mRNA_M-pyrifera_M_contig110345.2163.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110345.2163.1
Unique NamemRNA_M-pyrifera_M_contig110345.2163.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110345.2163.1 vs. uniprot
Match: UPI001F04BBDD (ubiquitin-associated domain-containing protein 1-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04BBDD)

HSP 1 Score: 63.5 bits (153), Expect = 1.150e-9
Identity = 32/81 (39.51%), Postives = 50/81 (61.73%), Query Frame = 1
Query:   25 RQFSPSEQAQQQLLDMGFPQEQVVQALRACDNNYEAACAWLLGDRVEVPRSRATGPGSMLEMFSALTQGSLLKAIQHNPEM 267
            R+F P+++A + L DMGFP+E VV+AL+   NN  AAC WLLG+R +V     TG      ++SA+ +  +++    NP +
Sbjct:  247 REFVPNKKAFELLKDMGFPEEDVVKALKVTGNNQRAACDWLLGERHDVVDDSETGLDPESPLYSAIMENPVVQLSLTNPRI 327          
BLAST of mRNA_M-pyrifera_M_contig110345.2163.1 vs. uniprot
Match: A0A2J7R702_9NEOP (Ubiquitin-associated domain-containing protein 1 n=2 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7R702_9NEOP)

HSP 1 Score: 63.2 bits (152), Expect = 1.670e-9
Identity = 39/91 (42.86%), Postives = 50/91 (54.95%), Query Frame = 1
Query:   25 RQFSPSEQAQQQLLDMGFPQEQVVQALRACDNNYEAACAWLLGDRVEVPRSRATGPGSMLEMFSALTQGSLLKAIQHNPEMERCMRSPKPL 297
            R F P+ +A Q L+DMGFP+E V  AL    NN  AAC WLLG+R    R    G    L+      +GS+ KAI  NP ++  + SPK L
Sbjct:  280 RDFQPNVKALQNLMDMGFPEEDVCDALCVTGNNQSAACEWLLGER----RKSLEGLDIGLD-----PEGSIYKAIMSNPVIQLSLTSPKML 361          
BLAST of mRNA_M-pyrifera_M_contig110345.2163.1 vs. uniprot
Match: A0A2P8Y4Q7_BLAGE (Ubiquitin-associated domain-containing protein 1 n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8Y4Q7_BLAGE)

HSP 1 Score: 62.8 bits (151), Expect = 2.300e-9
Identity = 39/95 (41.05%), Postives = 50/95 (52.63%), Query Frame = 1
Query:   13 AATQRQFSPSEQAQQQLLDMGFPQEQVVQALRACDNNYEAACAWLLGDRVEVPRSRATGPGSMLEMFSALTQGSLLKAIQHNPEMERCMRSPKPL 297
            A  +R F P+E+A Q L+DMGF +E V  ALR   NN  AAC WLLG+R        TG            +G + KAI  NP ++  + SPK L
Sbjct:  342 AFKRRDFKPNEKALQTLMDMGFSEEDVRDALRITGNNQAAACEWLLGERRPSLEDLDTGLDP---------EGPIYKAIMSNPAIQLSLTSPKML 427          
BLAST of mRNA_M-pyrifera_M_contig110345.2163.1 vs. uniprot
Match: A0A7S0X6Y0_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0X6Y0_9CHLO)

HSP 1 Score: 62.4 bits (150), Expect = 3.120e-9
Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = 1
Query:   37 PSEQAQQQLLDMGFPQEQVVQALRACDNNYEAACAWLLGDRVEVPRSRATGPGSMLEMFSALTQGSLLKAIQHNPEMERCMRS 285
            P E    QL++MGFP+E V+ AL A  N+Y+AACAWLLG+R  +P  + TG G+   M   L +     AIQ   E ER +++
Sbjct:  295 PDEVIVLQLVEMGFPREDVLAALAASHNDYDAACAWLLGERGGMPEGQGTG-GTPESMHMLLGEILSHPAIQQGLESERVLQA 376          
BLAST of mRNA_M-pyrifera_M_contig110345.2163.1 vs. uniprot
Match: A0A1S3K7M3_LINUN (ubiquitin-associated domain-containing protein 1 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3K7M3_LINUN)

HSP 1 Score: 62.0 bits (149), Expect = 3.760e-9
Identity = 34/93 (36.56%), Postives = 51/93 (54.84%), Query Frame = 1
Query:   13 AATQRQFSPSEQAQQQLLDMGFPQEQVVQALRACDNNYEAACAWLLGDRVEVPRSRATGPGSMLEMFSALTQGSLLKAIQHNPEMERCMRSPK 291
            A  +R+F  + +A + L++MGFP+ +VV ALR C NN +AAC WLLGDR         G            + S+ KAI  NP ++  + +P+
Sbjct:  193 AYKRREFKANPRALRNLMEMGFPETEVVDALRVCQNNQDAACEWLLGDRRPQAEDLEVGLNP---------ESSVYKAIMANPVVQLGLNNPR 276          
BLAST of mRNA_M-pyrifera_M_contig110345.2163.1 vs. uniprot
Match: A0A6L2PY40_COPFO (Uncharacterized protein (Fragment) n=1 Tax=Coptotermes formosanus TaxID=36987 RepID=A0A6L2PY40_COPFO)

HSP 1 Score: 61.2 bits (147), Expect = 6.620e-9
Identity = 37/92 (40.22%), Postives = 47/92 (51.09%), Query Frame = 1
Query:   25 RQFSPSEQAQQQLLDMGFPQEQVVQALRACDNNYEAACAWLLGDRVEVPRSRATGPGSMLEMFSALT-QGSLLKAIQHNPEMERCMRSPKPL 297
            R F P  +A Q L+DMGFP+E +  AL    NN  AAC WLLGDR            S+ +M + L   G +  AI  NP +   + SPK L
Sbjct:  196 RDFKPDTKALQNLMDMGFPEEDICDALHVTGNNQSAACEWLLGDRHP----------SLEDMDTGLDPDGPMYNAIMSNPAIRLSLSSPKML 277          
BLAST of mRNA_M-pyrifera_M_contig110345.2163.1 vs. uniprot
Match: C1MX24_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MX24_MICPC)

HSP 1 Score: 61.2 bits (147), Expect = 7.560e-9
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = 1
Query:   37 PSEQAQQQLLDMGFPQEQVVQALRACDNNYEAACAWLLGDRVEVPRSRATGPGSMLEMFSALTQGSLLK--AIQHNPEMERCMRS 285
            P E   Q++++MGFP+E V+ ALRA  NN++AACAWLLG+R  V R + T      E    L  G +L   AIQ   + ER +++
Sbjct:  239 PEEAVVQRVMEMGFPREDVLVALRATHNNHDAACAWLLGERSGVVREQMTVAQGNPESMQMLL-GDILSHPAIQQGMQSERVLQA 322          
BLAST of mRNA_M-pyrifera_M_contig110345.2163.1 vs. uniprot
Match: A0A067RRF0_ZOONE (Ubiquitin-associated domain-containing protein 1 n=1 Tax=Zootermopsis nevadensis TaxID=136037 RepID=A0A067RRF0_ZOONE)

HSP 1 Score: 59.7 bits (143), Expect = 2.810e-8
Identity = 40/100 (40.00%), Postives = 51/100 (51.00%), Query Frame = 1
Query:    1 LEELAATQRQ-FSPSEQAQQQLLDMGFPQEQVVQALRACDNNYEAACAWLLGDRVEVPRSRATGPGSMLEMFSALTQGSLLKAIQHNPEMERCMRSPKPL 297
            LE   A  RQ F P+ +A Q L+DMGF +E    ALR   NN+ AAC WLLG+R        TG            +G + KAI  NP ++  + SPK L
Sbjct:  309 LESFRAYVRQDFKPNMKALQNLMDMGFSEEDARDALRITGNNHSAACEWLLGERRASLEDTDTGLDP---------EGPIYKAIMSNPAIQLSLTSPKML 399          
BLAST of mRNA_M-pyrifera_M_contig110345.2163.1 vs. uniprot
Match: A0A8C2DKU7_CYPCA (Ubiquitin-associated domain-containing protein 1 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2DKU7_CYPCA)

HSP 1 Score: 59.3 bits (142), Expect = 3.270e-8
Identity = 29/80 (36.25%), Postives = 46/80 (57.50%), Query Frame = 1
Query:   25 RQFSPSEQAQQQLLDMGFPQEQVVQALRACDNNYEAACAWLLGDRVEVPRSRATGPGSMLEMFSALTQGSLLKAIQHNPE 264
            R+F P  QA   L++MGF +++V+ ALR  +N  +AAC WLLGDR   P     G  +   +F A+ +  +++    NP+
Sbjct:  192 REFRPDSQAVIALMEMGFDEKEVIDALRVNNNQQDAACEWLLGDRKPTPEDLDKGIDTSSPLFQAILENPVVQLGLTNPK 271          
BLAST of mRNA_M-pyrifera_M_contig110345.2163.1 vs. uniprot
Match: UPI00106B8D7A (ubiquitin-associated domain-containing protein 1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106B8D7A)

HSP 1 Score: 58.9 bits (141), Expect = 5.010e-8
Identity = 29/81 (35.80%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   25 RQFSPSEQAQQQLLDMGFPQEQVVQALRACDNNYEAACAWLLGDRVEVPRSRATGPGSMLEMFSALTQGSLLKAIQHNPEM 267
            R+F P+++  + L DMGFP+E V++AL+A  NN  AAC WLLG+R +V      G      +++A+ +   ++    NP +
Sbjct:  251 REFVPNKKGVEMLKDMGFPEEDVIKALKATGNNQRAACDWLLGERHDVVDDSDPGLNPESPLYAAIMENPGVQLSLTNPRI 331          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110345.2163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001F04BBDD1.150e-939.51ubiquitin-associated domain-containing protein 1-l... [more]
A0A2J7R702_9NEOP1.670e-942.86Ubiquitin-associated domain-containing protein 1 n... [more]
A0A2P8Y4Q7_BLAGE2.300e-941.05Ubiquitin-associated domain-containing protein 1 n... [more]
A0A7S0X6Y0_9CHLO3.120e-943.37Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A1S3K7M3_LINUN3.760e-936.56ubiquitin-associated domain-containing protein 1 n... [more]
A0A6L2PY40_COPFO6.620e-940.22Uncharacterized protein (Fragment) n=1 Tax=Coptote... [more]
C1MX24_MICPC7.560e-942.35Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]
A0A067RRF0_ZOONE2.810e-840.00Ubiquitin-associated domain-containing protein 1 n... [more]
A0A8C2DKU7_CYPCA3.270e-836.25Ubiquitin-associated domain-containing protein 1 n... [more]
UPI00106B8D7A5.010e-835.80ubiquitin-associated domain-containing protein 1-l... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110345contigM-pyrifera_M_contig110345:223..519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score61.2
Seed ortholog evalue3.1e-07
Seed eggNOG ortholog45351.EDO34783
Preferred nameUBAC1
KEGG koko:K12174
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0005886,GO:0012505,GO:0016020,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0071944
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGs28IDF@1,2QQQ6@2759,38CRH@33154,3BDPF@33208
COG Functional cat.S
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons1
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815614.4833167-CDS-M-pyrifera_M_contig110345:222..5191622815614.4833167-CDS-M-pyrifera_M_contig110345:222..519Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110345 223..519 +
1692277488.1785817-CDS-M-pyrifera_M_contig110345:222..5191692277488.1785817-CDS-M-pyrifera_M_contig110345:222..519Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110345 223..519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110345.2163.1prot_M-pyrifera_M_contig110345.2163.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110345 223..519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110345.2163.1

>prot_M-pyrifera_M_contig110345.2163.1 ID=prot_M-pyrifera_M_contig110345.2163.1|Name=mRNA_M-pyrifera_M_contig110345.2163.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
LEELAATQRQFSPSEQAQQQLLDMGFPQEQVVQALRACDNNYEAACAWLL
GDRVEVPRSRATGPGSMLEMFSALTQGSLLKAIQHNPEMERCMRSPKPL
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mRNA from alignment at M-pyrifera_M_contig110345:223..519+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110345.2163.1 ID=mRNA_M-pyrifera_M_contig110345.2163.1|Name=mRNA_M-pyrifera_M_contig110345.2163.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig110345:223..519+ (Macrocystis pyrifera P11B4 male)
TTGGAGGAGTTGGCGGCGACACAGCGGCAGTTCTCGCCCAGTGAGCAGGC GCAGCAACAGCTGTTGGACATGGGCTTTCCGCAGGAGCAGGTGGTGCAAG CTCTGCGCGCCTGCGACAACAACTACGAAGCCGCATGCGCGTGGCTGCTG GGCGACCGCGTGGAGGTGCCCCGCAGCAGGGCCACTGGGCCCGGCTCCAT GCTGGAGATGTTCAGCGCACTTACGCAGGGCTCCCTCCTCAAGGCCATCC AGCACAACCCCGAGATGGAGCGCTGCATGCGCTCGCCCAAGCCCCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110345:223..519+

>mRNA_M-pyrifera_M_contig110345.2163.1 ID=mRNA_M-pyrifera_M_contig110345.2163.1|Name=mRNA_M-pyrifera_M_contig110345.2163.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig110345:223..519+ (Macrocystis pyrifera P11B4 male)
TTGGAGGAGTTGGCGGCGACACAGCGGCAGTTCTCGCCCAGTGAGCAGGC
GCAGCAACAGCTGTTGGACATGGGCTTTCCGCAGGAGCAGGTGGTGCAAG
CTCTGCGCGCCTGCGACAACAACTACGAAGCCGCATGCGCGTGGCTGCTG
GGCGACCGCGTGGAGGTGCCCCGCAGCAGGGCCACTGGGCCCGGCTCCAT
GCTGGAGATGTTCAGCGCACTTACGCAGGGCTCCCTCCTCAAGGCCATCC
AGCACAACCCCGAGATGGAGCGCTGCATGCGCTCGCCCAAGCCCCTCTTG
GAGGAGTTGGCGGCGACACAGCGGCAGTTCTCGCCCAGTGAGCAGGCGCA
GCAACAGCTGTTGGACATGGGCTTTCCGCAGGAGCAGGTGGTGCAAGCTC
TGCGCGCCTGCGACAACAACTACGAAGCCGCATGCGCGTGGCTGCTGGGC
GACCGCGTGGAGGTGCCCCGCAGCAGGGCCACTGGGCCCGGCTCCATGCT
GGAGATGTTCAGCGCACTTACGCAGGGCTCCCTCCTCAAGGCCATCCAGC
ACAACCCCGAGATGGAGCGCTGCATGCGCTCGCCCAAGCCCCTC
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