Rho-GAP domain-containing protein n=1 Tax=Polyspho... [more]
UPI000644AF599.430e-831.78hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
L8GXS7_ACACA1.160e-626.58RhoGAP domain containing protein n=1 Tax=Acanthamo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110769contigM-pyrifera_M_contig110769:7..573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue1.9e-15
Seed eggNOG ortholog5786.XP_003290664.1
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0043087,GO:0044424,GO:0044464,GO:0050790,GO:0051336,GO:0065007,GO:0065009
EggNOG free text desc.BAR domain of APPL family
EggNOG OGs3XEBF@554915,KOG4270@1,KOG4270@2759
COG Functional cat.T
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons2
Model size402
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.6572082-CDS-M-pyrifera_M_contig110769:6..1281622815619.6572082-CDS-M-pyrifera_M_contig110769:6..128Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110769 7..128 -
1692277490.6001325-CDS-M-pyrifera_M_contig110769:6..1281692277490.6001325-CDS-M-pyrifera_M_contig110769:6..128Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110769 7..128 -
1622815619.6725504-CDS-M-pyrifera_M_contig110769:293..5731622815619.6725504-CDS-M-pyrifera_M_contig110769:293..573Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110769 294..573 -
1692277490.609525-CDS-M-pyrifera_M_contig110769:293..5731692277490.609525-CDS-M-pyrifera_M_contig110769:293..573Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110769 294..573 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110769.2263.1prot_M-pyrifera_M_contig110769.2263.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110769 7..573 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110769.2263.1

>prot_M-pyrifera_M_contig110769.2263.1 ID=prot_M-pyrifera_M_contig110769.2263.1|Name=mRNA_M-pyrifera_M_contig110769.2263.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
QLCDYWDAYTDFFTKGFKWVNNMQPVIERYREHLNLEQEELDKRKKDENT
SKSLFKVTGETKVFGTDLEELCTREGLKVPKFLKFTCSWIEKNASEMEGI
FRISSFKDTMEDYKRMIDEGWRLDYSEVADPHVV
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mRNA from alignment at M-pyrifera_M_contig110769:7..573-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110769.2263.1 ID=mRNA_M-pyrifera_M_contig110769.2263.1|Name=mRNA_M-pyrifera_M_contig110769.2263.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=567bp|location=Sequence derived from alignment at M-pyrifera_M_contig110769:7..573- (Macrocystis pyrifera P11B4 male)
CAGCTGTGCGACTACTGGGACGCCTACACGGACTTCTTCACAAAGGGCTT
CAAGTGGGTCAACAACATGCAGCCGGTCATCGAGCGGTACCGCGAGCACC
TCAACCTCGAGCAGGAGGAGCTGGACAAGCGCAAGAAGGACGAAAACACC
TCCAAGTCTCTCTTCAAGGTCACGGGCGAGACAAAGGTGTTTGGCACCGA
CCTCGAGGAGCTCTGCACCCGCGAGGGCCTCAAGGTGCCCAAGTTCCTCA
AGTTCACCTGCTCCTGGATCGAGAAGAACGGTCTGCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCACTCTCTCACACACACTCTCACACACACTCTC
TCACACATCCTCTCTCTCACACACACATCCTCTCTCTCACACACACACTC
TCTCTCCCCCTCCACTTCCCCCTGTGCTATGCCTGACGTCGCCAGCGTCG
GAGATGGAGGGCATCTTCAGGATCTCGTCCTTCAAGGACACGATGGAGGA
CTACAAGCGGATGATCGACGAGGGCTGGCGCCTGGACTACTCCGAGGTGG
CCGACCCCCACGTGGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110769:7..573-

>mRNA_M-pyrifera_M_contig110769.2263.1 ID=mRNA_M-pyrifera_M_contig110769.2263.1|Name=mRNA_M-pyrifera_M_contig110769.2263.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig110769:7..573- (Macrocystis pyrifera P11B4 male)
CAGCTGTGCGACTACTGGGACGCCTACACGGACTTCTTCACAAAGGGCTT
CAAGTGGGTCAACAACATGCAGCCGGTCATCGAGCGGTACCGCGAGCACC
TCAACCTCGAGCAGGAGGAGCTGGACAAGCGCAAGAAGGACGAAAACACC
TCCAAGTCTCTCTTCAAGGTCACGGGCGAGACAAAGGTGTTTGGCACCGA
CCTCGAGGAGCTCTGCACCCGCGAGGGCCTCAAGGTGCCCAAGTTCCTCA
AGTTCACCTGCTCCTGGATCGAGAAGAACGCAGCTGTGCGACTACTGGGA
CGCCTACACGGACTTCTTCACAAAGGGCTTCAAGTGGGTCAACAACATGC
AGCCGGTCATCGAGCGGTACCGCGAGCACCTCAACCTCGAGCAGGAGGAG
CTGGACAAGCGCAAGAAGGACGAAAACACCTCCAAGTCTCTCTTCAAGGT
CACGGGCGAGACAAAGGTGTTTGGCACCGACCTCGAGGAGCTCTGCACCC
GCGAGGGCCTCAAGGTGCCCAAGTTCCTCAAGTTCACCTGCTCCTGGATC
GAGAAGAACGCGTCGGAGATGGAGGGCATCTTCAGGATCTCGTCCTTCAA
GGACACGATGGAGGACTACAAGCGGATGATCGACGAGGGCTGGCGCCTGG
ACTACTCCGAGGTGGCCGACCCCCACGTGGTCCGTCGGAGATGGAGGGCA
TCTTCAGGATCTCGTCCTTCAAGGACACGATGGAGGACTACAAGCGGATG
ATCGACGAGGGCTGGCGCCTGGACTACTCCGAGGTGGCCGACCCCCACGT
GGTC
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