mRNA_M-pyrifera_M_contig110260.2152.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110260.2152.1
Unique NamemRNA_M-pyrifera_M_contig110260.2152.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110260.2152.1 vs. uniprot
Match: A0A6I6A8X3_9PLAN (Carbohydrate porin n=9 Tax=Gimesia TaxID=1649453 RepID=A0A6I6A8X3_9PLAN)

HSP 1 Score: 229 bits (584), Expect = 4.400e-72
Identity = 109/115 (94.78%), Postives = 114/115 (99.13%), Query Frame = 1
Query:    1 AGSTDDQPQGLTIFAQHFPTSTYGRSPFPLIPHDALAGLAYTGLIRGRDQDVTGAGAGWVDLDQGGTDSEIMVEVFYKAQINDALSIQPDLQYITTPSGIYPDAFVAGLRFQLDL 345
            AGSTDDQPQGLT+FAQHFPTSTYGRSPFPLIPHDALAGL+YTGLIRGRDQDVTGAGAGWV+LDQGGT+ EIMVEVFYKAQINDALSIQPDLQYI+TPSGIYPDAFVAGLRFQLDL
Sbjct:  303 AGSTDDQPQGLTVFAQHFPTSTYGRSPFPLIPHDALAGLSYTGLIRGRDQDVTGAGAGWVELDQGGTNREIMVEVFYKAQINDALSIQPDLQYISTPSGIYPDAFVAGLRFQLDL 417          
BLAST of mRNA_M-pyrifera_M_contig110260.2152.1 vs. uniprot
Match: A0A518A601_9PLAN (Porin B n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A601_9PLAN)

HSP 1 Score: 214 bits (544), Expect = 3.490e-66
Identity = 99/115 (86.09%), Postives = 108/115 (93.91%), Query Frame = 1
Query:    1 AGSTDDQPQGLTIFAQHFPTSTYGRSPFPLIPHDALAGLAYTGLIRGRDQDVTGAGAGWVDLDQGGTDSEIMVEVFYKAQINDALSIQPDLQYITTPSGIYPDAFVAGLRFQLDL 345
            A STDDQ QGL +FAQHFPT+TYG SP+PLIPHDALAG  YTGL+RGRDQDVTGAGAGWVDLDQGGTD E+MVEVFYKA+IN++LSIQPDLQY+TTPSGIYPDAFVAGLRFQLDL
Sbjct:  293 ADSTDDQRQGLAVFAQHFPTATYGSSPYPLIPHDALAGFVYTGLLRGRDQDVTGAGAGWVDLDQGGTDHEVMVEVFYKARINESLSIQPDLQYVTTPSGIYPDAFVAGLRFQLDL 407          
BLAST of mRNA_M-pyrifera_M_contig110260.2152.1 vs. uniprot
Match: A0A350KB63_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350KB63_9PLAN)

HSP 1 Score: 194 bits (492), Expect = 5.810e-62
Identity = 91/114 (79.82%), Postives = 98/114 (85.96%), Query Frame = 1
Query:    1 AGSTDDQPQGLTIFAQHFPTSTYGRSPFPLIPHDALAGLAYTGLIRGRDQDVTGAGAGWVDLDQGGTDSEIMVEVFYKAQINDALSIQPDLQYITTPSGIYPDAFVAGLRFQLD 342
            AG   D PQGL+ FAQHFPT + G SPFPLIP DALAG+ YTGLIR RD DVTGAGAGWVDLDQGGTD E+M+EVFYKA +ND L IQPDLQYITTPSGIYPDAFVAG+RFQLD
Sbjct:   12 AGCDSDNPQGLSAFAQHFPTYSSGNSPFPLIPRDALAGITYTGLIRNRDADVTGAGAGWVDLDQGGTDQEVMIEVFYKAIVNDNLIIQPDLQYITTPSGIYPDAFVAGIRFQLD 125          
BLAST of mRNA_M-pyrifera_M_contig110260.2152.1 vs. uniprot
Match: A0A517V8F1_9PLAN (Porin B n=8 Tax=Gimesia TaxID=1649453 RepID=A0A517V8F1_9PLAN)

HSP 1 Score: 193 bits (491), Expect = 3.420e-58
Identity = 91/115 (79.13%), Postives = 98/115 (85.22%), Query Frame = 1
Query:    1 AGSTDDQPQGLTIFAQHFPTSTYGRSPFPLIPHDALAGLAYTGLIRGRDQDVTGAGAGWVDLDQGGTDSEIMVEVFYKAQINDALSIQPDLQYITTPSGIYPDAFVAGLRFQLDL 345
            AG   D PQGL+ F QHFPT + G SPFPLIP DALAG+ YTGLIR RD DVTGAGAGWVDLDQGGTD E+M+EVFYKA +ND L IQPDLQYITTPSGIYPDAFVAG+RFQLDL
Sbjct:  297 AGCDTDNPQGLSAFVQHFPTYSSGNSPFPLIPRDALAGITYTGLIRNRDADVTGAGAGWVDLDQGGTDQEVMIEVFYKAIVNDNLIIQPDLQYITTPSGIYPDAFVAGIRFQLDL 411          
BLAST of mRNA_M-pyrifera_M_contig110260.2152.1 vs. uniprot
Match: A0A518IC21_9PLAN (Porin B n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518IC21_9PLAN)

HSP 1 Score: 190 bits (483), Expect = 7.300e-57
Identity = 88/115 (76.52%), Postives = 98/115 (85.22%), Query Frame = 1
Query:    1 AGSTDDQPQGLTIFAQHFPTSTYGRSPFPLIPHDALAGLAYTGLIRGRDQDVTGAGAGWVDLDQGGTDSEIMVEVFYKAQINDALSIQPDLQYITTPSGIYPDAFVAGLRFQLDL 345
            A STDD PQGL++FAQH+PT T G SPFP IP D LAG AYTGL+RGRD+DV GAG GWV+L+QGGTD E+MVEVFYKAQIND LSIQPDLQYI TPSG+YP A  AG+RFQLDL
Sbjct:  310 ADSTDDNPQGLSVFAQHYPTETNGNSPFPEIPQDGLAGFAYTGLLRGRDEDVIGAGIGWVELNQGGTDEELMVEVFYKAQINDNLSIQPDLQYINTPSGLYPSALAAGIRFQLDL 424          
BLAST of mRNA_M-pyrifera_M_contig110260.2152.1 vs. uniprot
Match: A0A2E2C0L5_9PLAN (Uncharacterized protein n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C0L5_9PLAN)

HSP 1 Score: 186 bits (473), Expect = 1.560e-55
Identity = 85/115 (73.91%), Postives = 96/115 (83.48%), Query Frame = 1
Query:    1 AGSTDDQPQGLTIFAQHFPTSTYGRSPFPLIPHDALAGLAYTGLIRGRDQDVTGAGAGWVDLDQGGTDSEIMVEVFYKAQINDALSIQPDLQYITTPSGIYPDAFVAGLRFQLDL 345
            AGS +D PQGL+ F QHFPT +   SPFP IPHDALAG+ YTGL R RD D+TGAGAGWVDLDQGGTD E+M+EVFYKA++ND L IQPDLQY TTPSGIYPDA VAG+RFQ +L
Sbjct:  294 AGSDEDSPQGLSAFVQHFPTYSSDNSPFPQIPHDALAGITYTGLFRNRDADITGAGAGWVDLDQGGTDQEVMIEVFYKAKVNDNLIIQPDLQYFTTPSGIYPDALVAGIRFQWEL 408          
BLAST of mRNA_M-pyrifera_M_contig110260.2152.1 vs. uniprot
Match: A0A517WUU2_9PLAN (Porin B n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WUU2_9PLAN)

HSP 1 Score: 174 bits (441), Expect = 9.700e-51
Identity = 80/115 (69.57%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 AGSTDDQPQGLTIFAQHFPTSTYGRSPFPLIPHDALAGLAYTGLIRGRDQDVTGAGAGWVDLDQGGTDSEIMVEVFYKAQINDALSIQPDLQYITTPSGIYPDAFVAGLRFQLDL 345
            A STDD PQGL++FAQH+PT+T G S FP IP D LAG+ Y GL+RGRD+DV GAG GWV L +GGTD E MVE+FYKA+IN  LS+QPD+QYI TPSGIYP+A V GLR QLDL
Sbjct:  296 ADSTDDNPQGLSLFAQHYPTNTNGSSSFPEIPEDGLAGIVYRGLLRGRDEDVAGAGLGWVKLTEGGTDEEFMVELFYKAKINSTLSVQPDIQYINTPSGIYPNALVVGLRVQLDL 410          
BLAST of mRNA_M-pyrifera_M_contig110260.2152.1 vs. uniprot
Match: A0A5B9MLB3_9BACT (Porin B n=1 Tax=Stieleria maiorica TaxID=2795974 RepID=A0A5B9MLB3_9BACT)

HSP 1 Score: 120 bits (300), Expect = 5.870e-30
Identity = 58/111 (52.25%), Postives = 73/111 (65.77%), Query Frame = 1
Query:   13 DDQPQGLTIFAQHFPTSTYGRSPFPLIPHDALAGLAYTGLIRGRDQDVTGAGAGWVDLDQGGTDSEIMVEVFYKAQINDALSIQPDLQYITTPSGIYPDAFVAGLRFQLDL 345
            ++  QGL IF  +FP    G  P   I    + GL YTGLI GRD+DV GAG  W  L+QGGT+ E  +EVFYKA++   L++QPDLQYI+TPSGIY D+ V G R +L L
Sbjct:  305 EESVQGLGIFGAYFPRFANGAIPISSIDDALVCGLVYTGLISGRDEDVAGAGYAWAGLNQGGTNEESAIEVFYKAKLTPRLTLQPDLQYISTPSGIYSDSRVVGTRLELRL 415          
BLAST of mRNA_M-pyrifera_M_contig110260.2152.1 vs. uniprot
Match: A0A5C5Z430_9BACT (Porin B n=1 Tax=Planctomycetes bacterium CA13 TaxID=2527986 RepID=A0A5C5Z430_9BACT)

HSP 1 Score: 115 bits (288), Expect = 4.530e-28
Identity = 57/108 (52.78%), Postives = 70/108 (64.81%), Query Frame = 1
Query:   25 QGLTIFAQHFPTSTYG---RSPFPLIPHDALAGLAYTGLIRGRDQDVTGAGAGWVDLDQGGTDSEIMVEVFYKAQINDALSIQPDLQYITTPSGIYPDAFVAGLRFQL 339
            QGL IFA + P    G    SP  +I   A AG  Y GL+ GRD+DV GAG  W  L+ GGT+ E +VE FYKAQ+ D +S+QPD+QYI +PSGIY DA   GLRF +
Sbjct:  338 QGLGIFALYLPRFGGGPVTASPLEVIEESAAAGFVYRGLLPGRDEDVIGAGIAWTQLNLGGTNRETVVETFYKAQVTDTVSVQPDIQYIASPSGIYDDALTVGLRFTV 445          
BLAST of mRNA_M-pyrifera_M_contig110260.2152.1 vs. uniprot
Match: A0A5C6D7D9_9BACT (Carbohydrate-selective porin, OprB family n=1 Tax=Novipirellula artificiosorum TaxID=2528016 RepID=A0A5C6D7D9_9BACT)

HSP 1 Score: 98.6 bits (244), Expect = 1.440e-24
Identity = 45/79 (56.96%), Postives = 57/79 (72.15%), Query Frame = 1
Query:  103 ALAGLAYTGLIRGRDQDVTGAGAGWVDLDQGGTDSEIMVEVFYKAQINDALSIQPDLQYITTPSGIYPDAFVAGLRFQL 339
            A AG+ Y GL+ GRD+DV GAG  W  L+ GGT+ E +VE FYKAQ+   +S+QPD+QYI +PSGIY DA   GLRF +
Sbjct:   19 AAAGVVYRGLLPGRDEDVIGAGIAWARLNLGGTNQETVVETFYKAQVTATVSMQPDIQYIASPSGIYRDALAVGLRFTV 97          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110260.2152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I6A8X3_9PLAN4.400e-7294.78Carbohydrate porin n=9 Tax=Gimesia TaxID=1649453 R... [more]
A0A518A601_9PLAN3.490e-6686.09Porin B n=2 Tax=Gimesia panareensis TaxID=2527978 ... [more]
A0A350KB63_9PLAN5.810e-6279.82Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A517V8F1_9PLAN3.420e-5879.13Porin B n=8 Tax=Gimesia TaxID=1649453 RepID=A0A517... [more]
A0A518IC21_9PLAN7.300e-5776.52Porin B n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518... [more]
A0A2E2C0L5_9PLAN1.560e-5573.91Uncharacterized protein n=3 Tax=Planctomycetaceae ... [more]
A0A517WUU2_9PLAN9.700e-5169.57Porin B n=2 Tax=Gimesia aquarii TaxID=2527964 RepI... [more]
A0A5B9MLB3_9BACT5.870e-3052.25Porin B n=1 Tax=Stieleria maiorica TaxID=2795974 R... [more]
A0A5C5Z430_9BACT4.530e-2852.78Porin B n=1 Tax=Planctomycetes bacterium CA13 TaxI... [more]
A0A5C6D7D9_9BACT1.440e-2456.96Carbohydrate-selective porin, OprB family n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110260contigM-pyrifera_M_contig110260:3..350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score194.5
Seed ortholog evalue2.7e-47
Seed eggNOG ortholog344747.PM8797T_31043
KEGG koko:K07267
KEGG TC1.B.19.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.wide pore channel activity
EggNOG OGsCOG3659@1,COG3659@2
COG Functional cat.M
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size348
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815613.9393678-CDS-M-pyrifera_M_contig110260:2..3501622815613.9393678-CDS-M-pyrifera_M_contig110260:2..350Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110260 3..350 +
1692277487.9331279-CDS-M-pyrifera_M_contig110260:2..3501692277487.9331279-CDS-M-pyrifera_M_contig110260:2..350Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110260 3..350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110260.2152.1prot_M-pyrifera_M_contig110260.2152.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110260 3..350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110260.2152.1

>prot_M-pyrifera_M_contig110260.2152.1 ID=prot_M-pyrifera_M_contig110260.2152.1|Name=mRNA_M-pyrifera_M_contig110260.2152.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
AGSTDDQPQGLTIFAQHFPTSTYGRSPFPLIPHDALAGLAYTGLIRGRDQ
DVTGAGAGWVDLDQGGTDSEIMVEVFYKAQINDALSIQPDLQYITTPSGI
YPDAFVAGLRFQLDL*
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mRNA from alignment at M-pyrifera_M_contig110260:3..350+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110260.2152.1 ID=mRNA_M-pyrifera_M_contig110260.2152.1|Name=mRNA_M-pyrifera_M_contig110260.2152.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig110260:3..350+ (Macrocystis pyrifera P11B4 male)
GCAGGCAGCACGGACGACCAGCCTCAGGGCCTGACCATCTTTGCTCAGCA TTTTCCCACCAGCACCTATGGACGTTCTCCTTTCCCTCTGATCCCGCATG ATGCCCTGGCCGGGCTCGCTTATACCGGTCTGATCCGCGGTCGGGACCAG GATGTCACCGGCGCCGGAGCAGGGTGGGTCGACCTCGACCAGGGGGGCAC CGACAGTGAAATCATGGTCGAAGTCTTCTACAAAGCACAGATCAACGACG CACTCAGTATCCAGCCCGATCTGCAGTACATCACCACTCCTTCCGGCATC TATCCCGACGCCTTCGTCGCCGGCCTGCGGTTTCAACTCGATCTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110260:3..350+

>mRNA_M-pyrifera_M_contig110260.2152.1 ID=mRNA_M-pyrifera_M_contig110260.2152.1|Name=mRNA_M-pyrifera_M_contig110260.2152.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig110260:3..350+ (Macrocystis pyrifera P11B4 male)
GCAGGCAGCACGGACGACCAGCCTCAGGGCCTGACCATCTTTGCTCAGCA
TTTTCCCACCAGCACCTATGGACGTTCTCCTTTCCCTCTGATCCCGCATG
ATGCCCTGGCCGGGCTCGCTTATACCGGTCTGATCCGCGGTCGGGACCAG
GATGTCACCGGCGCCGGAGCAGGGTGGGTCGACCTCGACCAGGGGGGCAC
CGACAGTGAAATCATGGTCGAAGTCTTCTACAAAGCACAGATCAACGACG
CACTCAGTATCCAGCCCGATCTGCAGTACATCACCACTCCTTCCGGCATC
TATCCCGACGCCTTCGTCGCCGGCCTGCGGTTTCAACTCGATCTCTGAGC
AGGCAGCACGGACGACCAGCCTCAGGGCCTGACCATCTTTGCTCAGCATT
TTCCCACCAGCACCTATGGACGTTCTCCTTTCCCTCTGATCCCGCATGAT
GCCCTGGCCGGGCTCGCTTATACCGGTCTGATCCGCGGTCGGGACCAGGA
TGTCACCGGCGCCGGAGCAGGGTGGGTCGACCTCGACCAGGGGGGCACCG
ACAGTGAAATCATGGTCGAAGTCTTCTACAAAGCACAGATCAACGACGCA
CTCAGTATCCAGCCCGATCTGCAGTACATCACCACTCCTTCCGGCATCTA
TCCCGACGCCTTCGTCGCCGGCCTGCGGTTTCAACTCGATCTCTGA
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